genome.fa.s1.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  37  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14399101--14399148	15	3.2	15	76	5	53	77	4	6	12	1.11
14401623--14401687	18	3.2	20	79	16	80	52	10	13	23	1.72
14404401--14404483	6	13.7	6	68	22	50	63	1	2	32	1.15
14404400--14404462	14	4.1	15	71	20	58	63	0	1	34	1.04
14404400--14404430	15	2.1	14	94	5	53	67	0	0	32	0.91
14404417--14404478	31	2.0	32	87	9	92	62	1	3	32	1.20
14404500--14404621	39	3.2	39	72	16	114	63	0	5	30	1.23
14414420--14414459	2	20.0	2	100	0	80	50	0	0	50	1.00
14427877--14427912	14	2.6	14	90	0	54	8	16	5	69	1.33
14428000--14428101	26	4.0	26	71	2	98	26	21	12	39	1.89
14428200--14428227	14	2.0	14	100	0	56	42	7	21	28	1.79
14430697--14430721	13	1.9	13	100	0	50	68	16	0	16	1.22
14431921--14432100	98	1.8	99	91	1	299	50	7	7	33	1.60
14432735--14432769	17	1.9	17	88	11	52	65	0	2	31	1.07
14433695--14433760	24	2.9	22	70	12	62	48	1	4	45	1.32
14433904--14433941	15	2.3	16	86	13	51	31	0	13	55	1.38
14437380--14437409	15	2.0	15	93	0	51	30	6	10	53	1.60
14445940--14446092	52	3.1	51	66	24	126	49	6	7	37	1.57
14447650--14447925	141	2.0	140	80	6	315	31	5	18	44	1.72
14448420--14448452	15	2.2	15	94	0	57	18	3	48	30	1.63
14453853--14453945	42	2.2	42	86	3	125	49	2	2	46	1.26
14455718--14455761	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14456742--14456790	23	2.1	24	85	11	66	20	22	2	55	1.54
14457462--14457525	18	3.6	18	79	8	58	21	20	15	42	1.89
14457546--14457623	26	3.0	25	74	10	86	30	17	14	37	1.90
14459034--14459150	59	2.0	59	93	0	198	30	11	9	47	1.72
14464897--14464945	24	2.0	24	92	0	80	32	16	30	20	1.94
14466590--14466645	26	2.2	26	80	6	60	32	10	7	50	1.64
14466603--14466671	26	2.6	26	88	6	95	27	11	5	55	1.58
14466972--14467104	23	5.8	23	82	3	97	35	15	19	30	1.92
14466959--14467105	46	3.2	46	74	3	134	34	15	21	28	1.94
14466960--14467090	69	1.9	69	80	3	156	33	16	20	29	1.95
14467227--14467683	23	20.1	23	69	6	207	31	10	23	34	1.88
14467130--14467543	115	3.6	114	73	5	368	34	9	21	34	1.86
14467181--14467416	69	3.4	69	82	3	269	34	10	21	34	1.87
14467393--14467612	69	3.2	69	85	3	275	33	9	21	35	1.85
14467598--14467630	17	1.9	17	93	0	57	30	9	27	33	1.88
14467663--14467706	23	1.9	23	85	0	61	18	11	31	38	1.86
14471939--14472006	15	4.3	15	68	26	50	47	1	1	50	1.19
14471944--14472006	22	2.5	26	82	12	80	44	1	1	52	1.20
14472866--14472921	22	2.5	22	82	5	60	46	17	16	19	1.84
14473952--14474000	22	2.2	22	96	0	89	42	26	14	16	1.86
14474392--14474892	251	2.0	250	98	0	966	41	7	13	37	1.72
14477571--14477761	63	3.0	63	100	0	382	32	6	20	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14498472--14498523	22	2.4	22	77	6	52	17	13	13	55	1.69
14512603--14512636	12	2.7	13	86	9	52	41	2	17	38	1.65
14517013--14517425	207	2.0	207	93	0	709	27	23	22	26	2.00
14518754--14518826	31	2.4	31	100	0	146	41	15	13	30	1.85
14520469--14520542	36	2.1	36	84	0	94	25	29	17	27	1.97
14525303--14525334	16	2.0	16	100	0	64	50	6	12	31	1.65
14525356--14525437	33	2.4	35	79	6	96	59	1	1	37	1.13
14525455--14525583	41	3.1	41	62	18	104	41	6	3	47	1.49
14525453--14525586	42	3.2	42	63	21	109	41	6	3	47	1.48
14525426--14525590	83	2.0	83	97	2	307	44	6	4	43	1.50
14530428--14530454	12	2.2	12	100	0	54	37	0	0	62	0.95
14531328--14531451	27	4.5	27	71	23	105	34	6	19	39	1.77
14533596--14533835	49	4.9	49	84	2	304	33	25	12	28	1.92
14535964--14536017	27	2.0	27	92	0	90	33	11	14	40	1.82
14536550--14537126	206	3.0	184	83	12	676	35	13	9	41	1.78
14536711--14537103	206	1.9	204	96	1	716	36	14	9	39	1.79
