genome.fa.s1.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr1
Parameters: 2 7 7 80 10 50 1000
Length:  37323695

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  68  of  93  ( 11113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26114391--26114421	16	1.9	16	100	0	62	25	3	51	19	1.62
26121336--26121376	21	1.9	22	90	5	66	51	7	24	17	1.70
26121336--26121380	20	2.2	21	84	11	58	55	6	22	15	1.63
26121333--26121381	21	2.3	20	80	10	62	55	6	22	16	1.63
26121010--26121789	389	2.0	387	98	0	1508	38	15	18	27	1.91
26121725--26121765	21	1.9	22	90	5	66	51	7	24	17	1.70
26121725--26121769	20	2.2	21	84	11	58	55	6	22	15	1.63
26121722--26121770	21	2.3	20	80	10	62	55	6	22	16	1.63
26127224--26127286	31	2.0	31	90	0	99	23	6	19	50	1.70
26128970--26129005	2	18.0	2	100	0	72	50	0	0	50	1.00
26134810--26134868	30	2.0	30	89	0	91	32	13	16	37	1.88
26135658--26135791	47	2.9	47	86	0	196	35	8	14	41	1.78
26145560--26145600	21	2.0	21	95	0	73	24	29	17	29	1.97
26145811--26145950	2	66.0	2	86	5	138	44	9	0	45	1.41
26145991--26146115	42	3.0	42	83	0	160	22	31	22	24	1.99
26151941--26151985	23	2.0	22	86	4	63	26	8	15	48	1.74
26153381--26153408	11	2.5	11	100	0	56	32	10	32	25	1.90
26153993--26154054	30	2.1	30	87	0	88	30	14	12	41	1.83
26159270--26159307	20	1.9	20	100	0	76	28	5	21	44	1.73
26159663--26159726	32	2.1	32	82	5	78	50	4	18	26	1.67
26163439--26163473	5	7.0	5	96	0	61	37	0	22	40	1.55
26177536--26177649	35	3.3	35	86	0	165	35	29	10	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26179024--26179048	2	12.5	2	100	0	50	0	0	48	52	1.00
26179052--26179187	44	3.1	43	84	6	157	48	26	1	23	1.59
26179157--26179183	2	13.5	2	100	0	54	51	48	0	0	1.00
26179183--26179253	4	17.8	4	85	0	61	42	1	8	47	1.42
26179183--26179253	10	7.1	10	72	0	61	42	1	8	47	1.42
26179340--26179405	2	33.5	2	75	3	62	46	3	4	45	1.38
26187740--26187764	13	1.9	13	100	0	50	48	0	0	52	1.00
26188855--26188894	19	2.0	20	95	4	73	42	27	0	30	1.56
26190577--26190663	34	2.6	34	83	7	115	33	31	10	25	1.89
26193289--26193343	22	2.5	22	96	0	101	36	12	3	47	1.59
26193283--26193361	22	3.5	22	84	5	88	41	10	3	44	1.56
26195395--26195440	19	2.4	20	82	10	60	54	0	2	43	1.12
26205246--26205285	15	2.7	15	88	0	53	32	5	17	45	1.70
26205329--26205368	5	8.0	5	85	0	53	40	0	25	35	1.56
26208380--26208432	28	1.9	27	84	3	70	24	24	20	30	1.99
26208613--26208650	19	2.0	19	94	0	67	42	28	0	28	1.56
26209006--26209068	31	2.0	31	93	0	108	38	12	3	46	1.58
26217536--26217575	21	2.0	21	90	9	66	57	27	5	10	1.52
26243232--26243340	54	2.0	54	80	7	123	8	12	16	62	1.53
26244663--26244763	34	2.9	35	89	2	150	31	9	22	35	1.87
26252229--26252270	21	2.0	21	86	9	59	50	7	26	16	1.71
26253683--26253763	35	2.3	35	77	10	94	34	8	23	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26255291--26255341	20	2.5	20	79	17	61	64	5	3	25	1.33
26261085--26261150	29	2.2	30	91	2	107	34	16	3	43	1.63
26263008--26263051	22	2.0	22	95	0	79	43	22	2	31	1.66
26276411--26276582	88	2.0	88	92	2	292	25	20	15	38	1.92
26277292--26277345	22	2.5	21	84	3	63	0	9	7	83	0.82
26280823--26280882	30	2.1	29	81	6	68	30	6	23	40	1.80
26290047--26290084	19	2.0	19	94	0	67	42	28	0	28	1.56
26295486--26295526	19	2.2	19	86	0	55	56	0	0	43	0.99
26296262--26296499	92	2.6	92	83	4	284	22	11	28	37	1.89
26296411--26296454	23	2.0	22	81	4	52	9	13	29	47	1.74
26297835--26298001	63	2.7	63	86	8	227	23	16	34	25	1.96
26315398--26315607	36	5.7	35	75	11	129	21	12	40	25	1.89
26315396--26315574	76	2.4	74	86	5	245	21	13	40	24	1.89
26315689--26315753	2	34.0	2	87	9	100	46	1	0	52	1.10
