genome.fa.s8.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  10  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5488523--5488596	16	4.4	17	71	23	50	67	0	1	31	0.99
5488601--5488687	41	2.2	40	87	4	122	65	1	3	29	1.16
5491447--5491510	32	2.1	30	82	11	76	54	6	25	14	1.62
5515707--5515733	2	13.5	2	100	0	54	0	48	0	51	1.00
5534941--5534972	14	2.4	13	94	5	55	59	0	0	40	0.97
5546921--5546946	9	2.9	9	100	0	52	23	0	7	69	1.14
5557090--5557119	7	4.3	7	95	0	51	60	0	36	3	1.14
5566560--5566641	12	6.8	12	81	0	101	15	35	26	21	1.94
5588363--5588403	2	20.5	2	100	0	82	51	0	0	48	1.00
5588810--5588895	31	2.8	32	78	7	88	1	38	0	60	1.04
5589972--5590052	5	16.8	5	70	19	57	0	39	1	59	1.05
5589968--5590045	40	2.0	40	82	5	95	0	38	1	60	1.05
5589962--5590046	19	4.4	19	78	10	82	1	37	1	60	1.12
5590009--5590102	24	4.1	24	69	15	65	3	37	0	59	1.13
5591868--5591910	21	2.0	21	90	0	68	0	39	6	53	1.28
5601015--5601082	31	2.2	31	82	10	77	44	1	5	48	1.36
5601015--5601082	29	2.4	28	81	13	70	44	1	5	48	1.36
5601030--5601076	21	2.3	21	88	3	69	42	0	8	48	1.33
5601126--5601184	2	29.5	2	96	0	109	0	47	0	52	1.00
5607726--5607788	8	7.5	8	76	13	56	44	0	0	55	0.99
5607712--5607788	28	2.9	27	83	12	99	44	1	0	54	1.08
5607734--5607794	23	2.8	21	81	18	72	42	0	1	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5607708--5607793	11	8.2	11	73	12	58	43	1	1	54	1.15
5607887--5607935	22	2.2	23	85	10	66	46	0	2	51	1.12
5607750--5608011	133	1.9	137	85	6	365	32	7	3	56	1.45
5613517--5613645	70	1.9	66	87	6	186	36	18	20	24	1.95
5614971--5615044	33	2.2	33	88	4	105	41	10	5	41	1.63
5615107--5615151	18	2.4	19	77	3	56	57	0	2	40	1.11
5617191--5617237	2	23.5	2	100	0	94	48	0	0	51	1.00
5624564--5624619	29	1.9	29	89	7	87	33	3	0	62	1.12
5624656--5624746	44	2.1	44	91	0	146	42	8	15	32	1.78
5629295--5629340	24	1.9	24	82	8	58	65	8	6	19	1.43
5646325--5646488	75	2.2	76	87	3	233	21	18	10	48	1.78
5665504--5665565	23	2.7	23	77	7	63	53	1	1	43	1.20
5666033--5666092	20	3.0	20	85	7	79	55	0	5	40	1.22
5668807--5668835	13	2.1	14	93	6	51	24	6	6	62	1.45
5669296--5669344	16	3.0	16	76	11	55	53	0	0	46	1.00
5708018--5708093	38	2.0	38	94	0	134	39	7	10	42	1.69
5708015--5708081	20	3.5	20	64	15	50	40	5	8	44	1.60
5709197--5709242	23	2.0	23	83	8	58	54	0	0	45	0.99
5709622--5709663	19	2.1	21	86	8	61	14	16	0	69	1.20
5714243--5714369	68	1.9	68	98	0	245	35	16	18	29	1.93
5747030--5747073	18	2.4	18	84	0	61	4	38	13	43	1.65
5749867--5749896	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5755488--5755513	4	6.5	4	100	0	52	26	23	23	26	2.00
5756705--5756738	6	5.7	6	96	0	59	0	61	0	38	0.96
5758411--5758440	10	3.0	10	95	0	51	0	56	0	43	0.99
5766917--5766968	21	2.5	21	78	15	63	53	11	0	34	1.37
5775739--5775865	63	2.0	64	92	1	211	29	15	9	45	1.78
5779012--5779058	18	2.7	18	96	3	87	44	8	31	14	1.76
5785464--5785501	2	19.0	2	94	0	67	47	0	2	50	1.15
5786205--5786229	7	3.6	7	100	0	50	0	44	0	56	0.99
5786665--5786699	7	5.0	7	92	0	61	2	54	0	42	1.15
5795662--5795966	52	5.9	50	76	10	208	50	9	6	33	1.61
5795812--5795857	24	1.9	24	86	0	65	39	13	8	39	1.75
5795671--5795967	25	11.5	25	77	8	224	50	9	6	33	1.59
5797823--5797852	15	2.0	15	93	0	51	23	6	6	63	1.43
5804556--5804635	35	2.5	34	82	11	98	55	6	0	38	1.25
5804568--5804628	22	2.8	22	72	18	63	55	8	0	36	1.30
5815244--5815316	37	2.0	37	94	0	128	23	12	16	47	1.80
