Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  93  of  93  ( 11113 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37266896--37266922
4
6.8
4
100
0
54
77
0
22
0
0.76
37270773--37271114
114
3.0
114
100
0
684
35
22
17
23
1.95
37280254--37280342
37
2.4
38
83
7
112
7
41
12
38
1.72
37281880--37281929
20
2.5
20
93
0
82
50
4
10
36
1.55
37282396--37282435
20
2.0
20
90
0
62
55
5
30
10
1.54
37283202--37283251
16
3.4
16
73
21
63
66
10
0
24
1.22
37283194--37283282
28
3.2
28
93
0
142
66
10
1
22
1.28
37283919--37283962
12
4.0
12
72
22
51
65
6
6
20
1.39
37288386--37288545
35
4.6
35
83
0
194
43
15
29
12
1.83
37291444--37291495
24
2.2
24
86
3
70
5
30
0
63
1.18
37292899--37292945
2
23.5
2
100
0
94
51
0
0
48
1.00
37292977--37293022
2
23.0
2
100
0
92
50
0
0
50
1.00
37294227--37294279
21
2.5
22
81
12
65
60
0
0
39
0.97
37295163--37295205
22
2.1
20
83
12
52
81
4
6
6
0.98
37295430--37295515
30
2.8
31
82
3
102
29
0
12
58
1.35
37295460--37295536
10
7.7
10
74
9
50
32
0
12
54
1.39
37295522--37295563
19
2.2
19
91
8
68
33
2
7
57
1.39
37295521--37295564
20
2.2
20
84
15
65
31
2
6
59
1.36
37295694--37298149
10
248.7
10
65
16
448
31
2
15
50
1.56
37295890--37295988
11
9.6
11
73
17
63
35
4
13
47
1.61
37295856--37295978
32
3.9
31
73
17
94
34
4
12
49
1.59
37295861--37296009
21
7.3
20
70
14
74
33
3
11
51
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37296497--37296527
16
2.0
15
93
6
53
35
0
19
45
1.51
37296383--37296564
87
2.1
86
80
9
201
28
0
17
53
1.44
37296688--37296797
21
5.3
20
70
14
71
25
2
14
57
1.51
37297143--37297219
21
3.7
21
81
10
88
22
3
20
53
1.62
37297318--37297381
19
3.3
19
75
16
60
28
1
15
54
1.50
37297403--37297495
19
4.8
19
78
10
66
34
1
16
48
1.53
37297389--37297454
29
2.2
30
76
7
73
27
1
18
53
1.54
37297616--37297661
22
2.2
21
88
7
67
32
0
13
54
1.39
37297625--37297703
22
3.6
21
76
10
70
29
1
13
55
1.46
37297607--37297692
31
2.8
30
79
13
93
30
1
13
54
1.47
37297847--37297904
29
2.0
29
90
10
91
37
0
13
48
1.43
37297862--37298077
85
2.5
84
82
7
265
33
2
13
50
1.54
37299207--37299245
20
2.0
20
85
10
53
56
12
0
30
1.37
37299507--37299581
21
3.5
22
74
20
70
52
13
1
33
1.49
37299593--37299678
10
8.3
10
68
16
50
48
16
8
26
1.73
37299598--37299671
21
3.5
22
78
7
82
45
17
9
27
1.79
37299861--37299924
10
6.3
10
71
16
51
50
18
1
29
1.57
37300040--37300078
19
2.1
19
90
4
62
58
15
2
23
1.49
37300152--37300228
10
7.4
10
70
8
55
55
14
3
25
1.56
37300151--37300263
32
3.6
32
70
13
74
51
17
4
26
1.64
37300442--37300500
11
5.4
11
69
15
50
62
11
0
25
1.29
37300428--37300520
32
2.9
32
74
15
93
55
15
0
29
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37300675--37300724
21
2.3
23
80
16
63
50
20
4
26
1.66
37301059--37301146
31
2.8
31
84
3
106
44
18
6
30
1.75
37301346--37301398
21
2.5
21
84
6
63
52
11
7
28
1.64
37301504--37302114
10
60.1
10
62
20
62
50
16
5
27
1.68
37301797--37302114
21
15.8
20
65
15
84
51
16
5
27
1.64
37301944--37302117
20
8.7
20
67
18
78
51
16
4
27
1.64
37302297--37302365
31
2.3
31
84
2
86
53
15
5
24
1.64
37302619--37302664
21
2.2
21
84
3
58
50
17
8
23
1.74
37302980--37303035
21
2.7
20
81
8
58
57
14
1
26
1.48
37302988--37303037
21
2.4
22
80
10
59
54
14
2
30
1.51
37302968--37303099
31
4.2
30
77
15
99
53
16
3
26
1.60
37301761--37303305
653
2.3
659
86
5
2156
50
15
6
28
1.68
37303250--37303290
21
2.0
21
85
9
57
46
19
2
31
1.63
37304501--37304568
10
6.5
10
73
18
50
54
13
5
26
1.61
37304500--37304580
22
3.7
22
71
21
55
54
11
6
28
1.59
37306078--37306557
7
68.9
7
81
6
381
35
50
0
13
1.48
37306679--37306739
21
2.9
21
85
0
77
27
52
14
4
1.62
37308887--37309342
7
65.1
7
78
11
337
11
0
48
39
1.45
37308887--37309456
14
40.8
14
79
8
276
12
2
48
35
1.55
37309313--37309456
7
20.9
7
86
6
84
14
9
52
23
1.71
37309313--37309455
21
6.9
21
80
4
139
14
9
52
23
1.71
37309455--37309496
1
42.0
1
100
0
84
0
0
0
100
0.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37309812--37309838
1
27.0
1
100
0
54
0
0
0
100
0.00
37316681--37316722
12
3.2
14
80
16
54
7
0
28
64
1.20
37316701--37316880
5
33.2
5
90
8
225
18
0
25
56
1.42
37316700--37317109
35
13.9
28
84
13
305
16
0
31
50
1.45
37316700--37317110
63
7.6
52
85
13
338
16
0
32
50
1.45
37316869--37317067
7
28.4
7
94
4
325
14
0
40
45
1.45
37317069--37317109
5
8.2
5
100
0
82
19
0
21
58
1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93

The End!