genome.fa.s1.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  86  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33448975--33449023	23	2.0	25	85	14	68	65	0	0	34	0.93
33449817--33449917	46	2.2	45	79	6	114	45	7	3	42	1.52
33449886--33449931	18	2.4	20	89	7	69	47	4	2	45	1.34
33453192--33453275	2	42.5	2	90	7	136	50	0	0	48	1.01
33453849--33453890	22	1.9	22	85	9	59	38	0	11	50	1.40
33453849--33453898	22	2.3	22	80	10	57	36	0	12	52	1.39
33464395--33464425	2	15.5	2	100	0	62	0	51	0	48	1.00
33466542--33466715	91	1.9	92	86	3	253	32	5	1	60	1.29
33467970--33468011	2	21.0	2	100	0	84	50	0	50	0	1.00
33470394--33470508	56	2.1	56	100	0	230	40	11	10	37	1.75
33471832--33471861	16	1.9	16	93	6	53	30	0	6	63	1.20
33474693--33474881	95	2.0	94	81	9	224	44	6	5	42	1.55
33492939--33493091	24	6.4	23	77	8	137	39	7	47	5	1.57
33492939--33493091	48	3.2	48	77	1	164	39	7	47	5	1.57
33492951--33493085	72	1.9	72	82	3	173	39	7	47	5	1.56
33493107--33493169	24	2.6	24	89	0	90	38	7	52	1	1.40
33493107--33493190	24	3.5	24	83	1	89	38	7	50	4	1.51
33495252--33495430	94	1.9	93	82	6	227	32	24	32	10	1.89
33514360--33514508	78	1.9	78	90	2	237	6	38	4	51	1.46
33514861--33514900	16	2.5	16	80	11	55	27	0	0	72	0.85
33515565--33515711	69	2.1	69	80	8	165	34	8	15	40	1.79
33516381--33516423	3	13.7	3	90	9	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33516680--33516710	15	2.1	15	93	0	53	87	9	3	0	0.66
33516680--33516720	21	1.9	22	95	5	75	85	9	4	0	0.73
33516680--33516721	14	3.0	14	79	10	50	85	9	4	0	0.72
33517386--33517428	10	4.1	11	80	19	56	72	0	2	25	0.97
33517387--33517432	14	3.2	14	84	9	58	69	0	2	28	1.00
33517748--33517782	13	2.8	12	91	8	52	80	0	0	20	0.72
33519236--33519359	21	6.2	20	70	19	71	45	0	0	53	1.06
33519257--33519354	14	7.4	14	68	20	50	44	1	0	54	1.07
33519255--33519303	25	2.0	24	88	4	71	46	2	0	51	1.12
33519214--33519282	25	3.1	21	75	10	59	53	0	0	46	1.00
33519255--33519359	40	2.7	40	80	10	119	43	0	0	55	1.06
33519207--33519359	60	2.5	60	74	13	152	45	0	0	53	1.05
33524999--33525042	23	2.0	22	81	4	52	40	0	6	52	1.28
33525110--33525203	45	2.1	45	83	0	116	45	6	4	43	1.49
33528348--33528502	47	3.5	47	67	16	139	32	14	9	43	1.77
33528332--33528545	86	2.5	86	89	0	329	35	14	7	42	1.74
33528569--33528629	30	2.0	30	90	0	95	31	8	11	49	1.68
33531312--33531376	34	1.9	33	84	3	85	43	4	4	47	1.44
33531771--33531816	22	2.1	22	91	0	74	41	6	0	52	1.27
33547517--33547541	3	8.3	3	100	0	50	68	0	32	0	0.90
33554819--33554881	25	2.4	26	81	5	74	38	7	14	39	1.75
33554814--33555047	27	8.7	27	78	4	197	38	6	12	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33554859--33555045	55	3.4	55	85	1	243	39	5	12	42	1.67
33554843--33555047	82	2.5	82	82	1	232	38	6	12	42	1.68
33555172--33555347	27	6.5	26	75	10	77	38	10	13	38	1.78
33555208--33555256	25	2.0	25	91	0	80	38	12	14	34	1.83
33555233--33555375	55	2.6	55	83	1	180	40	8	11	39	1.71
33555211--33555402	55	3.5	55	77	6	169	39	8	11	40	1.73
33554665--33555422	386	2.0	385	84	2	986	38	8	13	39	1.75
33555199--33555546	27	12.9	27	74	6	213	37	9	12	40	1.76
33573240--33573330	32	2.8	31	85	5	101	63	1	4	30	1.21
33573271--33573330	32	1.9	31	93	3	102	65	0	5	30	1.14
33573271--33573381	27	3.8	30	72	17	83	62	0	5	31	1.24
33573529--33573571	15	2.9	15	86	13	70	39	6	2	51	1.42
33574346--33574389	23	2.0	22	86	8	63	25	6	13	54	1.63
33593775--33593828	23	2.2	25	84	12	69	16	9	1	72	1.19
33603492--33603616	2	61.0	2	78	13	112	46	5	2	44	1.40