14539204--14539233	15	2.0	15	93	0	51	40	10	0	50	1.36
14542103--14542127	13	1.9	13	100	0	50	48	0	0	52	1.00
14543281--14543344	28	2.2	29	86	2	85	45	20	6	28	1.75
14558967--14559045	32	2.5	32	91	0	131	45	22	5	26	1.73
14572149--14572188	20	2.0	20	86	13	57	70	0	0	27	0.87
14572800--14572831	15	2.1	16	94	5	57	37	18	15	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14577425--14577463	20	2.0	20	89	0	60	15	33	10	41	1.81
14577532--14577738	104	2.0	103	99	0	396	20	29	6	42	1.77
14578571--14578596	2	13.0	2	100	0	52	50	0	0	50	1.00
14584695--14584725	2	15.5	2	93	0	53	54	0	45	0	0.99
14585271--14585307	2	18.0	2	94	5	65	48	0	2	48	1.15
14585561--14585598	2	19.0	2	100	0	76	50	0	0	50	1.00
14585636--14585675	2	21.5	2	80	14	50	47	0	0	52	1.00
14585636--14585675	15	3.0	13	86	13	55	47	0	0	52	1.00
14590318--14590356	13	2.9	13	81	7	51	46	2	0	51	1.14
14590334--14590371	20	1.9	20	88	0	58	50	0	0	50	1.00
14590460--14590499	20	2.0	20	85	9	55	62	0	5	32	1.17
14590566--14590607	13	2.9	15	75	13	52	52	0	0	47	1.00
14590561--14590603	13	3.1	13	83	10	50	55	0	0	44	0.99
14601028--14601073	20	2.3	20	96	0	83	45	21	4	28	1.71
14603221--14603440	120	1.9	111	88	10	325	28	6	1	63	1.28
14603221--14603454	112	2.1	110	80	10	255	28	6	1	63	1.27
14605804--14605878	31	2.5	30	91	4	116	58	5	14	21	1.56
14617002--14617115	35	3.3	35	81	2	95	50	18	11	19	1.76
14617357--14617431	30	2.6	29	89	4	107	20	28	8	44	1.79
14618041--14618103	32	2.0	32	93	0	108	25	11	22	41	1.86
14632535--14632559	3	8.3	3	100	0	50	68	0	0	32	0.90
14638264--14638316	27	2.0	27	100	0	106	16	15	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14638265--14638319	16	3.8	16	70	22	57	16	12	0	70	1.16
14638264--14638327	27	2.4	27	91	0	92	17	12	0	70	1.17
14656344--14656595	124	2.0	124	95	0	450	26	8	35	29	1.86
14656550--14656661	38	2.9	38	90	0	170	28	10	32	28	1.90
14656828--14656864	2	18.5	2	100	0	74	48	0	0	51	1.00
14659677--14659787	56	2.0	55	96	3	197	29	16	5	47	1.68
14659764--14659798	2	17.5	2	93	0	61	51	0	0	48	1.00
14665917--14666057	26	5.5	24	70	21	74	68	0	2	29	1.04
14665981--14666076	13	6.6	15	69	19	62	67	1	1	30	1.04
14666008--14666055	6	7.7	6	77	9	51	77	0	0	22	0.78
14665915--14666056	54	2.7	54	75	14	125	67	0	3	28	1.07
14665993--14666059	25	2.7	26	81	4	75	71	0	0	28	0.86
14665981--14666060	32	2.4	34	85	4	101	70	0	0	30	0.88
14678020--14678101	23	3.5	23	72	9	85	29	23	31	15	1.95
14677824--14678127	141	2.2	141	83	2	378	27	17	32	22	1.96
14677996--14678125	24	5.5	23	68	17	88	28	21	30	19	1.97
14677824--14678128	47	6.5	47	83	5	330	27	17	32	21	1.96
14678116--14678235	53	2.3	53	85	2	161	23	18	30	28	1.98
14678750--14678973	31	7.2	31	88	0	277	24	17	20	37	1.94
14680636--14680958	156	2.1	156	86	0	448	33	19	19	28	1.96
14681313--14681642	31	10.6	31	81	1	311	23	16	21	38	1.93
14683182--14683256	16	4.9	15	73	17	57	34	9	2	53	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14683169--14683256	17	5.6	17	73	11	64	34	11	3	51	1.55
14683169--14683278	31	3.6	31	78	8	91	35	10	4	49	1.59
14683179--14683358	52	3.6	50	78	9	165	36	10	3	48	1.56
14683434--14683507	31	2.3	32	81	2	87	27	32	12	28	1.92
14683559--14683658	31	3.2	31	86	0	137	23	28	18	31	1.97
14684032--14684295	31	8.5	31	83	4	275	25	18	20	36	1.94
14688755--14688836	31	2.6	31	84	3	103	32	21	17	28	1.96
14688819--14688900	23	3.6	23	89	0	110	23	31	20	24	1.98
14688929--14689161	55	4.2	55	84	4	299	41	30	15	12	1.84
14689793--14689835	21	2.0	22	86	4	61	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93