26315835--26315895	2	31.0	2	80	9	72	44	3	1	50	1.28
26315617--26315895	146	1.9	141	95	2	495	30	6	18	43	1.76
26325377--26325467	46	2.0	47	84	2	121	23	20	18	37	1.94
26326029--26326063	2	17.5	2	100	0	70	0	51	0	48	1.00
26335124--26335164	3	14.0	3	89	5	66	29	0	2	68	1.03
26336282--26336354	38	1.9	38	86	5	103	47	10	6	34	1.65
26337750--26337788	19	2.0	20	85	5	53	41	5	0	53	1.23
26338753--26338811	24	2.5	23	73	10	57	52	0	5	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26346459--26346568	50	2.2	50	96	1	202	34	3	24	37	1.73
26365571--26365624	24	2.3	23	81	9	56	64	1	3	29	1.21
26365690--26365745	24	2.5	22	80	13	60	69	1	1	26	1.08
26365987--26366037	24	2.1	24	81	0	57	74	1	1	21	1.02
26366998--26367043	23	2.0	23	91	0	74	28	6	8	56	1.54
26367118--26367151	16	2.2	16	94	5	61	20	0	11	67	1.21
26369767--26369812	2	23.0	2	100	0	92	50	0	0	50	1.00
26369926--26369950	2	12.5	2	100	0	50	48	0	0	52	1.00
26376715--26376752	19	2.0	19	100	0	76	42	31	0	26	1.56
26377095--26377146	20	2.5	20	81	3	59	32	13	17	36	1.89
26378386--26378418	2	16.5	2	93	0	57	3	0	45	51	1.16
26383981--26384095	48	2.4	48	92	0	194	40	14	26	18	1.89
26390385--26390414	6	5.0	6	100	0	60	16	33	33	16	1.92
26396478--26396521	22	2.0	22	100	0	88	22	4	36	36	1.75
26412339--26412389	12	4.2	12	82	0	66	50	1	37	9	1.47
26412884--26412920	19	2.1	19	85	10	51	10	8	54	27	1.63
26437167--26437259	33	2.8	33	86	0	132	45	23	8	22	1.80
26438194--26438262	14	4.8	14	77	12	77	78	1	17	2	0.95
26438194--26438262	29	2.4	28	82	17	88	78	1	17	2	0.95
26438210--26438270	25	2.4	25	89	8	88	80	0	16	3	0.84
26438955--26439008	7	7.6	7	87	4	81	81	0	14	3	0.82
26438956--26439008	22	2.5	22	90	3	65	81	0	15	3	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26440447--26440482	12	2.9	12	91	4	54	47	22	5	25	1.73
26443303--26443332	15	2.0	15	93	0	51	50	0	0	50	1.00
26449334--26449373	17	2.4	17	95	4	73	52	7	0	40	1.30
26449902--26449964	30	2.2	30	82	5	76	30	7	20	41	1.81
26451088--26451112	13	1.9	13	100	0	50	44	0	8	48	1.32
26454795--26454861	4	16.8	4	90	0	107	26	0	22	50	1.49
26462208--26462239	2	16.0	2	93	0	55	46	0	53	0	1.00
26462267--26462298	2	16.0	2	93	0	55	46	0	53	0	1.00
26463699--26463752	17	3.1	17	78	21	51	53	1	0	44	1.11
26463834--26463903	30	2.3	30	82	4	79	38	8	2	50	1.48
26463958--26464051	34	2.8	33	80	6	109	46	9	7	36	1.65
26463971--26464030	20	3.3	20	65	26	51	46	8	6	38	1.60
26466976--26467082	55	1.9	55	88	7	164	46	22	9	21	1.79
26467515--26467542	2	14.0	2	100	0	56	50	0	50	0	1.00
26472242--26472271	3	10.0	3	100	0	60	66	0	0	33	0.92
26475768--26475792	2	12.5	2	100	0	50	52	0	0	48	1.00
26483124--26483200	37	2.1	38	92	2	129	49	11	14	24	1.76
26484903--26484961	30	2.0	30	89	0	91	37	16	13	32	1.88
26490289--26490396	48	2.3	47	83	1	126	42	20	10	26	1.84
26492052--26492097	2	23.5	2	91	4	76	50	0	50	0	1.00
26496420--26496458	21	1.9	20	84	5	51	35	15	7	41	1.76
26499958--26500060	38	2.6	39	87	6	147	22	41	16	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26499958--26500056	19	5.1	19	66	9	74	21	41	17	20	1.90
26503871--26503908	20	1.9	20	100	0	76	28	5	21	44	1.73
26512103--26512141	19	2.1	19	100	0	78	64	15	15	5	1.46
26526655--26526720	2	33.0	2	96	0	123	48	0	0	50	1.01
26531941--26531975	15	2.3	15	100	0	70	57	11	5	25	1.56
26537342--26537399	29	2.1	27	87	9	82	39	8	3	48	1.51
26539527--26539580	21	2.5	22	75	19	60	61	14	1	22	1.43
26539567--26539625	20	2.9	20	76	2	55	62	13	0	23	1.31
26540525--26540549	2	12.5	2	100	0	50	48	0	0	52	1.00
26563685--26563720	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93