33603492--33603640	76	2.0	75	97	0	271	45	7	3	42	1.48
33606908--33606948	2	22.0	2	85	14	61	53	0	0	46	1.00
33606908--33606948	15	2.8	15	96	3	75	53	0	0	46	1.00
33640499--33640583	42	2.0	42	88	0	125	25	20	15	38	1.91
33651220--33651272	2	27.5	2	85	14	76	1	45	0	52	1.11
33651599--33651629	9	3.4	9	90	0	53	41	25	0	32	1.56
33664027--33664052	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33686008--33686060	12	4.4	12	75	0	52	13	58	20	7	1.59
33687090--33687136	24	2.0	24	83	8	60	14	8	2	74	1.15
33687519--33687566	14	3.4	14	77	13	53	35	0	2	62	1.07
33687519--33687574	28	2.0	29	82	10	71	33	0	3	62	1.12
33691012--33691041	2	15.0	2	92	0	51	46	0	3	50	1.18
33694716--33694918	45	4.4	45	81	7	194	35	19	18	26	1.94
33694775--33694960	24	8.0	23	67	15	82	36	17	19	26	1.94
33694793--33695019	114	2.0	114	90	1	357	33	17	21	27	1.96
33694923--33695178	45	5.7	44	79	2	215	32	19	22	25	1.97
33694854--33694987	69	1.9	69	89	3	207	32	16	20	29	1.95
33694854--33695005	69	2.2	69	85	4	200	32	17	21	28	1.95
33695058--33695140	24	3.6	24	70	15	75	32	21	24	21	1.98
33694923--33695176	135	1.9	135	86	3	368	32	18	22	25	1.97
33694923--33695178	90	2.8	90	78	0	269	32	19	22	25	1.97
33695506--33695555	23	2.2	23	85	3	66	52	8	28	12	1.66
33696905--33696933	14	2.1	14	100	0	58	37	0	13	48	1.43
33700793--33700833	14	3.0	15	86	13	54	0	0	58	41	0.98
33709836--33709865	15	2.0	15	93	0	51	43	0	0	56	0.99
33713273--33713330	2	29.0	2	93	6	100	48	0	0	50	1.01
33714287--33714328	22	1.9	22	90	0	66	35	7	11	45	1.69
33714286--33714334	22	2.2	22	81	0	62	42	6	10	40	1.63
33716675--33716709	18	2.0	18	88	5	54	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33718615--33718726	54	2.1	54	98	1	217	23	24	8	43	1.82
33727368--33727452	42	2.0	42	97	0	161	10	16	28	44	1.81
33760298--33760351	18	3.0	18	76	10	56	31	0	1	66	1.02
33760324--33760380	26	2.1	29	81	15	68	33	1	1	63	1.15
33770380--33770410	15	2.1	15	100	0	62	25	12	12	48	1.77
33775130--33775154	9	2.8	9	100	0	50	40	0	36	24	1.55
33787719--33787758	22	1.9	22	85	10	57	62	2	35	0	1.09
33795188--33795225	13	2.8	14	84	8	51	60	5	2	31	1.33
33797874--33797901	2	14.0	2	100	0	56	50	0	0	50	1.00
33799245--33799319	23	3.3	22	73	14	80	53	4	1	41	1.28
33799383--33799438	23	2.4	23	78	0	67	39	5	0	55	1.23
33802836--33802883	25	1.9	25	87	8	71	41	0	2	56	1.11
33802898--33802953	28	2.0	29	82	10	71	50	0	1	48	1.11
33811007--33811050	13	3.5	13	76	17	56	50	0	0	50	1.00
33810994--33811078	25	3.2	26	85	10	109	43	0	0	56	0.99
33811014--33811078	17	3.7	17	73	15	51	44	0	0	55	0.99
33810991--33811103	59	2.0	56	83	10	140	45	0	0	54	0.99
33811275--33811308	15	2.2	16	89	5	52	52	0	0	47	1.00
33811330--33811367	7	5.4	7	81	12	51	13	0	2	84	0.73
33811383--33811486	8	12.6	8	68	17	61	50	0	0	47	1.14
33811388--33811486	24	4.1	23	76	19	85	51	1	1	46	1.14
33811461--33811508	16	2.9	16	87	3	60	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33821849--33821908	30	2.0	30	90	0	93	31	16	15	36	1.90
33824431--33824515	2	43.0	2	93	6	147	50	0	0	48	1.00
33829453--33829488	2	18.0	2	94	0	63	47	0	52	0	1.00
33836172--33836223	22	2.4	21	74	22	54	65	0	0	34	0.93
33837947--33837995	25	2.0	25	88	8	73	26	4	4	65	1.29
33838270--33838364	30	3.2	29	80	5	93	50	6	9	33	1.60
33838309--33838374	30	2.2	30	94	0	114	53	3	4	39	1.37
33839510--33839556	5	9.4	5	77	9	51	74	0	21	4	0.99
33844459--33844519	15	4.3	15	72	16	58	50	1	0	47	1.10
33845076--33845128	23	2.3	23	83	6	63	54	0	41	3	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93