genome.fa.s1.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  84  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32402666--32402704	1	39.0	1	84	0	51	92	0	7	0	0.39
32410127--32410184	28	2.0	29	87	9	84	39	0	1	58	1.08
32414699--32414764	33	2.0	33	100	0	132	39	21	9	30	1.84
32418511--32418542	15	2.1	15	94	0	55	75	3	18	3	1.08
32420796--32420829	14	2.7	12	86	13	50	20	2	0	76	0.92
32420796--32420829	6	5.3	6	86	13	50	20	2	0	76	0.92
32424208--32424276	22	3.0	22	79	12	68	30	10	15	43	1.80
32424255--32424297	22	1.9	23	85	4	61	30	13	23	32	1.93
32424283--32424343	23	2.7	23	92	0	95	26	13	27	32	1.93
32425948--32426022	31	2.5	30	84	4	98	33	12	16	38	1.85
32426008--32426245	45	5.3	45	85	2	271	29	19	17	33	1.94
32426008--32426245	90	2.6	90	86	1	307	29	19	17	33	1.94
32429074--32429108	2	17.5	2	93	0	61	45	0	2	51	1.16
32443950--32443993	21	2.0	22	91	4	72	59	2	29	9	1.41
32446732--32447316	201	2.9	201	96	0	1046	29	27	19	23	1.98
32450578--32450607	3	10.0	3	100	0	60	33	0	0	66	0.92
32470718--32470853	61	2.2	62	83	9	161	40	5	13	39	1.69
32471507--32471537	6	5.2	6	100	0	62	16	83	0	0	0.64
32484823--32484880	6	9.0	6	80	10	53	77	3	15	3	1.04
32484972--32485078	52	2.1	52	83	8	132	45	4	13	36	1.64
32486412--32486537	65	1.9	65	98	0	243	40	16	23	19	1.91
32487116--32487311	99	2.0	99	87	2	286	36	6	28	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32490418--32490511	30	3.0	31	87	4	136	56	2	19	22	1.52
32507858--32507882	11	2.3	11	100	0	50	16	0	0	84	0.63
32519077--32519126	24	2.1	23	85	3	64	38	4	6	52	1.45
32523679--32523854	88	2.0	88	98	0	343	33	19	8	38	1.82
32524155--32524188	17	2.0	17	94	0	59	38	5	8	47	1.59
32526346--32526375	15	2.0	15	93	0	51	43	26	0	30	1.55
32526344--32526377	17	2.1	16	88	5	50	41	29	0	29	1.57
32526498--32526535	15	2.5	15	87	8	51	15	7	0	76	1.01
32526589--32526642	27	1.9	28	85	7	74	29	5	7	57	1.49
32543595--32543647	3	16.0	3	78	18	52	32	3	33	30	1.76
32543595--32543647	10	5.3	9	79	18	52	32	3	33	30	1.76
32543597--32543638	21	2.0	21	86	9	59	35	4	30	28	1.78
32543597--32543638	7	6.0	7	86	10	50	35	4	30	28	1.78
32545724--32545769	23	2.0	23	82	0	56	47	6	2	43	1.41
32570800--32570911	59	1.9	59	90	1	181	21	12	25	41	1.88
32578316--32578361	5	10.0	5	88	9	55	80	0	2	17	0.81
32578317--32578361	9	5.0	9	83	8	56	80	0	2	17	0.82
32578317--32578361	22	2.0	23	86	4	65	80	0	2	17	0.82
32588633--32588677	23	2.0	23	86	0	63	13	28	4	53	1.59
32589041--32589191	45	3.4	45	83	0	178	24	20	21	33	1.97
32589117--32589260	68	2.1	69	81	1	164	24	18	20	37	1.94
32589161--32589211	24	2.1	24	88	0	75	21	15	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32589178--32589301	45	2.8	45	83	0	158	25	18	20	36	1.95
32589234--32589370	69	2.0	69	85	5	188	26	15	20	37	1.92
32589081--32589370	114	2.6	113	84	2	366	25	17	20	37	1.93
32603275--32603341	16	4.2	16	73	19	52	34	0	1	64	1.03
32603350--32603435	32	2.7	32	66	8	77	37	3	1	58	1.23
32604703--32604755	2	27.5	2	90	7	83	49	1	0	49	1.12
32606106--32606218	57	1.9	59	82	8	140	33	3	1	61	1.24
32606189--32606251	33	1.9	33	86	0	90	28	3	1	66	1.16
32608483--32608515	6	5.5	6	92	0	57	18	48	15	18	1.81
32609501--32609581	2	42.0	2	80	16	73	44	4	0	49	1.24
32609484--32609584	51	2.0	50	96	3	177	41	7	0	49	1.32
32626316--32626393	26	3.0	26	83	7	88	51	0	1	47	1.09
32648273--32648336	29	2.2	29	88	2	92	28	12	20	39	1.89
32681838--32681883	21	2.2	21	88	7	67	34	0	6	58	1.24
32707068--32707098	15	2.0	16	93	6	55	64	0	0	35	0.94
32707524--32707564	17	2.3	19	79	8	50	43	7	2	46	1.44
