genome.fa.s1.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  36  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14060238--14060271	14	2.5	13	85	4	50	64	2	0	32	1.08
14061013--14061050	19	2.0	20	89	5	60	18	2	0	78	0.86
14061013--14061050	20	2.0	20	89	5	60	18	2	0	78	0.86
14069478--14069509	9	3.6	9	100	0	64	9	12	56	21	1.64
14070426--14070501	30	2.5	30	87	8	100	40	1	3	53	1.27
14089148--14089459	162	1.9	163	94	0	545	45	16	9	28	1.78
14097667--14097717	26	2.0	26	100	0	102	43	29	15	11	1.82
14100530--14100592	31	2.0	31	100	0	126	39	3	15	41	1.64
14101887--14101977	39	2.3	39	76	0	101	34	5	14	46	1.68
14102968--14103028	25	2.4	25	76	15	63	49	8	1	40	1.42
14103174--14103222	14	3.5	14	81	8	64	44	12	4	38	1.61
14105505--14105644	68	2.0	69	98	1	273	53	2	10	33	1.49
14107796--14107827	16	2.1	16	94	5	57	34	0	0	65	0.93
14112123--14112211	45	2.0	45	95	0	160	35	5	24	33	1.79
14118656--14118780	27	4.5	28	84	6	148	30	12	22	35	1.90
14118677--14118781	55	1.9	54	88	1	156	29	12	23	34	1.92
14121912--14121980	29	2.3	29	85	5	93	23	11	20	44	1.83
14121923--14121979	29	2.0	29	92	0	96	19	12	21	47	1.81
14132682--14132712	2	15.5	2	93	0	53	0	51	0	48	1.00
14133817--14133854	2	19.0	2	100	0	76	50	0	0	50	1.00
14135012--14135051	21	2.0	20	85	5	53	30	0	7	62	1.23
14138203--14138317	59	1.9	59	84	6	153	38	12	15	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14139523--14139592	29	2.4	29	79	9	79	54	8	18	18	1.68
14140113--14140187	30	2.5	30	80	4	80	25	12	17	45	1.82
14140875--14140904	16	1.9	16	93	6	53	13	0	10	76	1.01
14140860--14140943	38	2.2	40	91	4	136	15	2	10	71	1.24
14140862--14140954	38	2.4	38	85	8	109	16	3	11	68	1.32
14142223--14142476	102	2.5	102	78	5	253	42	11	21	24	1.85
14142290--14142500	102	2.1	102	81	2	237	42	10	21	25	1.85
14142994--14143203	109	1.9	109	91	1	341	28	18	20	32	1.96
14144573--14144660	29	3.0	29	80	3	97	46	5	28	19	1.72
14144929--14145029	35	2.9	34	89	5	148	20	14	21	42	1.88
14145554--14145761	76	2.7	77	80	1	247	50	12	7	30	1.67
14154317--14154350	12	2.9	12	91	4	52	82	0	0	17	0.67
14154532--14154597	24	3.0	21	72	20	53	51	0	0	48	1.00
14154551--14154618	15	4.3	15	68	26	50	47	1	1	50	1.19
14154556--14154618	22	2.6	22	80	12	63	44	1	1	52	1.20
14158433--14158465	17	1.9	17	88	11	50	51	0	0	48	1.00
14168207--14168238	3	10.7	3	93	0	55	65	3	31	0	1.08
14180229--14180269	10	4.1	10	90	0	55	48	4	2	43	1.37
14180229--14180269	4	10.2	4	86	0	55	48	4	2	43	1.37
14180229--14180269	6	6.8	6	85	0	55	48	4	2	43	1.37
14198282--14198366	42	2.0	42	90	0	134	25	0	41	32	1.56
14198657--14198716	31	1.9	31	89	0	93	55	13	5	26	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14199091--14199133	15	2.9	15	80	13	52	34	0	25	39	1.56
14199335--14199375	21	1.9	22	90	5	66	68	4	0	26	1.10
14199909--14199962	28	1.9	28	81	7	65	62	5	29	1	1.28
14200757--14200819	31	2.0	31	87	6	92	25	7	15	50	1.71
14202007--14202045	14	2.8	14	100	0	78	15	23	0	61	1.33
14217403--14217635	54	4.3	54	91	0	349	18	15	39	26	1.90
14221271--14221317	2	24.0	2	95	4	87	51	0	0	48	1.00
14224204--14224260	24	2.4	24	96	0	105	12	19	40	28	1.87
14224150--14224314	78	2.1	78	95	0	294	16	15	40	27	1.89
14224232--14224339	54	2.0	54	96	0	198	19	15	39	25	1.91
14226930--14226996	21	3.4	21	69	26	65	31	4	53	10	1.55
14226933--14226996	19	3.4	19	68	20	53	31	4	54	9	1.53
14226927--14227028	33	2.9	35	84	13	138	31	4	52	10	1.57
14232144--14232237	42	2.2	42	80	0	116	45	11	20	22	1.83
14237312--14237391	41	2.0	41	100	0	160	40	15	18	26	1.90
14238250--14238289	20	2.0	20	90	0	62	42	12	12	32	1.80
