genome.fa.s1.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  62  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23615086--23615146	25	2.5	24	82	12	70	18	21	8	52	1.71
23615178--23615223	5	9.6	5	83	9	60	2	19	0	78	0.86
23615539--23615621	34	2.4	34	91	0	139	36	32	14	16	1.89
23620184--23620213	11	2.7	11	94	0	51	30	0	23	46	1.52
23624277--23624314	19	2.0	19	94	0	67	26	2	28	42	1.69
23627569--23627607	16	2.4	16	82	4	51	2	30	0	66	1.05
23628472--23628501	12	2.4	13	94	5	53	46	30	0	23	1.52
23629717--23629783	32	2.0	33	91	5	109	38	5	11	43	1.66
23629667--23630113	145	3.0	151	91	5	744	39	7	9	43	1.67
23629872--23630083	34	6.0	33	71	21	139	38	7	11	42	1.69
23630033--23630083	16	3.1	16	74	20	59	39	9	9	41	1.71
23638405--23638440	18	2.0	18	94	0	63	38	19	16	25	1.92
23647211--23647245	18	1.9	18	94	0	61	34	5	42	17	1.73
23649537--23649600	30	2.1	31	82	8	78	31	23	12	32	1.92
23649640--23649736	28	3.6	28	75	14	105	26	18	9	45	1.80
23649614--23649753	25	5.4	25	71	16	95	28	17	12	42	1.85
23649615--23649759	53	2.7	53	90	0	227	28	16	12	42	1.84
23652485--23652541	23	2.5	24	80	8	64	21	15	24	38	1.92
23652504--23652548	23	2.0	23	95	0	81	15	17	24	42	1.88
23652511--23652561	23	2.2	23	82	0	57	17	17	25	39	1.92
23654173--23654212	18	2.2	19	86	4	55	55	2	2	40	1.27
23657361--23657407	24	2.0	24	86	0	67	12	34	12	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23657587--23657634	24	2.0	24	87	0	69	33	14	25	27	1.94
23657614--23657723	45	2.4	45	93	0	184	31	18	29	20	1.96
23657702--23657749	24	2.0	24	91	0	78	37	16	20	25	1.93
23659384--23659435	26	2.0	26	92	0	86	21	11	7	59	1.56
23659377--23659438	26	2.7	23	77	18	65	22	11	6	59	1.54
23662962--23663126	78	2.1	78	87	1	233	18	24	16	40	1.91
23666568--23666615	22	2.2	22	85	7	62	47	25	12	14	1.79
23666477--23667003	112	4.7	111	87	3	716	44	27	11	16	1.81
23666477--23667003	221	2.3	226	87	3	742	44	27	11	16	1.81
23668346--23668580	48	5.2	47	68	17	149	37	24	11	25	1.90
23668369--23668536	40	4.0	40	76	11	147	35	26	11	26	1.91
23668346--23668578	88	2.6	89	88	1	335	37	24	12	25	1.90
23677016--23677048	2	16.5	2	100	0	66	48	0	0	51	1.00
23678818--23678935	60	2.0	60	88	5	175	30	5	19	44	1.75
23679143--23679226	23	3.7	23	86	0	114	21	11	28	38	1.89
23679237--23679308	22	3.3	22	78	3	74	47	22	8	22	1.77
23679253--23679321	22	3.2	22	81	4	86	44	21	10	23	1.82
23680063--23680100	20	2.0	20	89	5	60	26	2	0	71	1.00
23681176--23681297	62	2.0	62	96	0	226	24	16	18	40	1.90
23684755--23684817	24	2.6	25	82	5	67	36	1	1	60	1.16
23686368--23686429	22	2.8	22	80	0	79	27	22	24	25	2.00
23688483--23688642	43	3.7	43	85	4	182	23	33	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23697290--23697397	35	3.1	35	90	0	144	30	30	10	28	1.90
23713295--23713402	43	2.5	43	81	3	128	23	34	18	24	1.96
23719993--23720035	14	3.1	14	76	10	52	58	4	0	37	1.19
23723127--23723151	13	1.9	13	100	0	50	44	0	8	48	1.32
23730484--23730533	4	12.5	4	83	12	59	0	28	0	72	0.86
23730483--23730553	32	2.1	36	87	10	105	0	32	0	67	0.91
23730478--23730546	28	2.4	29	83	9	90	0	33	0	66	0.92
23742566--23742603	19	2.0	19	100	0	76	26	0	31	42	1.56
23744965--23744997	17	1.9	17	88	11	50	42	15	3	39	1.62
23745161--23745306	29	5.1	28	81	11	172	39	13	8	39	1.74
23745161--23745311	57	2.6	57	84	8	200	38	13	8	39	1.75
23751175--23751222	18	2.6	19	93	3	80	39	2	0	58	1.10
23752589--23752676	21	4.1	21	89	1	122	27	17	15	39	1.90
23752589--23752676	42	2.1	43	91	2	142	27	17	15	39	1.90
23756384--23756475	39	2.4	39	86	0	130	33	20	19	26	1.96
23756863--23756981	43	2.8	43	80	2	132	20	34	21	24	1.96
