genome.fa.s8.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  34  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15195538--15195579	2	22.0	2	90	9	70	50	0	0	50	1.00
15195673--15195715	2	22.0	2	86	13	63	48	0	2	48	1.14
15195673--15195715	17	2.8	16	89	10	63	48	0	2	48	1.14
15209616--15209731	57	2.0	57	96	0	214	40	14	15	29	1.87
15215399--15215427	13	2.3	13	94	5	51	55	0	6	37	1.27
15215688--15215891	108	1.9	108	92	0	345	35	16	4	43	1.68
15222837--15222906	29	2.4	29	90	0	113	45	10	25	18	1.80
15223186--15223260	26	2.9	26	97	0	141	17	22	24	36	1.95
15223231--15223304	35	2.1	35	92	0	121	17	20	20	41	1.90
15223597--15223732	41	3.2	41	73	6	146	30	5	8	55	1.53
15224484--15224574	35	2.6	35	98	0	173	21	21	30	25	1.99
15226824--15227684	431	2.0	430	96	0	1562	27	14	23	34	1.94
15228565--15228781	50	4.3	50	72	13	192	44	15	18	21	1.87
15229911--15230090	91	2.0	90	90	2	272	37	11	18	32	1.86
15230167--15230236	29	2.4	29	87	0	104	47	10	24	18	1.79
15230167--15230248	29	2.8	28	74	17	69	47	9	24	18	1.78
15230497--15230578	26	3.2	25	80	13	94	19	21	17	41	1.90
15232594--15232674	29	2.8	28	78	10	74	58	3	0	38	1.16
15232622--15232676	29	2.0	28	89	7	85	65	0	0	34	0.93
15245711--15245761	25	2.0	26	85	11	70	29	7	11	50	1.67
15256237--15256263	14	1.9	14	100	0	54	44	7	11	37	1.68
15259618--15259659	21	2.0	21	90	4	68	59	0	4	35	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15259151--15260362	251	4.9	246	77	10	905	49	5	10	34	1.61
15260444--15260524	34	2.4	34	100	0	162	65	2	2	29	1.18
15260444--15260524	17	4.8	16	72	11	72	65	2	2	29	1.18
15260500--15260539	21	1.9	21	89	0	62	62	2	2	32	1.22
15260848--15260886	19	2.1	18	85	4	51	43	2	2	51	1.29
15272259--15272284	2	13.0	2	100	0	52	50	0	0	50	1.00
15283818--15283889	34	2.1	34	94	2	128	40	13	13	31	1.85
15289489--15289561	30	2.5	30	78	12	73	38	2	1	57	1.22
15292235--15292335	28	3.7	27	81	4	112	42	10	5	40	1.64
15292261--15292362	27	3.7	27	82	2	105	46	10	3	39	1.57
15292343--15292407	27	2.4	27	87	5	96	44	10	7	36	1.68
15293555--15293649	30	3.2	30	81	11	106	35	12	5	46	1.65
15293702--15293766	33	2.0	33	84	6	87	36	12	18	32	1.88
15293880--15293954	28	2.6	28	82	4	87	58	6	1	33	1.32
15303628--15303677	10	5.0	10	76	9	57	22	4	0	74	0.99
15305191--15305319	48	2.7	48	82	0	168	28	18	21	31	1.97
15305287--15305398	60	1.9	59	85	5	154	32	17	15	34	1.91
15322423--15322487	33	1.9	34	84	9	89	10	10	7	70	1.33
15327426--15327460	17	2.0	18	94	5	63	45	0	0	54	0.99
15327470--15327502	16	2.1	16	94	0	57	39	0	0	60	0.97
15328178--15328203	6	4.3	6	100	0	52	30	0	34	34	1.58
15328187--15328297	56	2.0	56	90	0	177	27	18	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15345297--15345331	11	3.2	11	95	0	61	71	0	2	25	1.00
15347228--15347264	17	2.2	16	90	4	56	10	5	0	83	0.79
15351240--15351274	17	2.1	17	88	0	52	60	0	0	40	0.97
15351645--15351677	17	1.9	17	88	11	50	57	12	9	21	1.62
15352167--15352225	27	2.3	27	85	5	77	44	0	3	52	1.17
15352163--15352329	72	2.3	71	82	10	189	40	0	2	56	1.12
15352221--15352261	19	2.1	20	86	4	57	39	0	0	60	0.96
15352290--15352339	25	2.0	26	96	4	93	42	0	0	58	0.98
15353200--15353238	13	3.1	13	85	7	53	71	0	10	17	1.12
15355609--15355633	6	4.2	6	100	0	50	32	16	36	16	1.90
15356539--15357749	428	2.8	432	88	5	1740	32	12	14	40	1.83
15357963--15358435	244	1.9	243	86	3	666	26	15	18	38	1.91
15369871--15369907	16	2.5	15	87	12	51	43	5	0	51	1.24
15374437--15374500	2	32.0	2	100	0	128	50	0	0	50	1.00
15387806--15387831	13	2.0	13	100	0	52	0	15	0	84	0.62
