genome.fa.s1.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  49  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18842214--18842252	20	2.0	20	89	0	60	66	0	0	33	0.92
18843036--18843070	15	2.3	15	95	0	61	48	0	5	45	1.26
18851109--18851241	60	2.2	59	84	6	169	33	9	18	39	1.82
18851354--18851453	21	4.7	21	76	7	85	22	14	27	37	1.92
18851458--18851548	26	3.7	26	78	11	109	25	4	26	43	1.73
18854640--18854673	2	17.0	2	100	0	68	50	0	50	0	1.00
18857759--18857817	2	31.0	2	85	10	79	49	1	1	47	1.21
18858637--18858687	26	2.0	26	88	0	75	35	3	1	58	1.28
18866540--18866647	34	3.1	34	64	24	82	13	38	8	38	1.75
18877058--18877103	20	2.3	20	88	7	67	32	4	17	45	1.68
18877148--18877200	28	1.9	27	88	3	79	30	18	22	28	1.98
18877148--18877206	28	2.1	28	84	6	75	30	20	23	25	1.98
18885097--18885142	20	2.3	20	88	7	67	32	4	17	45	1.68
18885187--18885239	28	1.9	27	88	3	79	30	18	22	28	1.98
18885187--18885245	28	2.1	28	84	6	75	30	20	23	25	1.98
18891199--18891340	42	3.4	42	91	0	221	21	21	33	23	1.97
18893096--18893142	18	2.6	18	74	12	51	36	8	0	55	1.31
18893573--18893654	21	3.9	21	86	0	119	31	18	25	24	1.97
18893571--18893654	42	2.0	42	100	0	168	30	19	26	23	1.98
18893575--18893667	42	2.2	42	94	0	159	34	17	24	23	1.96
18894188--18894247	2	30.0	2	96	0	111	48	0	0	51	1.00
18896859--18896905	17	2.9	16	79	14	53	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18896900--18896970	25	2.8	26	79	14	87	46	0	0	53	1.00
18896918--18896951	17	2.0	17	100	0	68	47	0	0	52	1.00
18898798--18898855	2	29.0	2	79	6	64	44	1	5	48	1.35
18898946--18899192	39	6.6	36	80	3	199	27	36	12	23	1.91
18898946--18899156	39	5.6	39	84	2	245	27	34	12	24	1.92
18901366--18901448	27	3.1	27	92	0	148	7	24	16	51	1.69
18901435--18901472	5	7.6	5	88	11	60	0	18	2	78	0.86
18901771--18901864	34	2.8	34	81	0	116	38	27	9	24	1.86
18901757--18901865	34	3.2	34	76	6	112	38	26	10	24	1.87
18902239--18902275	17	2.0	20	85	15	53	37	0	0	62	0.96
18906996--18907033	19	2.0	19	100	0	76	26	0	31	42	1.56
18907086--18907157	28	2.6	28	79	0	81	34	8	18	38	1.80
18919078--18919123	20	2.3	20	96	0	83	45	21	4	28	1.71
18920100--18920302	108	1.9	108	90	4	329	34	14	4	45	1.66
18922547--18922707	2	80.5	2	79	11	179	48	2	3	45	1.31
18924262--18924300	21	1.9	21	85	15	55	61	10	5	23	1.48
18929356--18929417	4	15.5	4	93	0	97	46	0	4	48	1.23
18929356--18929417	6	10.3	6	91	0	97	46	0	4	48	1.23
18929458--18929583	43	3.0	42	90	2	189	22	32	23	22	1.98
18933249--18933457	54	3.8	55	87	3	278	22	39	15	22	1.92
18934618--18934740	35	3.5	36	82	7	155	26	23	3	46	1.68
18934833--18934927	45	2.0	46	90	10	147	8	37	6	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18935470--18935514	14	3.2	15	75	15	51	44	0	0	55	0.99
18937541--18937704	31	5.3	30	73	11	127	34	17	17	30	1.93
18937527--18937704	61	2.9	63	84	5	202	37	16	17	28	1.92
18937534--18937704	62	2.8	62	85	2	202	36	16	17	29	1.92
18940965--18941051	33	2.6	34	83	1	113	31	11	19	37	1.87
18940965--18941071	34	3.2	34	78	4	110	30	9	21	38	1.85
18941306--18941368	25	2.5	25	86	0	90	47	12	22	17	1.81
18943887--18943921	18	2.0	17	88	5	52	51	2	14	31	1.57
18952341--18952443	32	3.1	33	75	10	120	22	14	26	36	1.92
18956023--18956059	19	1.9	19	100	0	74	43	29	0	27	1.55
18961588--18961693	38	2.7	38	83	2	131	21	14	40	23	1.90
18965361--18965499	35	4.1	34	74	11	108	23	15	27	34	1.94
18965362--18965460	32	3.0	33	78	10	112	22	14	27	36	1.92
18968190--18968229	2	20.0	2	84	0	53	50	7	0	42	1.30
18973052--18973164	60	1.9	60	90	0	181	32	22	23	22	1.98
18973250--18973290	21	1.9	22	90	5	66	29	24	21	24	1.99
