genome.fa.s1.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  45  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17246698--17246771	32	2.4	31	81	6	87	50	9	14	25	1.73
17247743--17247818	31	2.5	31	91	2	118	21	7	14	56	1.63
17254248--17254288	2	21.0	2	95	5	75	51	0	0	48	1.00
17255145--17255194	3	17.3	3	76	15	52	70	0	2	28	0.99
17255145--17255194	17	3.1	16	83	11	57	70	0	2	28	0.99
17256146--17256175	15	2.1	15	93	6	53	13	6	13	66	1.43
17267171--17267504	38	8.8	38	89	3	487	22	14	20	41	1.89
17267185--17267547	76	4.8	76	88	2	356	22	15	19	42	1.89
17267548--17267577	7	4.4	7	95	4	53	90	10	0	0	0.47
17269083--17269145	3	21.0	3	93	0	108	63	0	3	33	1.10
17269458--17269486	10	3.0	10	95	5	51	89	0	0	10	0.48
17270803--17270842	20	2.0	20	90	0	62	37	12	7	42	1.71
17272707--17272745	20	2.0	20	85	14	55	38	7	5	48	1.54
17276669--17276714	20	2.3	20	96	0	83	45	21	4	28	1.71
17280445--17280731	44	6.6	43	80	6	213	39	16	14	29	1.88
17280504--17280731	44	5.2	44	86	2	264	38	15	15	29	1.89
17280460--17280731	87	3.1	87	79	4	262	39	15	15	29	1.88
17280706--17280755	24	2.1	24	96	0	91	30	14	20	36	1.91
17282976--17283038	23	2.7	23	82	0	81	30	11	33	25	1.90
17283046--17283273	47	4.8	47	87	1	276	26	14	33	25	1.94
17283066--17283193	24	5.4	24	68	5	91	25	14	32	26	1.95
17283059--17283272	95	2.3	94	84	2	268	26	14	33	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17283259--17283302	23	1.9	23	90	0	70	29	15	27	27	1.96
17283353--17283385	8	4.0	8	96	4	57	60	0	15	24	1.35
17283916--17284150	31	7.6	31	89	0	344	30	14	19	35	1.92
17285564--17285872	145	2.1	146	84	1	390	28	17	20	33	1.95
17287973--17288243	31	8.7	31	73	4	172	30	25	15	28	1.96
17287959--17288148	62	3.0	62	85	0	245	32	23	16	27	1.96
17288099--17288250	62	2.4	63	84	5	211	32	29	13	25	1.93
17288099--17288274	62	2.8	62	78	9	189	32	27	13	26	1.94
17289738--17289852	43	2.7	43	82	5	126	20	37	20	22	1.94
17291278--17291329	24	2.2	24	92	0	86	25	25	25	25	2.00
17293696--17293760	21	3.1	21	79	0	76	20	35	23	21	1.96
17296177--17296206	15	2.0	15	93	0	51	76	0	6	16	0.99
17300022--17300168	22	6.6	22	71	12	95	38	20	12	28	1.89
17299982--17300169	44	4.2	44	82	4	207	36	21	13	28	1.91
17300001--17300169	88	1.9	88	85	4	234	38	21	12	27	1.89
17310549--17310610	29	2.2	28	85	2	79	25	9	30	33	1.88
17317787--17317826	20	2.0	20	95	0	71	32	27	5	35	1.79
17322590--17322630	21	1.9	22	85	5	57	14	24	7	53	1.66
17333934--17334049	43	2.7	43	84	5	144	53	9	25	11	1.66
17333962--17334026	14	4.5	15	73	11	55	52	13	24	9	1.70
17334276--17334416	18	7.9	18	65	10	67	25	17	18	38	1.93
17334413--17334569	35	4.5	35	77	10	135	19	16	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17334275--17334451	53	3.3	53	93	2	293	25	16	17	39	1.91
17334440--17334570	70	1.9	70	85	3	183	16	18	19	45	1.85
17334661--17334698	20	2.0	20	89	5	60	31	21	31	15	1.94
17335457--17335502	24	2.0	22	84	12	58	56	8	6	28	1.54
17346047--17346116	29	2.6	27	80	12	81	41	15	17	25	1.89
17346126--17346155	15	2.0	15	93	0	51	30	6	23	40	1.80
17346178--17346244	30	2.2	30	89	5	100	29	16	16	37	1.91
17346208--17346329	54	2.3	54	85	0	163	36	13	14	35	1.85
17346822--17346858	12	3.0	13	84	15	51	18	24	8	48	1.75
17348803--17348838	18	2.0	18	94	0	63	22	27	2	47	1.65
17351074--17351127	25	2.1	26	93	3	92	46	3	14	35	1.63
17352404--17352441	19	2.0	19	89	0	58	28	2	23	44	1.67
17353808--17353832	13	1.9	13	100	0	50	44	0	8	48	1.32
17354723--17354782	30	2.1	29	81	6	68	30	8	23	38	1.84
17357340--17357380	15	2.7	16	88	7	59	26	2	19	51	1.59
