genome.fa.s8.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  13  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6966866--6966924	3	20.0	3	78	16	61	27	1	0	71	0.96
6966880--6966927	10	5.1	10	82	14	66	27	2	0	70	0.98
6966870--6966927	18	3.2	18	80	11	73	25	1	0	72	0.94
6966866--6966949	24	3.5	24	78	18	77	27	1	2	69	1.09
6966870--6966934	17	4.0	15	76	20	60	24	1	1	72	1.02
6968523--6968604	40	2.0	40	92	0	137	45	9	4	40	1.59
6969320--6969349	15	2.0	15	100	0	60	53	0	0	46	1.00
6971166--6971199	5	6.6	5	86	6	50	14	0	2	82	0.79
6979337--6979375	18	2.2	18	90	0	60	43	17	7	30	1.77
7004271--7004309	21	1.9	21	89	5	62	58	15	7	17	1.59
7008472--7008514	18	2.4	18	84	0	50	44	0	11	44	1.40
7009224--7009279	19	3.0	19	75	12	62	28	0	0	71	0.86
7009238--7009289	26	2.0	26	85	7	70	30	0	0	69	0.89
7009438--7009497	22	2.6	24	80	19	74	53	0	0	46	1.00
7014800--7014840	2	20.5	2	100	0	82	48	0	0	51	1.00
7015112--7015177	35	1.9	34	84	9	89	22	4	0	72	1.02
7015136--7015176	16	2.7	15	85	14	50	26	2	0	70	0.99
7016406--7016465	31	1.9	32	93	3	104	48	11	15	25	1.78
7018267--7018517	124	2.0	124	97	2	486	30	21	14	33	1.93
7018502--7018535	2	17.0	2	93	0	59	0	47	0	52	1.00
7021681--7021714	14	2.4	14	90	5	50	79	0	0	20	0.73
7021701--7021745	20	2.2	20	84	7	56	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7023182--7023408	84	2.7	84	88	2	278	24	9	33	32	1.87
7023266--7023438	84	2.1	84	82	2	204	23	9	34	32	1.88
7042781--7042842	25	2.7	23	79	16	65	54	3	0	41	1.16
7051311--7051375	32	2.0	32	88	5	96	46	12	6	35	1.66
7056465--7056512	24	2.0	24	100	0	96	50	12	12	25	1.75
7059263--7059304	18	2.4	17	81	18	50	57	0	0	42	0.99
7059296--7059334	10	3.5	11	86	13	53	76	0	0	23	0.78
7059290--7059341	21	2.3	23	77	9	63	67	0	1	30	1.02
7059903--7059930	7	4.0	7	100	0	56	0	85	0	14	0.59
7068115--7068188	37	2.0	37	94	0	130	22	17	20	39	1.92
7072573--7072639	30	2.3	30	84	2	82	53	13	8	23	1.68
7074748--7074873	66	1.9	66	83	0	162	23	30	11	33	1.91
7076280--7076340	30	2.0	30	84	12	81	50	3	16	29	1.61
7092189--7092330	22	6.4	22	74	4	88	26	8	20	44	1.80
7092299--7092344	22	2.0	22	83	4	56	23	8	23	43	1.82
7094643--7094680	3	12.7	3	88	0	58	0	68	5	26	1.11
7108510--7108719	78	2.6	79	88	2	278	32	18	13	35	1.90
7109664--7109705	19	2.2	19	91	0	66	35	33	4	26	1.77
7109671--7109708	19	2.0	19	100	0	76	31	31	5	31	1.80
7117232--7117335	36	2.9	35	83	11	140	26	7	23	42	1.81
7119403--7119576	42	4.0	42	76	12	161	34	27	8	29	1.87
7119449--7119546	50	2.0	50	95	0	178	35	25	8	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7123760--7123898	43	3.2	43	81	8	183	28	18	12	39	1.88
7123749--7123948	86	2.3	85	85	4	276	27	21	14	37	1.91
7127307--7127378	9	7.7	9	74	9	63	77	2	1	18	0.96
7127329--7127373	15	2.9	16	87	6	58	73	2	0	24	0.95
7128463--7128519	5	11.0	5	79	20	64	75	0	0	24	0.80
7128464--7128519	22	2.5	22	83	13	71	75	0	0	25	0.81
7128757--7128818	23	2.8	22	81	13	65	75	1	4	17	1.05
7128713--7128818	36	2.8	38	75	12	94	71	1	6	19	1.17
7134136--7134163	2	14.0	2	100	0	56	50	0	0	50	1.00
7134354--7134431	29	2.6	29	83	4	84	25	7	17	48	1.74
7139493--7139682	79	2.4	79	80	1	220	38	5	8	46	1.59
7146420--7146592	31	5.6	31	91	2	276	23	16	20	40	1.91
7150310--7150357	15	3.4	14	77	11	53	35	2	4	58	1.29
7150897--7150956	31	1.9	31	90	6	95	20	18	38	23	1.93
7150929--7151263	86	3.9	86	84	5	439	21	19	31	27	1.97
7155138--7155257	31	3.9	31	86	0	159	35	21	16	25	1.94