18973529--18973638	43	2.6	43	88	2	150	20	39	19	21	1.93
18982947--18983166	110	2.0	110	86	0	305	27	5	15	51	1.66
18983721--18983799	38	2.1	38	100	0	158	44	2	10	43	1.51
18985903--18986011	38	2.9	38	91	0	164	29	22	20	27	1.98
18990276--18990313	19	2.0	19	100	0	76	26	0	31	42	1.56
18996341--18996497	67	2.3	67	89	4	228	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18996342--18996470	32	3.8	33	79	16	149	25	11	27	35	1.91
19001261--19001303	20	2.1	21	86	4	61	37	4	18	39	1.72
19009368--19009399	14	2.3	15	89	10	50	28	21	6	43	1.77
19016867--19016983	42	2.8	42	88	2	173	24	33	19	22	1.97
19017742--19017768	3	9.0	3	100	0	54	66	0	33	0	0.92
19023500--19023556	25	2.3	25	78	6	62	47	5	10	36	1.61
19044438--19044491	28	2.0	27	88	3	81	29	22	18	29	1.97
19045664--19045706	13	3.4	13	81	15	54	69	4	23	2	1.18
19067557--19067611	19	2.9	18	81	7	65	16	1	29	52	1.54
19072755--19072793	2	19.5	2	100	0	78	51	0	0	48	1.00
19072841--19072907	33	2.0	34	85	5	93	31	23	13	31	1.93
19073123--19073208	36	2.4	35	78	5	91	39	26	22	11	1.88
19073144--19073262	36	3.3	37	76	8	100	42	28	19	9	1.82
19073159--19073272	37	3.1	36	75	8	106	45	26	19	8	1.79
19075364--19075408	21	2.1	22	87	4	65	40	6	8	44	1.62
19075401--19075475	21	3.5	21	83	3	96	26	4	14	54	1.58
19075401--19075490	43	2.1	43	81	4	101	27	4	13	54	1.58
19078587--19078626	20	2.0	20	95	0	71	40	17	12	30	1.86
19080848--19080921	35	2.2	34	85	4	96	22	14	27	35	1.94
19080897--19081003	55	1.9	56	92	1	180	35	14	18	31	1.91
19086227--19086338	43	2.6	43	83	4	145	25	18	35	20	1.95
19086230--19086351	43	2.8	43	78	7	124	25	17	36	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19086632--19086673	21	2.0	21	90	0	66	35	21	26	16	1.94
19086576--19086743	58	2.8	59	77	7	169	27	22	20	29	1.98
19086860--19086909	19	2.6	19	96	0	91	28	30	24	18	1.97
19089637--19089713	38	2.0	39	97	2	147	24	12	12	49	1.77
19091305--19091399	32	3.0	30	69	14	75	76	7	12	3	1.10
19109379--19109536	78	2.0	78	95	0	280	41	13	9	35	1.77
19111862--19111892	2	15.5	2	100	0	62	51	0	48	0	1.00
19114466--19114507	2	21.0	2	95	0	75	0	47	2	50	1.14
19119105--19119175	21	3.2	20	68	24	54	36	0	7	56	1.27
19119089--19119181	45	2.1	45	97	0	177	35	0	5	59	1.21
19119483--19119537	18	3.0	20	75	22	57	43	1	5	49	1.36
19120785--19120863	34	2.4	33	85	6	97	29	1	1	68	1.05
19120833--19120885	27	1.9	28	81	11	65	28	5	1	64	1.27
19141273--19141393	29	4.2	29	81	1	127	18	24	8	48	1.75
19146656--19146709	22	2.5	22	84	3	74	33	9	12	44	1.75
19152500--19152643	29	5.0	28	76	6	135	35	11	11	42	1.76
19152483--19152602	59	2.1	58	85	4	161	38	9	10	42	1.70
19154317--19154361	21	2.2	20	84	15	56	22	4	4	68	1.25
19155780--19155858	39	2.0	39	95	0	140	27	13	13	44	1.83
19156860--19156897	20	2.0	20	89	5	60	28	0	5	65	1.14
19157966--19158076	55	2.0	55	87	3	161	20	11	36	31	1.89
19160370--19160458	39	2.2	40	88	2	126	24	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19162687--19162784	31	2.9	34	83	10	121	24	38	9	27	1.86
19162676--19162784	37	3.1	36	78	20	140	24	37	9	28	1.86
19165710--19165752	21	2.0	21	81	0	50	30	18	13	37	1.90
19166953--19167088	50	2.7	51	82	4	150	28	14	23	33	1.94
19168459--19168511	3	17.7	3	100	0	106	66	33	0	0	0.92
19175893--19176036	50	2.8	51	81	4	139	31	13	22	31	1.93
19181828--19181904	36	2.2	36	81	6	95	36	25	10	27	1.89
19191105--19191142	17	2.2	18	86	13	53	0	21	5	73	1.02
19191375--19191415	20	2.0	20	100	0	82	34	43	0	21	1.53
19191375--19191424	20	2.5	20	90	6	66	32	46	0	22	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93