genome.fa.s1.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  34  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13430738--13430777	2	20.5	2	94	5	73	50	0	0	50	1.00
13435384--13435417	17	2.0	17	94	0	59	41	2	26	29	1.70
13440368--13440392	4	6.2	4	100	0	50	76	0	0	24	0.80
13449987--13450065	26	3.0	26	81	3	97	27	25	12	34	1.92
13450208--13450235	14	2.0	14	100	0	56	42	7	21	28	1.79
13456319--13456351	15	2.2	15	100	0	66	24	0	0	75	0.80
13459349--13459389	18	2.3	18	87	4	57	60	4	0	34	1.18
13460131--13460179	9	5.6	8	81	13	53	28	0	0	71	0.86
13462071--13462155	2	42.5	2	92	0	143	47	1	2	49	1.22
13463287--13463473	99	1.9	99	81	0	230	32	12	21	33	1.91
13463616--13463653	20	2.0	20	85	10	53	15	10	13	60	1.59
13465031--13465108	40	2.0	40	89	0	120	38	21	19	20	1.94
13467475--13467513	16	2.4	16	87	8	53	74	5	0	20	1.01
13468225--13468474	55	4.6	54	76	13	226	31	17	12	38	1.86
13468528--13468581	10	5.7	9	78	10	54	79	3	3	12	1.00
13471475--13471525	25	2.0	25	88	0	75	35	13	19	31	1.91
13473216--13473274	18	3.1	18	72	13	64	35	32	16	15	1.90
13473209--13473299	21	4.7	19	69	11	60	32	30	20	15	1.94
13473209--13473324	39	3.0	39	88	0	169	33	28	19	18	1.95
13475633--13475670	12	3.2	12	88	0	58	18	34	0	47	1.49
13481515--13481558	2	22.0	2	80	0	52	43	2	6	47	1.42
13483784--13483909	63	2.0	63	84	6	166	25	11	16	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13485011--13485379	196	1.9	196	87	3	546	25	19	9	45	1.79
13488467--13488795	164	2.0	164	91	1	534	27	15	13	42	1.85
13489969--13490024	20	2.8	20	70	20	53	57	25	0	17	1.41
13490466--13490527	29	2.2	28	78	18	67	32	4	1	61	1.27
13494174--13494337	72	2.3	72	91	0	256	40	20	18	20	1.92
13494174--13494344	24	7.1	24	82	5	202	39	19	19	21	1.92
13494381--13494456	24	3.0	25	77	14	84	44	15	13	26	1.83
13494383--13494462	26	3.2	25	78	7	81	46	15	11	27	1.79
13494407--13494529	29	4.3	29	77	16	100	39	12	13	34	1.82
13494453--13494529	29	2.7	29	88	4	104	38	10	12	37	1.78
13494612--13494644	17	1.9	17	100	0	66	36	6	21	36	1.78
13503408--13503646	117	2.0	117	94	0	415	23	25	15	35	1.94
13504927--13505145	23	9.7	23	82	5	250	29	14	19	36	1.91
13504927--13505145	44	4.8	44	81	6	242	29	14	19	36	1.91
13511325--13511370	21	2.2	21	84	0	56	45	4	26	23	1.71
13511584--13511682	42	2.4	42	94	0	171	22	16	31	30	1.95
13511609--13511733	42	3.0	42	86	0	160	20	17	31	31	1.95
13511584--13511726	21	6.8	21	74	4	128	20	16	32	30	1.95
13514739--13515017	107	2.6	107	83	2	346	27	16	25	30	1.97
13514979--13515053	31	2.4	31	84	0	96	30	16	29	24	1.96
13514894--13515298	138	2.9	138	86	2	546	26	18	27	28	1.98
13515118--13515191	31	2.4	31	86	0	103	25	13	31	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13514874--13515326	138	3.3	137	80	6	495	26	18	27	27	1.98
13518062--13518121	8	7.4	8	75	16	52	46	0	0	53	1.00
13518073--13518134	22	2.7	22	79	18	65	45	1	0	53	1.10
13518074--13518117	14	2.8	17	74	22	51	45	0	0	54	0.99
13518181--13518261	24	3.1	25	77	13	67	56	1	1	40	1.15
13518181--13518261	25	3.1	24	77	16	65	56	1	1	40	1.15
13518567--13518794	31	7.4	31	92	0	348	34	19	14	30	1.92
13519506--13519554	23	2.1	23	88	0	71	28	26	20	24	1.99
13533960--13534004	17	2.6	18	82	13	58	64	6	0	28	1.19
13537604--13537654	24	2.2	23	82	10	59	15	19	5	58	1.57
13537762--13537804	22	2.0	22	86	9	61	4	25	2	67	1.22
13537621--13537907	147	1.9	149	95	3	510	18	13	5	62	1.48
13537664--13537962	147	2.0	146	84	7	383	21	11	5	61	1.49
13538580--13538604	3	8.3	3	100	0	50	36	0	0	64	0.94
13551350--13551391	21	2.0	21	86	9	59	64	9	2	23	1.35
13551428--13551488	23	2.7	23	100	0	122	37	18	4	39	1.72
