genome.fa.s1.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  51  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19557237--19557608	184	2.0	183	98	0	717	35	18	19	26	1.95
19580931--19580970	20	2.0	20	85	0	53	17	35	7	40	1.78
19585419--19585448	12	2.5	12	94	0	51	33	16	13	36	1.88
19593655--19593829	60	2.9	59	83	3	235	24	32	17	26	1.97
19594595--19594662	5	13.0	5	75	14	57	2	20	0	76	0.92
19594602--19594662	16	3.8	17	81	12	67	3	22	0	73	0.97
19597014--19597075	24	2.6	24	89	0	97	17	19	12	50	1.78
19598064--19598139	18	3.9	19	75	20	68	26	19	30	23	1.98
19598054--19598162	40	2.7	40	91	0	164	30	18	29	22	1.97
19598088--19598161	22	3.5	22	74	20	86	27	18	29	24	1.98
19612471--19612512	22	1.9	22	85	9	59	33	19	4	42	1.72
19612525--19612562	20	1.9	19	89	5	58	42	31	0	26	1.56
19620238--19620335	36	2.7	36	79	0	88	32	15	19	32	1.93
19622328--19622498	28	5.8	29	79	12	179	39	10	11	38	1.76
19622325--19622487	59	2.8	57	82	6	202	38	11	11	39	1.76
19627522--19627644	63	2.0	62	91	1	201	37	17	10	34	1.84
19628230--19628336	51	2.1	51	91	1	171	38	13	5	42	1.67
19643210--19643242	2	16.5	2	100	0	66	51	0	0	48	1.00
19643265--19643312	22	2.2	22	81	7	53	27	4	0	68	1.07
19643285--19643325	9	4.6	9	85	8	57	19	0	0	80	0.71
19643275--19643320	22	2.0	23	87	4	67	21	2	0	76	0.90
19643485--19643512	2	14.0	2	100	0	56	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19644714--19644754	19	2.2	19	91	4	66	46	4	0	48	1.23
19649604--19649634	2	15.5	2	93	0	53	48	3	0	48	1.17
19651343--19651378	19	1.9	19	94	5	65	44	5	0	50	1.25
19656965--19657262	151	2.0	150	95	0	524	34	20	13	31	1.91
19660806--19660865	30	2.1	29	81	6	68	30	8	23	38	1.84
19669799--19669836	13	2.9	13	84	7	51	10	0	2	86	0.66
19674963--19675111	35	4.5	32	75	13	131	36	29	12	21	1.90
19674936--19675111	67	2.6	67	89	3	275	35	28	12	23	1.91
19674932--19675108	35	5.2	33	72	14	130	35	28	12	23	1.91
19689951--19689984	15	2.3	15	90	5	52	52	5	17	23	1.66
19692333--19692507	74	2.4	74	80	1	181	23	20	18	37	1.94
19693000--19693075	22	3.2	22	85	9	89	23	22	9	44	1.81
19693027--19693075	11	4.5	11	97	0	89	20	22	10	46	1.80
19697982--19698048	25	2.6	27	80	9	93	14	20	11	52	1.74
19698035--19698074	16	2.6	16	88	4	55	5	15	0	80	0.88
19698247--19698293	24	1.9	25	83	12	62	38	25	8	27	1.85
19698288--19698362	34	2.2	34	82	0	96	34	22	10	32	1.89
19699855--19699911	30	1.9	30	85	0	78	28	21	33	17	1.96
19703826--19703989	29	5.6	28	82	7	175	40	7	10	40	1.68
19703826--19703988	59	2.8	58	85	4	195	41	7	10	40	1.69
19704147--19704179	17	1.9	17	88	11	50	39	3	15	42	1.62
19712829--19712854	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19713711--19713775	18	3.4	18	69	19	51	43	3	33	20	1.67
19713711--19713762	21	2.5	21	71	20	54	42	3	36	17	1.67
19715316--19715506	27	6.9	27	75	3	157	42	15	7	35	1.74
19715320--19715506	82	2.3	82	84	1	239	42	15	6	35	1.73
19715316--19715506	55	3.5	54	78	3	193	42	15	7	35	1.74
19715539--19715674	55	2.5	55	81	1	148	39	14	10	35	1.80
19715503--19715672	27	6.2	27	77	6	146	38	15	11	34	1.83
19715553--19715780	125	1.8	126	85	2	325	41	13	9	35	1.77
19715634--19715715	43	1.9	43	92	0	137	40	10	12	36	1.78
19715684--19715780	27	3.5	27	81	4	113	44	13	7	35	1.71
19715778--19715947	27	6.2	27	78	5	128	38	15	11	34	1.83
19715710--19715848	68	2.1	67	87	1	197	40	17	8	33	1.81
19715403--19716054	275	2.4	275	91	0	1047	39	14	9	35	1.79
19715909--19715990	43	1.9	43	87	0	119	41	12	10	35	1.78
19715952--19716072	27	4.4	27	80	6	127	39	14	10	35	1.80
19715828--19716094	125	2.1	125	95	0	480	39	12	10	37	1.77
