Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  51074515

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   

This is table  168  of  168  ( 20060 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51032936--51032960
13
1.9
13
100
0
50
0
12
56
32
1.36
51036643--51036684
21
2.0
21
100
0
84
28
28
14
28
1.95
51037691--51037722
16
2.0
16
100
0
64
12
18
12
56
1.67
51038528--51038577
24
2.1
24
100
0
100
42
12
14
32
1.82
51039802--51039861
29
2.1
28
84
3
75
18
11
25
45
1.83
51046856--51046883
11
2.5
11
100
0
56
71
0
0
28
0.86
51047393--51047476
39
2.2
39
88
0
123
23
36
19
20
1.95
51049363--51049396
2
17.0
2
93
0
59
47
50
2
0
1.16
51058464--51058988
230
2.3
229
87
3
734
23
15
14
47
1.81
51062370--51062409
21
2.0
20
90
5
62
12
17
20
50
1.78
51062327--51062518
95
2.0
95
100
0
384
14
27
20
37
1.92
51062465--51062504
21
2.0
20
90
5
62
12
17
20
50
1.78
51062545--51062616
32
2.3
32
95
2
128
16
25
29
29
1.97
51064603--51064636
14
2.4
14
90
0
50
47
2
0
50
1.16
51071056--51071110
23
2.4
23
90
0
92
41
3
14
40
1.63
51072669--51072702
17
2.0
17
94
0
59
50
0
2
47
1.16
51073932--51074008
31
2.5
31
82
0
100
31
24
15
28
1.96
51074456--51074515
8
7.9
8
88
7
81
11
8
38
41
1.72
51074229--51074512
7
39.6
7
73
13
143
8
3
48
39
1.51
51074449--51074515
23
3.0
23
88
2
100
10
7
38
43
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168

The End!