32707345--32708323	360	2.8	344	79	10	1061	40	6	6	46	1.56
32708277--32708321	15	2.8	16	83	16	58	53	4	0	42	1.21
32717525--32717558	16	2.1	17	94	5	61	79	5	11	2	1.02
32731201--32731260	18	3.3	18	76	0	57	30	10	15	45	1.78
32733151--32733180	15	2.0	15	100	0	60	20	26	0	53	1.46
32746216--32746368	77	2.0	76	96	2	272	51	4	11	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32746611--32746703	45	2.1	44	83	2	114	45	5	4	45	1.46
32781530--32781562	2	16.5	2	100	0	66	51	0	0	48	1.00
32782338--32782508	31	5.5	31	87	1	193	39	19	16	24	1.92
32782991--32783145	47	3.3	47	87	8	237	27	25	18	28	1.98
32783136--32783257	47	2.6	47	82	1	129	22	27	18	30	1.98
32783261--32783302	2	21.0	2	100	0	84	50	0	0	50	1.00
32784473--32784583	26	4.0	26	70	19	82	29	5	0	64	1.15
32784466--32784570	50	2.1	50	83	3	131	32	6	0	60	1.22
32786878--32786958	27	3.0	27	75	1	81	45	12	7	34	1.70
32786897--32787392	124	4.0	125	80	4	477	42	11	13	32	1.81
32788560--32788615	28	2.0	28	85	0	76	26	10	10	51	1.69
32788685--32788913	125	1.8	126	81	4	284	30	13	11	43	1.81
32789143--32789194	22	2.4	22	80	3	70	42	0	0	57	0.98
32795579--32795656	32	2.3	34	80	12	90	74	3	6	15	1.17
32795626--32795713	44	2.0	43	97	2	158	57	11	9	20	1.60
32796774--32796979	105	2.0	105	92	0	340	49	11	15	23	1.77
32799154--32799201	26	1.9	24	95	0	69	33	10	18	37	1.85
32805628--32805703	40	1.9	40	86	5	109	36	19	22	21	1.95
32806147--32806261	55	2.1	55	96	0	212	30	24	10	34	1.89
32808072--32808122	2	25.5	2	100	0	102	0	49	0	50	1.00
32816099--32816159	2	31.0	2	78	3	61	0	54	0	44	1.00
32818752--32818783	16	1.9	17	93	6	57	6	3	3	87	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32845207--32845233	13	2.1	13	100	0	54	37	22	18	22	1.95
32848173--32848271	49	2.0	49	94	0	171	26	23	13	37	1.91
32868384--32868414	2	15.5	2	93	0	53	51	3	0	45	1.17
32868826--32868867	21	2.0	21	100	0	84	42	19	23	14	1.87
32873603--32875321	250	6.9	249	84	4	1976	33	9	6	50	1.60
32877198--32877271	25	2.8	26	74	10	69	52	2	2	41	1.29
32894270--32894391	65	1.9	65	87	0	181	26	11	17	45	1.82
32898344--32898395	25	2.0	26	88	3	79	46	26	13	13	1.80
32914698--32914738	21	2.0	20	90	4	64	43	21	4	29	1.73
32914740--32914779	18	2.2	18	100	0	80	25	10	15	50	1.74
32917345--32917371	3	9.0	3	100	0	54	33	33	33	0	1.58
32931261--32931292	15	2.1	15	100	0	64	65	0	0	34	0.93
32931329--32931411	33	2.5	33	84	0	112	38	2	16	42	1.62
32946738--32946778	19	2.2	19	86	0	55	39	2	2	56	1.26
32947316--32947346	16	1.9	16	93	0	53	48	6	9	35	1.62
32947593--32947644	15	3.5	15	84	2	61	67	0	0	32	0.91
32960939--32961269	144	2.3	144	85	1	439	33	16	16	33	1.91
32967275--32967434	77	2.1	77	93	0	275	35	16	23	25	1.95
32983722--32983768	2	25.0	2	87	12	73	51	0	0	48	1.00
32983787--32983825	2	19.0	2	94	5	69	48	0	2	48	1.15
32989593--32989617	2	12.5	2	100	0	50	48	0	52	0	1.00
32989755--32989794	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32992665--32992699	2	17.5	2	93	0	61	45	2	0	51	1.16
32996829--32996855	1	27.0	1	100	0	54	0	100	0	0	0.00
33000243--33000366	60	2.1	60	93	0	212	33	23	7	36	1.82
33003227--33003264	19	2.0	19	89	0	58	34	7	2	55	1.43
33006899--33006928	11	2.7	11	94	0	51	23	36	10	30	1.87
33011369--33011398	15	2.0	15	93	0	51	43	6	43	6	1.57
33025468--33025499	16	2.0	16	93	0	55	78	0	3	18	0.89
33025587--33025624	15	2.8	13	82	17	51	84	0	2	13	0.73
33025669--33025741	12	5.5	15	68	25	65	43	0	1	54	1.08
33025676--33025741	26	2.6	26	85	7	91	42	0	1	56	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93