19715845--19716045	98	2.1	98	84	6	257	39	13	10	36	1.79
19720024--19720112	45	2.0	45	86	4	126	28	13	22	35	1.92
19720131--19720240	45	2.4	45	83	0	130	27	17	17	38	1.92
19720219--19720311	24	4.0	24	68	13	77	37	16	6	39	1.74
19720231--19720344	45	2.5	45	88	0	156	36	18	8	35	1.82
19720324--19720373	24	2.1	24	84	0	64	26	16	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19720279--19720412	69	1.9	69	84	0	178	31	19	12	36	1.89
19720029--19720424	114	3.5	115	80	4	399	30	17	14	36	1.91
19723423--19723477	21	2.6	21	76	2	65	21	9	23	45	1.80
19723513--19723688	23	7.5	23	78	11	171	34	27	12	25	1.92
19723532--19723833	26	12.7	26	78	10	201	36	27	11	24	1.90
19723630--19723894	116	2.3	116	85	0	341	38	25	10	24	1.88
19723704--19723759	21	2.7	21	94	0	94	35	33	16	14	1.88
19726271--19726300	16	1.9	16	93	6	53	30	0	6	63	1.20
19728848--19729093	125	2.0	124	90	2	381	31	22	21	24	1.98
19735387--19735440	21	2.6	21	84	0	72	18	16	27	37	1.93
19735502--19735583	23	3.6	23	88	0	119	26	9	24	39	1.86
19735477--19735584	46	2.4	46	84	9	141	25	9	26	37	1.86
19735591--19735671	22	3.7	22	80	3	74	43	19	9	27	1.83
19735617--19735662	21	2.2	21	88	0	65	45	21	10	21	1.82
19735689--19735730	22	1.9	22	90	0	66	42	26	4	26	1.75
19735689--19735737	22	2.2	22	85	3	62	44	24	4	26	1.71
19747704--19747742	21	1.9	20	84	5	51	64	0	33	2	1.08
19756071--19756187	42	2.8	42	94	0	198	21	35	22	20	1.96
19762347--19762445	38	2.5	40	80	3	112	25	17	36	21	1.94
19762900--19762950	19	2.7	19	90	0	84	29	29	21	19	1.98
19764550--19764582	16	2.1	16	94	0	57	39	9	21	30	1.84
19770084--19770196	50	2.3	51	82	3	131	29	21	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19783446--19783486	3	13.7	3	94	0	73	36	29	0	34	1.58
19798631--19798733	54	1.9	54	93	0	179	21	39	15	23	1.91
19798701--19798806	40	2.7	40	95	0	185	20	36	19	22	1.95
19804880--19804963	42	2.0	42	88	4	125	28	20	30	20	1.97
19804885--19804991	42	2.5	42	83	4	117	28	18	31	21	1.97
19820941--19820997	25	2.3	25	96	0	105	28	3	40	28	1.73
19832542--19832585	21	2.0	22	86	4	63	63	6	0	29	1.20
19836495--19836580	26	3.2	26	64	20	68	26	38	16	18	1.92
19836520--19836605	27	3.1	27	62	25	63	23	40	16	19	1.91
19836472--19836717	55	4.6	55	89	5	337	28	36	14	20	1.92
19842239--19842285	19	2.4	20	82	7	60	19	19	27	34	1.96
19842706--19842824	37	3.2	36	85	4	157	25	36	10	26	1.89
19842859--19842883	2	12.5	2	100	0	50	52	0	0	48	1.00
19848906--19849059	55	2.8	54	92	2	236	28	35	13	22	1.92
19850924--19850968	16	2.8	15	80	12	54	64	0	35	0	0.94
19850910--19850986	20	4.1	20	76	18	85	66	0	33	0	0.92
19850914--19850982	36	1.9	36	88	5	104	65	0	34	0	0.93
19850940--19850989	15	3.2	16	73	18	52	68	0	32	0	0.90
19862470--19862506	19	1.9	19	88	0	56	40	29	0	29	1.57
19869938--19869981	22	2.0	22	90	0	70	29	6	20	43	1.78
19889236--19889405	36	4.6	36	80	7	164	20	10	40	28	1.86
19893340--19893414	39	1.9	39	94	5	134	25	12	34	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19896553--19896657	38	2.8	38	92	2	167	21	15	38	24	1.92
19901750--19901803	28	2.0	28	85	3	74	29	20	20	29	1.98
19912839--19912883	22	2.0	22	100	0	90	31	8	46	13	1.74
19912922--19912959	16	2.4	17	82	13	53	78	0	18	2	0.86
19912947--19913008	31	2.0	32	83	3	81	48	14	20	16	1.81
19917309--19917408	42	2.4	42	94	0	173	24	22	33	21	1.98
19921838--19921914	38	2.0	38	94	0	136	20	11	36	31	1.89
19923902--19923944	22	1.9	23	85	4	61	69	0	30	0	0.88
19923932--19924051	37	3.3	37	87	3	163	35	4	40	19	1.71
19925337--19925410	37	2.0	38	83	2	96	24	16	32	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93