genome.fa.s1.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  52  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19925932--19925962	14	2.2	14	94	0	53	19	22	9	48	1.78
19926442--19926493	21	2.5	20	78	3	59	36	11	17	34	1.86
19927118--19927438	80	4.1	78	83	7	341	33	23	9	33	1.87
19927118--19927438	160	2.0	157	83	8	395	33	23	9	33	1.87
19929865--19929954	22	4.1	22	75	7	78	25	16	21	36	1.94
19929892--19930043	82	1.9	81	86	4	216	23	14	20	41	1.89
19929954--19930035	22	3.8	21	73	10	58	20	14	20	43	1.87
19929911--19930087	81	2.2	82	81	3	205	23	12	23	40	1.89
19930079--19930111	16	2.1	16	94	0	57	21	18	30	30	1.97
19930078--19930220	38	3.7	38	70	10	103	23	15	23	37	1.93
19930076--19930256	77	2.4	76	85	3	247	23	13	23	40	1.89
19930200--19930284	38	2.2	38	87	0	116	21	9	24	44	1.81
19930215--19930295	38	2.1	38	81	0	90	24	9	23	41	1.84
19930288--19930354	22	3.0	22	82	0	80	23	11	26	37	1.90
19934481--19934569	46	1.9	46	88	4	135	23	39	1	35	1.62
19935816--19935883	34	2.0	34	85	0	91	30	27	11	29	1.92
19946929--19947102	29	6.0	28	81	11	197	39	9	13	37	1.77
19946929--19947102	59	3.0	57	85	8	226	39	9	13	37	1.77
19947502--19947610	55	2.0	54	100	0	209	12	36	3	45	1.60
19956303--19956356	23	2.3	23	90	0	90	35	35	9	20	1.85
19956344--19956473	23	5.8	22	75	7	82	40	26	10	21	1.86
19956290--19956445	45	3.4	45	73	0	132	40	28	10	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19956290--19956502	45	4.7	45	72	7	116	39	29	10	20	1.86
19956428--19956518	22	4.1	22	79	12	89	34	32	10	21	1.89
19958768--19958803	2	18.0	2	100	0	72	50	0	0	50	1.00
19959793--19959852	31	2.0	30	83	3	75	41	5	28	25	1.76
19960161--19960233	31	2.4	31	100	0	146	35	4	34	26	1.75
19960417--19960469	27	1.9	28	81	11	65	50	15	20	13	1.76
19960472--19960512	21	2.0	21	90	0	64	68	0	31	0	0.90
19961463--19961487	13	1.9	13	100	0	50	48	4	8	40	1.51
19963823--19963994	61	2.8	62	88	3	240	24	22	19	33	1.97
19964753--19964812	25	2.4	25	85	0	75	33	16	26	23	1.96
19968551--19968597	5	9.4	5	86	9	69	76	2	19	2	0.99
19970773--19970813	11	3.7	11	96	0	64	29	0	21	48	1.50
19975349--19975457	34	3.2	34	83	11	125	28	14	27	29	1.95
19975586--19975640	5	11.6	5	90	9	73	78	1	20	0	0.85
19975627--19975690	26	2.5	26	87	5	85	54	14	21	9	1.67
19978358--19978418	24	2.5	24	86	5	77	18	22	11	47	1.80
19978417--19978452	10	3.6	10	92	7	56	0	19	0	80	0.71
19978410--19978449	16	2.5	16	88	8	55	2	17	0	80	0.83
19982038--19982062	13	1.9	13	100	0	50	48	8	0	44	1.32
20021899--20021923	13	1.9	13	100	0	50	44	0	8	48	1.32
20023121--20023166	15	3.1	15	87	9	60	23	0	19	56	1.42
20023201--20023233	14	2.3	15	94	5	59	39	0	21	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20023202--20023241	19	2.1	19	90	0	62	35	2	25	37	1.69
20023201--20023233	5	6.8	5	93	6	59	39	0	21	39	1.53
20029660--20029699	5	8.0	5	91	0	62	37	22	0	40	1.54
20029745--20029791	15	3.1	15	84	0	58	51	17	2	29	1.57
20031169--20031193	13	1.9	13	100	0	50	48	8	0	44	1.32
20033712--20033764	28	1.9	28	92	3	90	33	22	13	30	1.92
20033807--20033844	19	2.0	19	89	0	58	42	31	0	26	1.56
20052726--20052769	22	2.0	22	86	0	61	43	18	6	31	1.76
20055269--20055321	28	1.9	27	84	3	70	32	20	15	32	1.93
20077249--20077286	20	1.9	20	100	0	76	28	5	21	44	1.73
20094519--20094556	20	1.9	20	100	0	76	55	21	5	18	1.62
20097985--20098009	13	1.9	13	100	0	50	48	8	0	44	1.32
20102144--20102208	28	2.3	28	97	0	121	9	20	16	53	1.70
20102228--20102293	31	2.1	32	85	5	89	15	21	13	50	1.78
20102226--20102317	25	3.2	30	77	17	104	14	20	14	51	1.76
20102256--20102313	25	2.3	25	96	0	107	15	22	13	48	1.80
