genome.fa.s1.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  91  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36240767--36240812	23	2.0	23	91	0	74	36	8	13	41	1.75
36253535--36253566	15	2.2	14	94	5	55	0	15	0	84	0.63
36253534--36253571	19	2.0	19	89	0	58	2	15	0	81	0.80
36257855--36257901	12	3.8	12	78	15	51	65	0	0	34	0.93
36257866--36257922	16	3.4	17	76	16	57	64	0	1	33	1.04
36257852--36257922	16	4.6	16	69	20	53	63	0	1	35	1.03
36257852--36257921	23	3.1	23	76	12	72	62	0	1	35	1.04
36258524--36258955	212	2.0	214	93	1	742	31	11	20	36	1.88
36285332--36285371	16	2.5	17	84	12	57	72	2	0	25	0.97
36293883--36293961	38	2.1	38	97	0	149	21	17	31	29	1.96
36296190--36296279	33	2.7	33	100	0	180	40	5	12	42	1.66
36296533--36296830	98	3.0	97	85	1	382	38	11	13	36	1.80
36328609--36328647	18	2.2	18	85	0	51	46	0	0	53	1.00
36328901--36328934	10	3.8	9	88	11	52	79	20	0	0	0.73
36330359--36330415	17	3.2	17	76	16	53	45	1	3	49	1.29
36330631--36330669	18	2.2	17	86	13	53	48	2	0	48	1.15
36330760--36330786	2	13.5	2	100	0	54	48	0	0	51	1.00
36333547--36333579	16	2.1	17	88	11	52	78	0	6	15	0.93
36340773--36340811	20	2.1	19	90	9	62	23	5	25	46	1.73
36341947--36341973	3	9.0	3	100	0	54	33	0	0	66	0.92
36347572--36347784	115	1.9	115	93	0	372	21	18	20	39	1.93
36352701--36352730	2	15.0	2	92	0	51	3	50	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36357052--36357081	2	15.0	2	92	0	51	0	3	50	46	1.18
36357085--36357119	1	35.0	1	88	0	52	2	2	94	0	0.37
36365079--36365150	38	1.9	37	83	13	94	40	6	5	47	1.54
36368519--36368581	29	2.1	30	88	5	92	36	12	11	39	1.79
36368586--36368636	24	2.2	23	82	10	59	33	7	15	43	1.76
36368624--36368685	30	2.1	30	90	0	97	35	12	11	40	1.80
36382221--36382276	25	2.2	25	100	0	112	53	14	17	14	1.73
36401450--36401493	23	2.0	23	86	4	63	81	2	15	0	0.78
36412455--36412496	21	2.0	21	95	0	75	35	19	21	23	1.96
36431968--36432019	25	2.1	25	92	0	86	57	7	5	28	1.50
36433265--36433305	15	2.7	16	81	11	50	43	2	2	51	1.28
36452734--36452769	19	1.9	18	88	5	54	55	0	0	44	0.99
36455430--36455470	20	2.0	20	100	0	82	56	0	24	19	1.42
36455433--36455475	20	2.2	20	91	4	70	60	0	18	20	1.36
36459981--36460025	23	2.0	23	86	0	63	55	2	0	42	1.12
36460010--36460051	16	2.6	16	85	7	50	59	2	2	35	1.23
36462866--36462903	15	2.5	15	84	16	51	42	0	2	55	1.14
36471174--36471242	11	7.0	11	74	24	57	66	0	0	33	0.92
36471168--36471224	27	2.1	28	83	9	73	64	0	0	35	0.93
36471174--36471240	15	4.3	15	72	20	66	67	0	0	32	0.91
36478342--36478522	55	3.3	54	74	7	143	14	12	33	39	1.83
36478556--36478639	23	3.7	23	80	0	96	25	17	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36481739--36482001	31	8.5	30	77	6	147	23	15	20	41	1.90
36481739--36482009	62	4.4	62	76	2	249	23	15	19	41	1.90
36482495--36482899	31	13.1	31	78	4	314	40	19	16	24	1.91
36482808--36482889	16	5.2	16	64	30	52	40	20	14	24	1.90
36483474--36483775	47	6.4	47	77	3	295	24	32	15	27	1.96
36483474--36483799	94	3.5	94	82	2	379	24	31	16	27	1.97
36483474--36483831	47	7.6	47	75	6	262	25	31	16	26	1.96
36486055--36486107	22	2.4	22	77	22	58	64	9	0	26	1.24
36486255--36486307	22	2.4	22	100	0	106	64	3	28	3	1.28
36486497--36486531	18	1.9	18	88	11	54	51	0	0	48	1.00
36486996--36487021	8	3.2	8	100	0	52	11	0	0	88	0.52
36487168--36487203	19	1.9	18	88	5	54	55	0	0	44	0.99
36488462--36488716	47	5.4	47	82	0	278	26	17	34	21	1.95
36488516--36488596	23	3.5	22	68	9	63	24	19	37	18	1.94
36488415--36488717	94	3.2	94	84	0	365	26	17	33	22	1.96
36488460--36488710	93	2.7	94	86	1	324	26	17	34	21	1.95
