genome.fa.s1.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  67  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25534899--25535258	60	6.0	59	90	1	522	24	18	33	23	1.97
25538308--25538374	33	2.1	32	84	13	86	28	10	0	61	1.29
25538721--25538766	22	2.3	19	85	11	56	43	0	0	56	0.99
25538810--25538905	33	2.8	34	77	7	95	57	1	7	34	1.33
25538980--25539035	27	2.1	28	83	12	73	41	7	0	51	1.29
25540393--25540448	19	2.9	19	81	5	69	73	1	0	25	0.93
25540393--25540433	18	2.2	19	91	4	66	75	2	0	21	0.92
25540393--25540442	18	2.8	18	80	14	59	74	2	0	24	0.93
25542090--25542268	90	2.0	89	86	0	241	34	22	14	27	1.93
25558857--25558898	2	21.0	2	95	0	75	52	0	0	47	1.00
25565116--25565149	14	2.5	14	90	4	52	11	14	0	73	1.10
25580533--25580571	19	2.1	18	85	4	51	12	12	7	66	1.43
25588036--25588124	40	2.2	40	85	0	124	35	25	14	23	1.93
25587925--25588343	208	2.0	207	83	5	524	37	21	13	28	1.91
25597411--25597492	36	2.3	37	80	4	96	30	18	20	30	1.96
25600838--25600944	35	3.1	34	74	8	110	26	13	24	36	1.92
25600834--25600969	67	2.0	67	88	0	200	25	13	24	36	1.93
25600834--25600934	32	3.1	32	75	8	103	24	13	22	38	1.91
25600838--25600976	35	4.1	35	74	5	104	28	13	25	33	1.94
25603577--25603698	43	2.8	43	80	4	138	25	15	36	22	1.93
25604208--25604261	21	2.6	21	100	0	108	29	24	29	16	1.97
25621071--25621108	19	2.0	20	89	5	60	13	31	10	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25621912--25622022	43	2.6	43	82	0	132	25	18	35	21	1.95
25626791--25626832	2	21.0	2	100	0	84	50	0	0	50	1.00
25627219--25627262	23	2.0	22	81	4	52	43	0	4	52	1.22
25627172--25627304	46	3.0	44	78	7	144	48	5	3	43	1.41
25627375--25627437	10	6.4	10	70	15	51	50	0	1	47	1.10
25629954--25629997	2	22.0	2	80	0	52	47	2	4	45	1.35
25646401--25646670	35	7.7	35	80	3	240	43	12	6	36	1.70
25646415--25646663	107	2.4	105	80	3	288	43	13	7	35	1.71
25646401--25646670	142	1.9	138	86	4	380	43	12	6	36	1.70
25654471--25654596	64	2.0	61	95	4	225	30	27	9	31	1.88
25662519--25662637	37	3.2	37	86	4	186	26	9	36	27	1.87
25667455--25667573	43	2.8	43	89	2	177	21	21	37	19	1.94
25667465--25667586	43	2.8	43	88	2	174	22	18	39	18	1.92
25673639--25673709	26	2.7	24	74	25	63	61	1	21	15	1.41
25677088--25677390	105	2.9	103	89	4	448	36	7	14	40	1.75
25678438--25678508	15	4.7	15	84	5	81	66	0	33	0	0.92
25680048--25680211	81	2.0	81	92	2	276	25	37	14	23	1.92
25683789--25683836	20	2.4	21	75	10	55	16	31	2	50	1.57
25684564--25684612	2	24.0	2	83	4	62	44	4	4	46	1.41
25690639--25690697	27	2.1	27	81	3	64	37	22	11	28	1.89
25699439--25699481	15	2.7	16	85	10	61	44	6	2	46	1.43
25705678--25705736	19	3.4	18	73	21	63	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25705697--25705736	19	2.2	19	90	4	64	50	0	0	50	1.00
25709880--25709972	43	2.2	43	94	0	159	22	15	37	24	1.93
25712543--25712584	19	2.2	19	86	4	57	42	7	19	30	1.78
25716015--25716085	15	4.7	15	76	11	56	64	0	30	4	1.12
25717279--25717328	25	2.0	25	84	0	64	34	18	20	28	1.95
25719306--25719534	29	7.9	28	80	9	199	37	11	7	42	1.70
25719306--25719534	58	3.9	57	80	6	244	37	11	7	42	1.70
25723538--25723618	35	2.3	35	78	0	99	30	12	23	33	1.92
25725492--25725524	2	16.5	2	100	0	66	48	0	0	51	1.00
25730276--25730335	30	2.1	29	81	6	68	31	8	21	38	1.83
25732911--25733012	39	2.6	39	84	4	125	27	38	14	19	1.91
25733872--25733980	35	3.1	34	86	3	146	34	24	2	37	1.70
25737342--25737368	14	1.9	14	100	0	54	51	7	0	40	1.30
25748488--25748528	21	2.1	19	86	9	55	29	0	9	60	1.28
25759328--25759418	43	2.1	43	87	2	130	26	32	15	25	1.95
25760219--25760268	22	2.3	23	79	10	59	50	8	30	12	1.68