20102312--20102346	10	3.7	9	85	14	52	0	14	0	85	0.59
20102310--20102344	16	2.3	15	90	5	52	0	14	0	85	0.59
20102481--20102555	34	2.2	34	90	0	123	34	21	12	32	1.90
20102620--20102667	25	1.9	25	83	8	62	25	27	6	41	1.79
20103192--20103231	19	2.0	21	85	9	57	40	0	0	60	0.97
20111975--20112139	77	2.1	77	84	7	219	41	6	10	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20113243--20113285	22	2.0	21	86	13	61	69	0	23	6	1.12
20114859--20114916	25	2.3	25	88	5	82	37	17	24	20	1.93
20116092--20116134	15	2.8	15	85	3	50	55	2	18	23	1.54
20117761--20117816	17	3.3	16	75	18	51	42	3	1	51	1.29
20123440--20123482	17	2.7	15	79	10	50	67	2	30	0	1.03
20127789--20127850	31	2.0	31	90	0	97	43	9	12	33	1.76
20129317--20129342	2	13.0	2	100	0	52	50	0	50	0	1.00
20143055--20143101	2	23.5	2	100	0	94	51	0	0	48	1.00
20146358--20146446	28	3.2	28	69	15	76	32	26	13	26	1.94
20146361--20146444	27	3.1	27	70	16	73	30	26	14	28	1.95
20150130--20150195	33	2.0	33	100	0	132	51	15	9	24	1.72
20166194--20166308	43	2.7	43	87	1	169	22	35	20	21	1.96
20167380--20167425	23	1.9	25	82	8	60	21	26	0	52	1.47
20169209--20169350	42	3.4	42	87	0	212	23	32	21	22	1.98
20173771--20173882	58	1.9	58	88	0	170	42	16	4	35	1.69
20175216--20175296	36	2.4	34	78	12	85	25	12	25	35	1.91
20175464--20175504	5	8.6	5	85	15	52	80	2	17	0	0.82
20175494--20175546	27	2.0	27	88	0	79	50	18	22	7	1.72
20184743--20184780	19	2.0	19	100	0	76	42	31	0	26	1.56
20188854--20189233	190	2.0	190	92	1	638	35	15	13	36	1.86
20201575--20201614	20	2.0	21	90	5	64	32	17	12	37	1.87
20202022--20202082	27	2.3	27	91	0	104	31	22	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20204509--20204631	43	2.9	42	86	5	160	26	14	34	24	1.94
20212208--20212250	14	3.1	14	86	0	59	46	11	2	39	1.53
20213696--20213848	49	3.1	49	81	0	171	24	11	27	36	1.89
20216836--20216872	10	3.5	11	82	10	51	24	0	21	54	1.45
20222675--20222746	28	2.6	27	76	6	72	26	22	15	36	1.93
20222725--20222795	28	2.5	28	93	0	115	36	32	8	22	1.84
20226609--20226717	58	1.9	57	90	1	173	38	9	14	37	1.78
20233185--20233343	38	4.2	38	86	1	221	28	34	12	24	1.92
20233444--20233472	2	14.5	2	100	0	58	51	0	0	48	1.00
20235776--20235814	15	2.6	15	87	0	51	20	23	2	53	1.57
20236027--20236213	80	2.5	70	78	16	223	35	12	9	42	1.76
20240337--20240451	58	2.0	57	96	0	203	22	41	15	19	1.89
20246348--20246498	36	4.2	36	83	5	189	30	21	14	33	1.93
20246348--20246498	71	2.1	72	83	3	189	30	21	14	33	1.93
20246864--20247040	35	5.2	35	74	16	124	33	28	14	23	1.94
20246895--20247043	35	4.5	32	76	15	149	34	28	14	22	1.93
20246868--20247043	67	2.6	66	84	5	237	34	27	14	23	1.94
20249597--20249635	20	2.0	20	89	0	60	38	20	2	38	1.66
20254405--20254580	67	2.6	67	88	3	257	34	25	14	26	1.94
20254432--20254580	35	4.5	32	75	12	138	36	26	12	24	1.91
20257208--20257265	26	2.2	26	96	0	107	24	18	29	27	1.98
20264285--20264383	45	2.2	45	83	7	121	59	6	26	8	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20271134--20271236	38	2.6	40	83	6	131	20	15	41	22	1.89
20273115--20273159	22	2.1	21	83	4	54	40	0	28	31	1.57
20274453--20274483	16	1.9	16	93	0	53	74	9	9	6	1.23
20276956--20277015	31	2.0	30	90	3	93	36	3	18	41	1.67
20283041--20283252	36	5.7	36	72	13	151	22	11	39	26	1.88
20283076--20283179	39	2.7	39	80	3	111	23	12	37	26	1.90
20283041--20283248	114	1.8	113	82	3	265	21	12	39	26	1.88
20286907--20287025	36	3.3	36	84	3	152	22	12	35	29	1.91
20304767--20304886	28	4.3	28	81	0	114	28	15	26	30	1.96
20308302--20308360	4	14.2	4	76	16	50	1	30	0	67	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93