15388285--15388318	16	2.1	16	88	0	50	38	0	5	55	1.24
15393417--15393465	2	24.5	2	100	0	98	51	0	0	48	1.00
15395809--15395844	2	18.0	2	100	0	72	50	0	0	50	1.00
15395870--15395904	16	2.4	14	86	13	52	65	5	5	22	1.36
15395873--15395903	16	1.9	16	93	0	53	61	6	6	25	1.45
15403866--15403899	16	2.1	16	88	0	50	38	0	5	55	1.24
15404077--15404129	22	2.4	23	81	9	65	47	0	3	49	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15404247--15404275	13	2.1	14	93	6	51	48	13	0	37	1.43
15406740--15406764	7	3.6	7	100	0	50	12	0	0	88	0.53
15409884--15410014	35	3.7	35	78	0	109	22	36	10	30	1.88
15412054--15412089	2	18.0	2	88	0	54	50	0	0	50	1.00
15412053--15412090	20	1.9	20	100	0	76	50	0	0	50	1.00
15418896--15418932	18	2.2	18	85	9	51	40	0	2	56	1.13
15418976--15419061	33	2.6	33	81	7	104	44	2	9	44	1.49
15418976--15419026	15	2.9	19	75	18	58	45	1	7	45	1.44
15421365--15421434	2	35.0	2	100	0	140	0	50	0	50	1.00
15421434--15421463	2	15.0	2	100	0	60	50	50	0	0	1.00
15422296--15422342	22	2.1	22	84	0	58	61	4	19	14	1.49
15426002--15426026	13	1.9	13	100	0	50	64	4	0	32	1.12
15426629--15426694	23	3.3	19	73	22	55	40	3	3	53	1.32
15429340--15429402	33	1.9	33	86	0	90	28	4	17	49	1.67
15440325--15440387	30	2.1	31	96	3	119	46	20	9	23	1.80
15447137--15447161	12	2.1	12	100	0	50	64	0	0	36	0.94
15448059--15448088	2	15.0	2	100	0	60	50	0	0	50	1.00
15454312--15454398	31	2.8	31	77	8	90	31	12	2	54	1.51
15461169--15461224	25	2.2	25	78	6	60	64	5	1	28	1.26
15461612--15461679	35	1.9	35	82	5	84	41	0	2	55	1.15
15464590--15464749	81	2.0	81	98	0	311	43	10	20	26	1.84
15467829--15467906	32	2.4	32	89	0	120	48	14	1	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15467829--15467925	32	3.0	32	84	0	95	47	15	4	32	1.64
15469070--15469234	70	2.4	70	85	3	217	33	20	21	25	1.97
15469063--15469234	69	2.5	69	83	2	220	33	20	21	25	1.97
15473121--15473201	32	2.5	32	85	0	108	20	11	28	39	1.87
15473762--15473796	17	2.1	17	88	0	52	2	17	2	77	1.02
15473779--15473820	21	2.0	21	90	9	68	0	21	0	78	0.75
15473779--15473819	12	3.6	12	81	18	52	0	21	0	78	0.76
15473999--15474068	33	2.3	28	83	13	86	71	0	25	2	1.00
15474000--15474047	16	2.9	16	81	3	60	70	0	25	4	1.04
15474169--15474237	23	3.3	23	65	23	69	18	27	14	39	1.90
15474173--15474248	40	1.9	40	97	0	143	19	30	13	36	1.90
15479884--15479983	23	4.3	23	84	0	83	18	12	28	42	1.85
15482023--15482072	24	2.1	24	92	7	84	32	22	26	20	1.98
15481975--15482059	39	2.2	39	84	0	116	30	17	30	21	1.96
15482023--15482083	24	2.5	24	86	5	70	31	21	29	18	1.96
15483921--15484585	92	7.2	92	87	3	859	29	13	23	34	1.92
15483921--15484585	183	3.6	183	85	5	884	29	13	23	34	1.92
15487265--15487504	78	3.1	78	90	1	338	19	23	18	38	1.93
15493119--15493552	111	3.8	113	86	5	592	45	26	10	16	1.81
15494922--15495069	40	3.5	39	73	15	134	37	26	10	25	1.89
15494925--15495127	87	2.3	89	90	2	322	38	24	10	26	1.88
15499756--15499843	22	3.8	23	85	7	108	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15499790--15499832	15	2.8	15	80	16	52	53	0	0	46	1.00
15499819--15499862	14	3.1	14	87	6	61	43	0	0	56	0.99
15499875--15499923	23	2.2	21	82	17	55	53	0	0	46	1.00
15501583--15501623	22	2.0	22	85	9	59	41	0	31	26	1.56
15504971--15505003	2	17.5	2	87	12	52	51	0	48	0	1.00
15516088--15516145	29	2.0	28	90	3	89	32	3	8	55	1.47
15520971--15521005	16	2.2	16	89	0	52	51	0	0	48	1.00
15523187--15523236	24	2.1	24	88	7	75	66	10	10	14	1.46
15523219--15523408	96	2.0	96	97	0	362	46	11	18	23	1.82
15523404--15523496	6	14.8	6	81	8	87	0	13	50	35	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50