36489177--36489422	31	8.0	30	81	6	215	25	14	19	40	1.89
36489187--36489563	62	6.1	62	79	2	310	26	16	18	38	1.91
36489217--36489563	31	11.2	31	80	4	173	26	17	17	38	1.91
36489175--36489562	93	4.2	93	81	3	361	26	16	18	38	1.92
36491180--36491570	156	2.5	156	86	1	507	35	20	19	24	1.96
36491666--36491907	93	2.6	93	84	5	267	19	20	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36491587--36491819	62	3.7	62	95	1	396	19	18	21	39	1.92
36491587--36491901	62	5.1	62	89	3	332	19	19	21	40	1.92
36491609--36491872	124	2.1	124	88	2	379	18	20	21	39	1.92
36491639--36491901	31	8.5	31	75	10	225	18	20	21	40	1.92
36491729--36491913	93	2.0	93	90	2	291	19	20	20	40	1.92
36493399--36493446	16	3.1	16	81	6	62	35	14	4	45	1.64
36493396--36493461	14	4.5	14	78	10	60	37	13	4	43	1.65
36494120--36494513	93	4.2	93	83	1	387	23	17	19	40	1.91
36494120--36494513	31	12.7	30	73	5	272	23	17	19	40	1.91
36497991--36498069	31	2.5	31	85	4	97	32	22	18	25	1.97
36498142--36498321	55	3.3	54	79	4	182	43	32	10	13	1.78
36500849--36500898	20	2.5	20	90	3	75	56	2	16	26	1.51
36501851--36501901	24	2.1	24	81	0	57	41	19	15	23	1.90
36501808--36501997	69	2.8	68	85	2	220	37	20	18	23	1.94
36501909--36501962	23	2.3	23	87	3	72	38	24	16	20	1.92
36501808--36502007	68	2.9	68	84	3	231	37	20	19	23	1.95
36501944--36502095	45	3.4	45	85	0	205	32	20	23	24	1.98
36505989--36506038	26	1.9	26	91	0	82	28	14	24	34	1.93
36506045--36506120	21	3.6	21	77	10	91	18	14	28	38	1.90
36506023--36506124	43	2.4	43	94	0	177	21	13	27	37	1.91
36506107--36506176	26	2.7	26	88	0	95	24	12	24	38	1.90
36505934--36506190	138	1.9	138	87	1	381	23	13	26	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36508196--36508250	27	2.0	27	100	0	110	67	0	14	18	1.24
36509505--36509536	17	1.9	16	93	6	55	59	0	3	37	1.13
36512075--36512110	19	1.9	18	88	5	54	55	0	0	44	0.99
36512199--36512238	21	2.0	21	90	9	66	50	2	0	47	1.14
36512486--36512518	17	1.9	17	93	0	57	81	18	0	0	0.68
36513238--36514102	336	2.6	332	83	7	1056	45	5	6	41	1.54
36516258--36516297	14	2.8	15	85	14	66	5	40	0	55	1.22
36516262--36516295	13	2.7	12	86	13	50	5	44	0	50	1.26
36517294--36517334	20	2.0	20	95	0	73	56	0	21	21	1.43
36517297--36517345	20	2.5	20	86	3	64	55	2	16	26	1.52
36520640--36520684	23	2.0	23	86	0	63	55	2	0	42	1.12
36520669--36520709	16	2.6	16	88	7	57	56	4	2	36	1.34
36522759--36523583	340	2.4	336	82	8	969	46	5	5	42	1.51
36523490--36523527	15	2.5	15	84	16	51	42	0	2	55	1.14
36524937--36524977	20	2.0	20	95	0	73	56	0	21	21	1.43
36524940--36524988	20	2.5	20	86	3	64	55	2	16	26	1.52
36528447--36528494	14	3.5	13	83	13	60	62	2	0	35	1.07
36528453--36528509	14	4.0	14	80	15	55	61	3	1	33	1.23
36528529--36528561	9	3.8	9	92	8	59	66	0	0	33	0.92
36528527--36528561	17	2.1	17	100	0	70	65	0	0	34	0.93
36528864--36528914	15	3.5	15	76	10	61	72	0	0	27	0.85
36528860--36528923	28	2.3	28	94	0	110	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36528836--36528923	14	6.4	13	71	13	52	63	0	1	35	1.02
36530988--36531152	85	1.9	86	86	6	237	40	7	14	37	1.74
36549192--36549221	6	5.0	6	100	0	60	0	83	0	16	0.65
36562484--36562534	26	2.0	25	92	7	86	47	1	3	47	1.32
36565797--36565839	21	2.2	19	83	8	50	48	0	2	48	1.14
36567118--36567150	11	2.8	12	90	9	50	30	9	0	60	1.27
36567225--36567253	2	14.5	2	100	0	58	51	0	0	48	1.00
36576483--36576535	28	1.9	28	84	3	72	50	11	0	37	1.38
36591036--36591097	27	2.4	25	78	5	70	48	4	3	43	1.40
36591153--36591191	21	1.9	20	84	5	51	48	2	2	46	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93