5816095--5816134	2	20.0	2	100	0	80	50	0	0	50	1.00
5827125--5827208	28	3.0	28	96	0	150	42	17	14	25	1.87
5832698--5832745	23	2.0	23	84	12	60	47	4	0	47	1.21
5838317--5838399	28	3.0	28	100	0	166	38	28	14	18	1.90
5840484--5840516	11	2.8	12	90	9	59	0	21	0	78	0.75
5844260--5844299	16	2.6	16	80	4	55	45	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5855712--5855771	25	2.4	25	97	0	111	51	33	3	11	1.55
5856220--5856247	14	2.0	14	100	0	56	35	14	7	42	1.73
5865988--5866013	2	13.0	2	100	0	52	0	50	0	50	1.00
5878422--5878474	26	2.0	27	88	3	81	33	3	58	3	1.34
5883275--5883306	9	3.6	9	100	0	64	0	12	0	87	0.54
5889308--5889335	13	2.2	13	100	0	56	21	7	32	39	1.80
5895196--5895220	2	12.5	2	100	0	50	52	0	48	0	1.00
5902945--5902969	11	2.3	11	100	0	50	24	8	8	60	1.52
5909373--5909433	33	1.9	30	87	9	86	36	3	8	52	1.48
5909666--5909717	17	3.1	17	77	5	61	46	0	0	53	1.00
5914118--5914161	2	22.0	2	100	0	88	50	0	0	50	1.00
5914298--5914353	2	28.0	2	100	0	112	50	0	0	50	1.00
5916978--5917051	32	2.2	32	76	9	78	18	9	0	71	1.12
5917391--5917425	18	1.9	18	94	0	61	25	8	0	65	1.21
5917107--5917611	252	2.0	253	99	0	987	34	16	11	37	1.86
5918401--5918449	4	12.8	4	75	16	50	24	0	0	75	0.80
5918405--5918457	23	2.3	24	81	15	67	24	0	0	75	0.80
5918401--5918460	15	3.9	15	83	14	70	23	0	0	76	0.78
5918407--5918461	16	3.6	15	80	11	67	23	0	0	76	0.79
5918683--5919151	62	7.6	62	84	1	620	37	18	10	33	1.85
5918667--5919151	124	3.9	124	91	1	760	37	18	10	33	1.85
5923649--5923722	32	2.2	32	76	9	78	18	9	0	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5923934--5923969	2	18.0	2	100	0	72	50	0	0	50	1.00
5924936--5925007	17	4.5	15	78	13	72	22	0	0	77	0.76
5924957--5925005	14	3.3	14	86	13	71	24	0	0	75	0.80
5924939--5925007	19	3.9	19	81	11	85	23	0	0	76	0.78
5930792--5930906	26	4.9	24	78	17	109	46	0	0	53	1.00
5930791--5930889	25	4.0	24	82	11	121	47	0	0	52	1.00
5930769--5931028	47	5.4	47	70	17	146	43	0	0	55	1.08
5930766--5930897	16	8.8	16	69	17	70	45	0	0	54	0.99
5930855--5930914	31	1.9	32	83	6	79	40	0	0	60	0.97
5930825--5930930	15	7.1	15	70	21	64	37	0	0	62	0.96
5930943--5930973	16	1.9	16	93	0	53	48	0	3	48	1.17
5930977--5931022	15	3.0	15	87	3	56	47	2	2	47	1.26
5932226--5932310	16	5.8	16	69	21	60	47	0	1	51	1.08
5932465--5932494	12	2.4	13	94	5	53	10	0	3	86	0.67
5948923--5949418	254	2.0	253	91	1	805	33	17	17	31	1.93
5953489--5953523	18	1.9	18	88	11	54	42	0	0	57	0.99
5953567--5953617	25	2.0	25	88	0	75	52	0	0	47	1.00
5956705--5956745	17	2.4	18	84	12	59	31	0	2	65	1.05
5957592--5957645	28	1.9	28	84	0	72	50	5	16	27	1.68
5957877--5957943	35	1.9	35	93	0	116	31	11	8	47	1.71
5959649--5960158	255	2.0	254	98	1	993	39	12	16	31	1.86
5963490--5963558	30	2.4	28	85	11	95	50	4	10	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5978219--5978315	8	10.8	9	70	24	53	21	0	1	77	0.83
5978222--5978321	7	13.7	7	69	20	55	22	0	1	77	0.84
5978222--5978321	14	7.4	14	74	24	90	22	0	1	77	0.84
5978220--5978315	24	4.3	23	74	16	94	20	0	1	78	0.82
5978234--5978321	29	3.0	29	88	6	126	22	0	0	77	0.77
5978219--5978315	10	10.1	9	76	18	72	21	0	1	77	0.83
5982010--5982056	25	2.0	25	83	8	62	34	27	10	27	1.90
5983619--5983752	67	2.0	67	95	0	241	38	18	17	25	1.93
5987739--5987764	8	3.2	8	100	0	52	61	0	0	38	0.96
5991323--5991366	18	2.4	18	81	11	54	38	4	9	47	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50