17357336--17357381	15	3.1	15	81	9	58	23	2	17	56	1.52
17357416--17357448	5	6.8	5	93	6	59	39	0	21	39	1.53
17357416--17357448	14	2.3	15	94	5	59	39	0	21	39	1.53
17357417--17357456	19	2.1	19	90	0	62	35	2	25	37	1.69
17421767--17421927	50	3.3	50	85	3	222	40	27	7	24	1.81
17421794--17421877	27	3.3	27	62	13	68	44	23	5	26	1.76
17421725--17421964	46	5.0	46	79	11	193	38	26	8	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17421935--17421993	29	2.0	29	100	0	118	42	13	13	30	1.83
17421860--17422090	126	1.9	121	85	4	318	40	23	9	25	1.85
17421964--17422157	46	4.1	46	82	6	235	39	24	10	25	1.87
17421810--17422136	172	1.9	171	91	1	539	40	23	9	26	1.86
17434890--17434928	18	2.2	18	85	0	51	51	2	5	41	1.38
17437210--17437245	10	3.6	10	85	14	56	2	13	0	83	0.76
17445496--17445520	12	2.1	12	100	0	50	48	0	8	44	1.32
17449120--17449156	15	2.5	15	95	0	65	45	5	0	48	1.25
17449179--17449223	15	2.8	17	80	19	60	51	4	0	44	1.21
17484181--17484221	21	2.1	19	86	9	55	60	9	0	29	1.28
17494557--17494615	25	2.4	25	82	0	64	45	6	5	42	1.52
17494758--17494828	2	39.0	2	78	18	84	45	0	0	54	0.99
17494758--17494829	10	6.6	12	86	13	95	44	0	0	55	0.99
17497779--17497821	22	2.0	22	86	9	61	55	0	0	44	0.99
17498376--17498423	23	2.1	23	88	7	71	37	6	22	33	1.80
17499341--17499410	31	2.3	31	87	5	97	38	7	4	50	1.50
17508338--17508378	11	3.7	11	79	20	50	65	2	0	31	1.05
17527461--17527485	13	1.9	13	100	0	50	32	28	24	16	1.96
17527973--17528158	67	2.8	67	86	3	232	25	13	26	33	1.94
17527973--17528134	35	4.9	32	75	12	130	25	14	25	33	1.94
17535750--17535801	27	2.0	26	88	3	77	21	5	15	57	1.58
17535700--17535792	40	2.4	39	79	1	114	21	6	15	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17539715--17539765	27	1.9	26	84	4	66	21	5	9	62	1.47
17549477--17549695	71	3.1	71	79	7	250	43	15	6	35	1.72
17549475--17549695	35	6.3	35	81	4	232	43	14	6	34	1.71
17550466--17550661	73	2.7	73	86	4	261	37	17	21	22	1.94
17563271--17563386	42	2.8	42	85	0	142	21	20	34	23	1.97
17563705--17563866	60	2.7	60	80	5	193	24	19	19	35	1.95
17573671--17573777	41	2.6	41	83	2	135	23	14	35	26	1.94
17580880--17580984	41	2.6	41	85	0	138	28	11	33	26	1.91
17599586--17599612	14	1.9	14	100	0	54	29	0	11	59	1.32
17610580--17610622	20	2.2	20	82	0	50	16	18	18	46	1.84
17610573--17610767	72	2.7	73	87	5	272	22	19	22	35	1.96
17612149--17612192	23	1.9	23	86	9	63	25	15	6	52	1.68
17612888--17612937	18	2.7	19	77	22	54	0	22	4	74	0.99
17613751--17613807	6	9.2	6	78	14	53	5	14	1	78	0.99
17613745--17613790	20	2.2	21	85	11	60	2	15	2	80	0.91
17617025--17617067	21	2.0	21	86	0	59	27	6	25	39	1.81
17621889--17621934	23	2.0	24	86	4	67	65	2	4	28	1.23
17624874--17624908	15	2.3	15	90	0	52	37	5	28	28	1.80
17625513--17625572	30	2.0	30	90	0	93	46	11	6	35	1.67
17626111--17626146	17	2.1	17	89	0	54	30	19	13	36	1.91
17627526--17627573	6	7.7	6	77	9	51	77	0	0	22	0.78
17627529--17627580	25	2.1	25	89	7	79	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17627793--17627849	15	3.8	15	85	0	69	31	26	7	35	1.83
17630006--17630087	41	2.0	41	100	0	164	36	26	9	26	1.88
17630262--17630560	150	1.9	154	85	5	408	40	31	16	12	1.85
17631064--17631138	11	6.5	11	72	11	51	66	6	1	25	1.24
17631060--17631102	22	2.0	22	85	0	59	60	2	2	34	1.22
17631485--17631531	23	2.1	22	84	4	58	36	4	4	55	1.39
17632333--17632380	19	2.6	19	86	3	71	56	0	4	39	1.19
17634435--17634480	19	2.4	19	96	3	83	26	2	30	41	1.68
17634972--17635009	19	2.0	19	94	0	67	28	0	28	42	1.56
17640216--17640261	22	2.0	23	87	4	67	32	8	19	39	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93