13552403--13552458	17	3.2	17	76	19	53	50	1	1	46	1.22
13553613--13553661	24	2.0	24	88	0	71	22	30	12	34	1.91
13556052--13556118	2	33.0	2	89	8	100	49	2	0	46	1.17
13568435--13568492	18	3.2	18	92	0	89	51	12	10	25	1.70
13571908--13572065	82	1.9	82	88	2	237	45	8	13	32	1.73
13580755--13580795	20	2.0	20	90	0	64	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13580742--13580799	28	2.1	27	84	9	73	48	0	0	51	1.00
13588029--13588263	82	2.9	79	73	14	246	42	13	13	31	1.82
13588029--13588351	160	2.0	161	90	1	506	43	12	13	30	1.81
13590471--13590540	3	22.7	3	74	11	52	68	2	4	24	1.21
13593776--13593844	29	2.4	27	79	15	68	28	11	2	56	1.49
13594696--13594723	14	2.0	14	100	0	56	64	7	0	28	1.20
13594866--13594890	13	1.9	13	100	0	50	24	0	0	76	0.80
13598064--13598210	78	1.9	77	95	1	267	34	12	14	38	1.84
13598138--13598524	197	2.0	197	96	0	704	33	17	19	28	1.95
13606410--13606467	23	2.5	23	83	5	73	22	13	29	34	1.93
13606361--13606589	113	2.0	114	85	5	309	22	12	28	35	1.91
13608729--13608774	24	1.9	24	95	0	83	30	17	30	21	1.96
13609609--13609681	38	1.9	38	100	0	146	36	19	15	28	1.92
13610501--13610561	26	2.3	26	83	5	70	22	14	4	57	1.57
13611148--13611310	23	7.0	23	65	12	100	26	12	25	34	1.92
13611148--13611259	46	2.4	46	75	12	113	25	11	25	37	1.90
13611020--13611388	139	2.7	139	86	3	523	28	11	24	34	1.91
13610977--13611397	69	6.1	69	75	3	346	28	11	24	35	1.90
13611148--13611411	23	11.5	22	64	13	95	27	12	25	34	1.92
13614812--13614848	15	2.5	15	90	0	65	56	18	10	13	1.66
13617755--13617871	42	2.8	42	90	0	171	26	22	17	33	1.96
13618810--13620057	207	6.1	206	83	3	1349	40	24	12	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13619383--13619441	22	2.7	21	82	7	64	47	20	11	20	1.81
13619792--13619833	22	1.9	22	85	0	57	54	16	7	21	1.65
13621079--13621117	12	3.4	11	85	3	51	10	0	5	84	0.76
13626647--13626710	22	2.9	22	80	2	74	46	28	10	14	1.77
13627157--13627196	18	2.2	18	100	0	80	20	10	20	50	1.76
13627157--13627193	8	4.2	9	83	16	51	16	10	21	51	1.74
13628392--13628455	27	2.4	25	78	19	67	53	0	0	46	1.00
13636376--13636536	81	2.0	82	86	3	227	42	8	14	34	1.76
13653166--13653248	24	3.4	24	74	15	82	46	0	1	51	1.08
13653164--13653467	118	2.6	114	81	8	359	39	0	3	56	1.21
13653166--13653336	27	7.0	25	68	24	107	41	0	2	54	1.19
13653306--13653360	21	2.5	22	82	5	67	40	0	3	56	1.17
13653198--13653480	112	2.5	116	80	10	314	39	0	4	56	1.22
13653441--13653490	25	2.0	26	96	4	93	42	0	0	58	0.98
13656343--13656396	18	3.1	17	82	10	63	46	44	0	9	1.35
13660655--13660715	30	2.0	30	90	0	95	44	4	14	36	1.67
13676877--13676999	34	3.5	36	80	10	105	21	43	14	19	1.87
13676878--13677138	70	3.8	69	74	13	214	21	41	16	20	1.90
13676903--13677138	34	6.8	34	79	11	178	21	41	16	21	1.90
13676903--13677138	104	2.3	105	79	9	277	21	41	16	21	1.90
13679709--13679932	80	2.8	80	87	0	304	21	8	31	37	1.85
13679706--13679985	81	3.5	80	85	3	330	21	9	31	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13680011--13680155	22	6.5	23	71	4	91	19	13	28	38	1.89
13680982--13681041	23	2.7	22	79	5	66	18	10	26	45	1.81
13680993--13681114	22	5.5	22	67	10	68	22	9	27	40	1.86
13681116--13681254	68	2.0	69	81	1	163	25	12	28	33	1.92
13681119--13681253	45	3.0	46	84	2	173	26	12	26	34	1.92
13681118--13681245	23	5.6	23	78	1	132	27	11	26	34	1.91
13681125--13681269	23	6.4	22	76	7	85	24	13	26	34	1.93
13686015--13686057	22	2.0	22	81	9	52	18	9	27	44	1.80
13688665--13688742	34	2.3	34	82	6	95	57	19	1	21	1.47
13691715--13691815	38	2.6	40	81	9	120	21	14	38	24	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93