genome.fa.s13.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  58321163

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  124  of  199  ( 23770 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37600030--37600131	49	2.1	50	85	9	138	47	13	10	28	1.77
37601331--37601355	12	2.1	12	100	0	50	16	0	16	68	1.22
37603557--37603600	3	14.7	3	95	0	79	65	2	0	31	1.05
37614270--37614771	23	21.6	24	71	6	210	40	19	13	26	1.88
37614281--37614806	93	5.6	93	94	0	881	39	18	13	27	1.89
37615533--37615685	28	5.5	28	88	0	216	32	26	9	31	1.89
37620529--37620927	46	9.6	45	81	13	395	35	14	21	28	1.93
37620565--37620792	36	6.0	36	86	9	303	37	13	20	28	1.90
37620529--37620927	82	4.9	81	82	13	478	35	14	21	28	1.93
37620712--37620777	21	3.5	20	63	25	52	34	12	19	33	1.89
37627284--37627355	22	3.3	22	94	0	117	25	27	16	30	1.97
37631055--37631380	165	2.0	160	84	7	426	38	13	13	34	1.83
37632810--37632842	7	4.7	7	100	0	66	42	15	42	0	1.46
37633582--37633772	98	2.0	96	89	6	296	48	16	7	28	1.72
37638529--37638584	25	2.2	25	87	0	76	42	16	21	19	1.89
37638541--37638588	25	1.9	25	100	0	96	37	18	22	20	1.94
37639490--37639833	50	6.9	50	86	1	431	21	29	21	26	1.99
37646967--37647023	22	2.7	21	89	5	87	31	0	38	29	1.58
37647340--37647403	5	13.0	5	78	15	71	75	0	0	25	0.81
37656486--37656586	38	2.7	38	87	6	134	15	14	30	38	1.88
37656566--37656617	22	2.3	23	80	9	63	23	15	21	40	1.91
37662274--37662401	50	2.6	50	83	2	141	39	14	14	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37667673--37667956	50	5.6	50	83	6	313	27	19	28	24	1.98
37670950--37671268	175	1.8	175	91	0	530	32	8	27	31	1.87
37671238--37671601	194	1.9	194	83	4	475	28	14	20	35	1.92
37673369--37673427	20	3.1	19	87	4	84	69	0	1	28	0.98
37673452--37673494	10	4.7	9	82	11	52	76	2	2	18	1.00
37673630--37673758	57	2.2	57	81	14	142	30	4	2	62	1.28
37673662--37673761	29	3.5	28	80	14	107	32	5	1	62	1.24
37673662--37673766	28	3.7	28	77	15	108	31	4	0	62	1.22
37673688--37673813	9	13.2	10	71	17	81	31	2	1	64	1.16
37673679--37673807	10	13.4	10	70	12	74	33	2	1	62	1.17
37676535--37676573	21	1.9	20	89	5	60	46	2	10	41	1.51
37677813--37677846	16	2.1	16	88	0	50	44	38	5	11	1.65
37679269--37679326	22	2.6	22	91	0	89	34	15	25	24	1.95
37683863--37683967	52	2.0	51	83	5	131	26	31	0	40	1.62
37683892--37684019	54	2.4	54	87	10	174	25	30	1	42	1.65
37683982--37684046	27	2.4	27	82	12	80	30	30	3	35	1.73
37684399--37684436	19	2.0	19	94	0	67	26	7	31	34	1.85
37685330--37685366	9	4.1	9	92	0	65	45	13	10	29	1.77
37697445--37697521	31	2.6	30	77	10	77	37	15	16	29	1.90
37698286--37698347	26	2.4	26	88	0	97	54	3	19	22	1.58
37698611--37698735	30	4.2	30	82	0	142	36	12	25	26	1.91
37727847--37727931	9	9.4	9	82	5	109	42	22	9	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37729267--37729338	29	2.5	29	83	0	90	23	36	19	20	1.95
37729267--37729360	29	3.2	28	80	5	89	24	34	20	21	1.97
37731896--37731928	16	2.1	16	94	0	57	27	0	0	72	0.85
37732347--37732380	16	2.1	16	88	0	50	64	8	0	26	1.22
37737131--37737155	2	12.5	2	100	0	50	52	0	48	0	1.00
37737973--37738031	24	2.4	25	80	8	68	33	3	5	57	1.37
37748003--37748052	13	3.8	13	74	10	57	64	0	0	36	0.94
37755521--37755554	15	2.2	16	94	5	61	44	0	11	44	1.40
37757046--37757086	18	2.3	18	95	0	73	17	21	12	48	1.79
37757246--37757437	44	4.5	44	70	15	139	28	20	21	29	1.98
37757204--37757491	128	2.2	128	91	1	452	27	21	21	30	1.98
37757297--37757476	44	4.2	44	70	14	133	27	20	22	30	1.98
37757493--37758095	88	6.9	88	93	0	1010	28	26	18	26	1.98
37757561--37757878	44	7.2	44	62	8	153	29	25	20	25	1.99
37762824--37762895	25	3.0	24	80	9	67	55	2	19	22	1.56