14239733--14239759	14	1.9	14	100	0	54	22	7	29	40	1.81
14242466--14242732	68	3.9	68	79	3	286	36	9	18	35	1.83
14247014--14247056	20	2.2	19	84	12	52	44	9	4	41	1.57
14252815--14253040	60	3.8	60	83	1	274	23	30	19	25	1.98
14254412--14254451	12	3.0	14	73	26	50	2	35	0	62	1.09
14254316--14254487	95	1.8	95	85	2	247	4	31	6	58	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14255090--14255127	19	2.0	20	94	5	69	50	0	0	50	1.00
14262762--14262802	21	2.0	21	95	0	73	9	2	26	60	1.40
14263793--14264210	227	1.8	227	85	0	593	30	17	16	35	1.93
14267293--14267359	6	11.8	6	83	12	88	0	32	14	52	1.43
14267285--14267345	16	3.9	16	89	4	90	0	32	16	50	1.45
14267293--14267349	22	2.6	22	100	0	114	0	31	17	50	1.46
14267284--14267357	22	3.4	22	90	0	103	0	33	14	51	1.43
14273470--14273515	15	3.1	15	87	0	65	23	4	36	34	1.75
14274029--14274069	19	2.0	20	90	9	66	26	12	7	53	1.64
14274244--14274368	38	3.1	41	70	13	105	32	16	11	39	1.84
14275137--14275184	25	1.9	25	83	8	62	56	2	2	39	1.23
14277426--14277454	11	2.7	11	94	5	51	93	0	0	6	0.36
14277574--14277607	17	2.1	17	88	5	52	82	2	2	11	0.89
14282492--14282526	15	2.3	15	90	0	52	48	0	2	48	1.16
14285194--14285221	2	14.0	2	100	0	56	50	0	0	50	1.00
14288368--14288409	2	21.0	2	100	0	84	50	0	0	50	1.00
14293842--14293898	25	2.3	24	85	11	80	0	19	0	80	0.71
14293840--14293898	17	3.7	15	81	18	66	0	18	0	81	0.69
14293840--14293901	32	1.9	32	83	6	81	0	19	0	80	0.71
14293846--14293898	8	6.2	8	80	10	61	0	18	0	81	0.70
14294184--14294216	16	2.0	17	88	5	50	39	9	0	51	1.34
14302345--14302683	137	2.4	138	93	2	572	37	20	20	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14309183--14309265	43	2.0	41	83	4	103	37	15	13	33	1.86
14309249--14309333	44	2.0	42	81	9	100	38	23	15	22	1.92
14309334--14309373	18	2.3	18	91	4	64	40	17	10	32	1.83
14309341--14309380	9	4.4	9	87	0	53	40	17	10	32	1.83
14321964--14322024	28	2.2	28	85	5	79	54	13	8	24	1.66
14343143--14343977	85	9.6	86	87	3	1054	45	7	7	39	1.61
14343149--14343977	171	4.8	171	85	4	1013	45	7	7	39	1.61
14343729--14343964	49	5.0	47	73	16	213	42	8	8	40	1.65
14343148--14343964	44	18.7	46	65	21	298	45	7	7	39	1.60
14343143--14343977	86	9.6	93	79	12	649	45	7	7	39	1.61
14344348--14344424	34	2.3	34	86	4	111	23	24	15	36	1.94
14344450--14344485	2	18.0	2	100	0	72	50	0	0	50	1.00
14344825--14345336	105	5.0	102	84	5	622	24	10	23	41	1.86
14344818--14345341	208	2.5	207	84	4	668	24	10	23	41	1.85
14347643--14347752	35	3.1	35	87	5	159	38	7	19	35	1.79
14348675--14348868	78	2.4	80	86	7	250	34	20	12	32	1.90
14348688--14348868	42	4.5	42	76	10	196	34	19	12	33	1.89
14349196--14349372	50	3.5	52	87	3	254	49	23	7	19	1.74
14354222--14354353	34	3.9	33	70	19	83	31	21	18	28	1.97
14358020--14358052	17	2.0	17	88	5	50	33	0	6	60	1.21
14358025--14358061	17	2.4	16	86	13	51	29	0	5	64	1.15
14364480--14364520	2	20.0	2	87	5	55	51	4	0	43	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14364481--14364520	21	1.9	21	89	0	62	52	5	0	42	1.23
14364483--14364519	19	1.9	19	88	0	56	51	5	0	43	1.24
14364549--14364661	42	2.7	41	80	5	127	26	31	19	22	1.97
14364567--14364669	42	2.5	42	86	0	143	25	31	23	20	1.98
14370652--14370676	13	1.9	13	100	0	50	48	8	0	44	1.32
14375520--14375556	5	7.6	5	87	6	58	40	18	2	37	1.65
14375519--14375556	19	2.0	19	94	0	67	39	21	2	36	1.67
14375527--14375553	14	1.9	14	100	0	54	40	22	0	37	1.54
14375594--14375639	15	3.1	15	81	12	58	56	17	2	23	1.52
14378256--14378293	19	2.0	19	94	0	67	42	28	0	28	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93