25761293--25761368	21	3.7	21	71	16	68	39	15	11	32	1.84
25785595--25785619	13	1.9	13	100	0	50	48	8	0	44	1.32
25787790--25787971	72	2.5	72	82	3	197	20	21	17	40	1.91
25789893--25790008	50	2.3	50	89	2	171	34	19	11	34	1.88
25795669--25795776	42	2.6	42	85	2	137	28	20	25	25	1.99
25803251--25803385	42	3.2	42	84	1	171	23	18	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25825904--25825943	5	8.0	5	91	0	62	37	22	0	40	1.54
25829037--25829074	2	19.0	2	100	0	76	50	0	0	50	1.00
25829314--25829419	36	3.0	35	86	5	126	19	5	29	45	1.73
25829440--25829519	34	2.4	34	79	12	85	33	7	23	35	1.83
25840646--25840677	11	2.9	11	90	0	55	87	0	12	0	0.54
25840633--25840681	6	8.2	6	82	17	66	81	0	16	2	0.78
25840629--25840681	17	3.1	16	89	8	70	81	0	16	1	0.79
25841837--25841874	19	2.0	19	100	0	76	26	0	31	42	1.56
25850412--25850454	22	2.0	22	100	0	86	18	16	13	51	1.77
25857642--25857764	64	2.0	61	87	4	174	40	14	15	29	1.87
25889531--25889649	43	2.8	43	90	2	177	23	35	17	23	1.95
25889583--25889649	21	3.1	21	62	26	50	23	32	19	23	1.97
25901790--25901830	11	3.5	12	83	12	50	58	0	31	9	1.31
25916682--25916743	26	2.4	26	97	0	115	32	41	3	22	1.70
25921102--25921139	20	1.9	20	89	10	60	42	15	2	39	1.61
25921957--25922079	26	4.8	26	78	6	115	30	12	13	43	1.81
25925405--25925439	17	2.1	17	94	0	61	8	37	22	31	1.85
25937084--25937145	2	31.0	2	96	0	115	51	0	0	48	1.00
25937172--25937274	43	2.4	43	80	6	111	25	16	35	22	1.94
25943642--25943886	63	3.9	63	93	0	400	30	13	32	23	1.93
25947457--25947621	61	2.7	61	89	0	240	25	15	29	29	1.96
25950508--25950700	73	2.6	73	78	10	189	43	19	18	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25951158--25951202	23	2.0	21	87	8	63	37	6	24	31	1.81
25954449--25954488	20	2.0	21	85	14	57	52	0	2	45	1.14
25955795--25955834	18	2.2	18	86	0	53	52	17	2	27	1.57
25957026--25957054	9	3.3	9	90	9	51	89	0	0	10	0.48
25957367--25957404	16	2.4	16	82	13	51	60	7	7	23	1.51
25964913--25964990	31	2.5	31	95	0	138	56	10	10	23	1.63
25965781--25965984	108	1.9	108	90	0	327	43	4	15	36	1.69
25966996--25967045	26	1.9	26	87	0	73	30	10	16	44	1.80
25967478--25967515	18	2.1	18	85	9	51	63	0	2	34	1.09
25968227--25968271	20	2.2	21	84	11	58	57	6	20	15	1.60
25968225--25968272	21	2.3	20	76	16	53	58	6	20	14	1.58
25993185--25993220	18	1.9	18	88	5	54	47	27	13	11	1.77
25995025--25995175	67	2.3	67	85	2	196	27	13	25	33	1.93
26018849--26018896	23	2.1	23	92	0	78	39	14	10	35	1.80
26020535--26020790	127	2.0	127	90	1	397	35	7	14	43	1.72
26021299--26021355	25	2.3	24	85	11	71	54	1	7	36	1.38
26024456--26024511	24	2.3	23	79	11	60	67	7	8	16	1.39
26025766--26025812	25	1.9	24	83	12	60	48	2	2	46	1.25
26033620--26033820	71	2.8	71	80	5	201	36	16	19	27	1.93
26039369--26039421	25	2.2	24	83	10	63	37	1	0	60	1.08
26039507--26039557	22	2.3	21	80	12	50	52	1	0	45	1.12
26043815--26043954	71	2.0	70	81	5	165	35	15	20	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26057004--26057301	143	2.1	145	93	1	528	31	18	12	36	1.89
26060270--26060320	21	2.4	21	80	3	57	17	25	21	35	1.95
26060598--26060808	43	5.0	43	81	7	240	26	34	14	25	1.94
26061968--26062006	2	19.5	2	89	0	60	46	2	0	51	1.14
26065912--26065960	23	2.1	23	84	0	62	30	34	4	30	1.76
26065969--26066078	43	2.6	42	82	2	130	22	33	18	25	1.96
26080380--26080422	21	2.0	21	81	0	50	32	9	32	25	1.88
26087700--26087951	97	2.6	98	82	5	303	28	25	17	28	1.98
26096335--26096428	37	2.5	37	91	0	143	29	9	36	24	1.87
26109641--26109670	14	2.1	14	100	0	60	30	13	36	20	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93