7155308--7155732	55	7.8	54	76	8	337	45	29	11	13	1.78
7155327--7155737	110	3.8	110	80	3	456	45	29	11	13	1.78
7155308--7155737	165	2.6	163	81	4	479	45	29	11	13	1.78
7156168--7156228	23	2.7	23	86	0	86	27	29	18	24	1.98
7156217--7156700	104	4.7	104	74	4	386	22	34	13	29	1.93
7156408--7156458	23	2.2	23	82	6	59	21	29	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7156217--7156701	208	2.3	207	80	4	537	22	34	13	29	1.93
7156616--7156690	22	3.3	22	79	5	87	25	36	14	24	1.93
7156697--7156814	23	5.1	23	77	4	94	27	35	9	27	1.87
7156220--7156768	104	5.3	103	74	3	266	23	34	13	29	1.92
7156700--7156838	70	2.0	70	82	0	170	26	34	10	28	1.89
7156764--7157057	81	3.6	81	83	0	365	26	34	11	27	1.91
7157013--7157066	23	2.3	23	90	0	81	25	40	9	24	1.85
7158636--7158696	27	2.3	27	85	0	77	45	13	16	24	1.83
7162810--7162839	11	2.9	10	90	9	51	10	20	0	70	1.16
7164673--7164760	46	1.9	46	85	0	122	27	22	5	44	1.75
7165283--7165317	2	17.5	2	100	0	70	48	0	0	51	1.00
7165427--7165460	2	17.0	2	100	0	68	50	0	0	50	1.00
7165283--7165570	144	2.0	143	98	0	558	34	14	7	43	1.73
7165820--7165901	31	2.6	31	78	14	89	52	4	13	29	1.61
7175598--7176329	59	12.4	59	82	0	730	37	15	12	33	1.86
7177003--7177041	2	19.5	2	94	0	69	48	0	2	48	1.15
7177406--7177467	8	7.8	8	75	18	58	0	12	3	83	0.75
7183638--7183684	22	2.1	22	96	0	85	12	29	4	53	1.58
7183638--7183692	22	2.5	22	90	0	74	14	27	7	50	1.69
7186777--7186858	25	3.1	25	67	24	69	23	41	13	21	1.88
7186777--7186990	54	4.0	54	90	0	338	25	40	13	21	1.89
7200441--7200469	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7201741--7201925	93	2.0	92	98	0	352	32	10	25	30	1.89
7213920--7213993	39	1.9	38	84	13	98	25	21	20	32	1.97
7216932--7216985	21	2.5	21	87	6	72	74	0	0	25	0.83
7216932--7216977	15	3.0	15	87	9	58	76	0	0	23	0.79
7216933--7216980	9	5.8	9	82	9	50	77	0	0	22	0.78
7218957--7218987	4	7.5	4	92	7	53	22	0	0	77	0.77
7229528--7229829	67	4.8	63	84	6	314	31	14	20	34	1.92
7229661--7229829	59	2.8	59	86	4	187	29	15	21	33	1.95
7230546--7230587	22	2.0	21	86	13	61	66	23	0	9	1.21
7230933--7230972	17	2.4	17	100	0	80	0	15	52	32	1.43
7231496--7231540	13	3.3	13	82	11	54	75	0	2	22	0.91
7233272--7233309	15	2.5	15	86	0	58	42	2	28	26	1.69
7249398--7249436	19	2.1	19	85	9	53	20	17	17	43	1.88
7253927--7253995	25	2.7	25	77	8	68	55	10	8	26	1.62
7254910--7254953	16	2.8	16	86	6	54	25	2	0	72	0.96
7263919--7263954	2	18.0	2	88	0	54	0	44	5	50	1.25
7264291--7264332	22	1.9	22	85	9	59	38	0	2	59	1.10
7265782--7265830	24	2.0	25	88	4	73	36	26	22	14	1.92
7268805--7269035	101	2.3	101	97	0	435	32	8	19	39	1.82
7274796--7274853	12	4.7	12	79	14	55	70	5	3	20	1.21
7274789--7274849	30	2.0	30	87	6	88	70	4	3	21	1.21
7276817--7276864	21	2.3	21	85	0	69	33	29	8	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7277109--7277172	22	3.0	22	83	2	85	42	18	9	29	1.82
7280597--7280649	22	2.4	22	93	0	88	32	5	24	37	1.79
7280597--7280671	22	3.4	22	83	0	69	30	6	25	37	1.82
7283820--7283928	27	3.9	27	70	14	78	55	1	0	42	1.17
7284047--7284128	42	2.0	42	87	0	119	52	0	3	43	1.18
7283795--7284562	272	2.9	261	81	8	877	52	2	4	41	1.33
7284242--7284274	16	2.0	17	88	5	50	57	0	0	42	0.98
7284287--7284394	42	2.5	42	86	8	139	50	2	2	43	1.31
7284287--7284411	42	2.9	42	83	7	137	50	2	2	44	1.28
7284535--7284589	19	2.9	19	86	7	76	58	0	5	36	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50