23756999--23757081	2	41.5	2	90	9	134	48	1	0	49	1.09
23762302--23762346	20	2.2	21	84	11	58	28	20	26	24	1.99
23770020--23770165	60	2.4	60	84	0	193	36	23	17	22	1.95
23770020--23770188	60	2.8	59	82	5	171	35	23	18	23	1.96
23770534--23770652	43	2.8	43	81	2	132	21	36	19	23	1.95
23772614--23772654	21	2.0	21	90	0	64	41	12	9	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23773601--23773750	68	2.2	68	83	4	178	37	10	18	34	1.84
23773626--23773798	68	2.6	65	76	13	161	38	9	17	34	1.83
23776464--23776817	177	2.0	177	93	1	611	30	12	12	44	1.79
23780070--23780108	20	1.9	21	84	5	53	5	38	0	56	1.22
23780291--23780315	12	2.1	12	100	0	50	36	32	0	32	1.58
23781948--23782022	31	2.4	31	84	6	98	49	2	4	44	1.35
23781948--23782020	30	2.4	30	88	4	101	49	2	4	43	1.36
23790872--23790896	12	2.1	12	100	0	50	36	0	0	64	0.94
23792268--23792446	60	3.0	60	86	3	236	25	21	32	20	1.98
23798141--23798178	19	2.0	19	100	0	76	26	0	31	42	1.56
23809675--23809706	2	16.0	2	93	0	55	46	0	3	50	1.17
23809747--23809908	42	3.9	42	83	0	207	19	33	22	24	1.97
23811326--23811374	22	2.2	22	88	0	71	40	16	16	26	1.89
23822798--23822830	2	16.5	2	93	0	57	0	0	45	54	0.99
23824806--23825079	62	4.4	62	81	4	302	32	17	24	25	1.97
23825332--23825509	67	2.7	66	84	3	223	35	24	13	26	1.93
23825365--23825477	32	3.4	32	73	11	111	33	25	14	26	1.94
23827143--23827305	35	4.6	35	76	3	157	28	41	12	18	1.86
23827175--23827342	71	2.4	71	87	4	257	26	41	11	19	1.86
23833641--23833829	77	2.6	74	81	12	196	38	12	9	39	1.75
23833704--23833867	77	2.1	77	89	4	251	39	10	8	40	1.71
23835207--23835244	20	1.9	20	100	0	76	28	5	21	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23848976--23849171	55	3.7	52	84	11	231	21	15	36	25	1.93
23849013--23849174	55	2.9	55	91	0	270	22	16	35	25	1.95
23854330--23854359	11	2.7	11	89	0	51	56	0	0	43	0.99
23861042--23861066	13	1.9	13	100	0	50	48	8	4	40	1.51
23865296--23865343	21	2.2	23	88	7	73	60	6	16	16	1.55
23869945--23869987	16	2.7	16	82	10	52	62	11	0	25	1.29
23874589--23874632	20	2.2	20	100	0	88	31	36	11	20	1.88
23877016--23877087	36	2.0	37	86	8	103	34	26	11	27	1.90
23887134--23887260	43	3.0	43	82	2	157	24	16	34	24	1.95
23893911--23894047	63	2.2	63	91	0	220	25	29	18	26	1.98
23894640--23894687	23	2.1	23	84	7	62	35	31	0	33	1.58
23911197--23911268	2	36.0	2	97	0	99	43	0	6	50	1.29
23911312--23911353	2	22.0	2	85	9	61	52	0	0	47	1.00
23913138--23913246	35	3.2	35	77	7	143	27	11	25	34	1.91
23913118--23913258	67	2.1	67	95	0	255	22	12	26	37	1.91
23913116--23913258	35	4.3	33	75	9	128	22	12	27	37	1.90
23920602--23920636	17	2.1	17	94	0	61	40	22	28	8	1.84
23921521--23921637	35	3.4	35	72	11	107	23	11	24	40	1.87
23921518--23921685	67	2.5	67	82	1	212	25	11	22	40	1.88
23921540--23921651	35	3.3	35	71	7	113	27	12	22	37	1.90
23929862--23929941	39	2.1	39	95	0	142	42	21	15	21	1.88
23930287--23930404	43	2.8	44	84	5	152	22	36	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23937380--23937489	43	2.6	43	85	0	139	22	34	17	25	1.96
23939086--23939122	11	3.5	11	78	14	51	67	0	27	5	1.12
23944409--23944439	15	2.1	15	100	0	62	12	6	25	54	1.62
23944597--23944936	26	14.0	26	76	13	314	24	12	25	37	1.91
23944611--23945079	168	2.8	167	86	6	609	24	13	25	37	1.91
23944601--23945079	47	10.0	48	70	21	226	24	12	25	37	1.91
23944599--23945076	26	20.0	23	70	16	202	24	12	25	37	1.91
23945745--23945913	71	2.4	70	77	14	161	60	2	4	31	1.32
23946099--23946159	15	4.1	15	95	0	104	34	32	4	27	1.78
23948200--23948240	17	2.4	17	88	12	57	75	4	7	12	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93