37762836--37762885	25	2.0	25	88	4	73	60	4	16	20	1.52
37762928--37762957	15	2.0	15	100	0	60	40	6	6	46	1.56
37764126--37764767	325	2.0	326	98	0	1232	24	26	14	34	1.94
37770388--37770421	15	2.2	16	94	5	61	44	0	11	44	1.40
37781976--37782020	16	2.8	17	75	18	51	0	37	0	62	0.96
37782457--37782578	61	2.0	61	85	3	167	32	15	22	29	1.95
37787784--37787819	18	2.0	18	100	0	72	44	5	11	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37787786--37787825	18	2.3	18	91	4	64	47	5	10	37	1.59
37787948--37787986	20	1.9	20	84	5	51	76	5	2	15	1.06
37795863--37796225	186	1.9	187	91	1	595	33	19	15	30	1.94
37802733--37802778	17	2.8	17	86	3	67	45	13	19	21	1.84
37805863--37806654	394	2.0	394	92	0	1323	31	22	14	31	1.94
37815647--37815734	37	2.4	38	88	3	135	9	11	36	43	1.72
37825833--37825892	26	2.3	26	85	2	77	35	18	25	21	1.96
37834224--37834786	31	18.4	31	71	13	272	43	18	7	31	1.77
37834237--37834788	61	9.0	60	75	10	397	43	18	7	30	1.77
37834256--37834797	92	5.9	92	87	1	694	43	18	6	30	1.76
37834816--37834878	30	2.1	30	90	0	99	46	14	6	33	1.70
37837578--37837708	25	4.6	25	74	24	118	42	0	2	54	1.18
37837578--37837708	58	2.3	56	86	6	174	42	0	2	54	1.18
37844117--37844145	15	1.9	15	100	0	58	31	20	20	27	1.98
37851558--37851736	66	2.7	65	81	5	182	27	25	16	30	1.96
37851672--37851737	30	2.2	30	83	0	87	28	22	18	30	1.97
37855669--37855737	31	2.2	31	86	0	93	20	18	14	46	1.84
37856120--37856163	22	2.0	23	90	4	72	65	0	2	31	1.05
37856115--37856181	31	2.3	29	85	14	93	65	0	2	31	1.07
37856142--37856189	18	2.7	18	81	12	62	70	0	2	27	0.98
37856411--37856437	12	2.2	12	100	0	54	44	0	22	33	1.53
37856719--37856813	49	1.9	49	86	0	136	25	13	30	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37870746--37870790	9	5.1	9	79	15	58	44	0	28	26	1.55
37871584--37871643	31	1.9	31	89	0	93	51	15	13	20	1.75
37872554--37872612	30	2.0	30	87	12	86	35	0	47	16	1.47
37872799--37872887	44	2.0	44	100	0	178	31	28	6	33	1.83
37875895--37875949	26	2.1	27	82	3	67	25	1	5	67	1.22
37875895--37875946	27	1.9	27	84	0	68	25	1	5	67	1.23
37885345--37885396	24	2.1	25	85	3	70	53	5	0	40	1.25
37893005--37893029	11	2.3	11	100	0	50	32	0	28	40	1.57
37899028--37899066	20	2.0	20	94	0	69	56	0	12	30	1.37
37906047--37906187	68	2.1	67	79	14	155	47	9	5	36	1.61
37906107--37906134	9	3.1	9	100	0	56	57	10	0	32	1.33
37906077--37906218	68	2.1	66	93	2	239	45	9	4	40	1.57
37906207--37906248	16	2.6	16	92	0	66	42	7	2	47	1.43
37906222--37906282	22	2.8	22	84	0	77	47	1	1	49	1.21
37907946--37908017	20	3.6	20	76	10	67	26	2	18	52	1.58
37916686--37916746	32	1.9	32	83	12	81	49	1	4	44	1.33
37916705--37916746	20	2.1	20	86	0	57	47	0	7	45	1.30
37921725--37921769	14	3.1	14	75	12	54	17	6	8	66	1.40
37922651--37922883	114	2.1	113	95	1	414	33	9	29	27	1.88
37927993--37928034	18	2.3	18	84	8	50	26	45	7	21	1.77
37928856--37929006	74	2.0	74	97	0	284	23	19	15	41	1.89
37929042--37929152	35	3.0	34	75	20	107	48	21	5	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37929352--37929386	16	2.2	16	90	10	54	57	5	31	5	1.46
37929441--37929544	51	2.1	50	85	10	142	49	5	30	14	1.67
37942364--37942400	3	12.3	3	88	0	56	32	2	2	62	1.23
37944724--37944821	49	2.0	49	93	0	169	42	14	15	27	1.85
37947741--37947774	12	2.8	12	86	0	50	70	0	14	14	1.17
37947918--37947970	25	2.1	25	86	6	72	37	11	18	32	1.87
37953902--37953930	15	1.9	15	100	0	58	24	0	6	68	1.13
37966243--37966315	36	2.0	36	97	0	137	34	19	6	39	1.78
37973937--37973971	18	1.9	18	94	0	61	45	11	14	28	1.79
37984120--37984356	50	4.6	51	80	7	214	24	27	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199