genome.fa.s8.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  48  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19293341--19293658	23	13.7	23	72	3	163	29	10	26	33	1.89
19293438--19293750	46	6.8	46	71	7	204	26	9	28	35	1.88
19293447--19293749	69	4.4	69	76	3	216	26	9	28	35	1.88
19293433--19293657	92	2.4	92	83	0	288	28	8	27	34	1.87
19293438--19293757	23	13.9	22	69	10	133	26	9	29	35	1.88
19298111--19298231	62	2.0	62	86	3	172	33	19	19	28	1.96
19298584--19298617	10	3.0	12	83	16	54	44	41	0	14	1.45
19301446--19301472	12	2.2	12	100	0	54	33	25	0	40	1.56
19301941--19302273	181	1.8	183	87	2	499	40	26	11	21	1.88
19302126--19302528	201	2.0	203	83	3	519	41	24	11	22	1.87
19302471--19302519	22	2.2	22	86	13	66	48	28	6	16	1.69
19305321--19305358	11	3.5	11	96	0	67	31	44	0	23	1.54
19306139--19306172	13	2.8	12	86	8	50	50	20	0	29	1.49
19307334--19307566	119	2.0	119	88	0	349	30	24	19	25	1.98
19307957--19307998	21	2.1	20	86	8	59	23	0	9	66	1.21
19311234--19311299	32	2.2	29	75	15	69	33	22	10	33	1.89
19318304--19318357	2	28.0	2	85	7	76	3	0	46	50	1.19
19323212--19323551	29	11.7	29	77	9	291	38	9	11	40	1.74
19323212--19323551	57	5.9	57	74	9	303	38	9	11	40	1.74
19329881--19329934	26	2.1	26	89	0	81	29	18	12	38	1.88
19329925--19329992	26	2.7	25	73	13	75	33	10	13	42	1.78
19329894--19329985	26	3.6	26	74	11	82	30	13	15	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19336388--19336446	29	2.1	28	83	3	73	35	16	10	37	1.83
19336563--19336618	25	2.2	25	90	6	85	39	5	7	48	1.54
19336563--19336660	25	3.8	25	75	9	81	41	4	7	46	1.50
19339791--19339824	3	11.3	3	100	0	68	67	0	0	32	0.91
19340920--19340961	2	21.0	2	100	0	84	50	0	0	50	1.00
19341590--19341635	15	3.1	15	96	0	83	39	34	6	19	1.78
19354768--19354810	19	2.3	19	91	0	68	16	34	9	39	1.80
19365471--19365519	6	8.2	6	90	0	62	42	14	2	40	1.57
19365485--19365531	12	3.9	12	91	0	58	44	10	4	40	1.59
19366630--19366832	68	3.0	67	84	2	235	35	18	9	36	1.83
19368069--19368099	16	1.9	16	93	0	53	67	19	0	12	1.22
19381120--19381182	29	2.1	29	85	11	83	25	0	6	68	1.13
19397739--19398878	568	2.0	568	96	1	2079	30	11	16	41	1.84
19399833--19399919	22	4.6	20	69	18	69	33	8	13	44	1.73
19399841--19399887	22	2.1	22	92	0	76	27	8	17	46	1.76
19399864--19400061	35	5.6	35	80	2	225	35	8	12	43	1.71
19399867--19400061	107	1.8	106	86	1	282	36	8	11	43	1.71
19403589--19403696	35	3.1	35	95	0	189	25	10	38	25	1.87
19403589--19403725	35	3.9	34	88	1	166	24	12	37	26	1.91
19403589--19403725	70	2.0	70	85	2	186	24	12	37	26	1.91
19404552--19404596	23	2.0	23	95	0	81	11	24	33	31	1.90
19405538--19405718	66	2.7	66	90	1	283	23	13	22	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19414705--19414886	66	2.8	66	85	0	229	22	15	24	37	1.93
19434162--19434237	22	3.5	22	81	5	91	43	18	11	26	1.84
19434341--19434453	60	1.9	60	90	0	181	38	20	9	30	1.85
19439807--19439980	26	6.8	26	75	3	138	34	16	11	37	1.85
19439862--19439955	25	3.7	25	77	2	98	35	12	12	39	1.82
19439846--19439980	51	2.7	51	89	3	193	36	15	10	37	1.82
19439872--19439955	25	3.3	25	80	3	105	38	13	9	39	1.77
19439887--19439966	25	3.2	25	73	8	81	33	16	8	41	1.79
19439846--19439998	51	3.0	51	82	5	132	38	14	9	37	1.79
19441072--19441135	27	2.4	27	97	0	119	39	15	9	35	1.80
19442269--19442306	19	2.0	20	85	15	53	52	2	2	42	1.29
19446978--19447040	27	2.3	27	94	0	108	15	30	23	30	1.96
19446991--19447048	27	2.1	27	90	0	89	18	29	25	25	1.98
19469448--19469473	7	3.7	7	100	0	52	61	11	11	15	1.57
19470869--19470934	30	2.2	30	83	0	78	36	12	6	45	1.66
19471555--19471653	44	2.3	44	82	1	119	49	6	8	36	1.57
19483227--19483333	43	2.5	43	80	7	117	56	5	19	18	1.61
19483227--19483348	43	2.8	43	77	6	111	55	7	19	17	1.65
19489490--19489702	104	2.0	104	82	3	259	29	11	30	27	1.92
19489747--19489982	122	1.9	124	82	9	293	25	12	36	25	1.91
19489629--19489920	23	12.3	23	71	12	171	28	13	34	23	1.92
19490916--19491002	35	2.5	35	92	1	140	28	24	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19490943--19491122	35	5.2	34	77	11	145	32	27	13	26	1.94
19496937--19496992	23	2.4	23	84	3	76	37	12	28	21	1.90
19497088--19497152	21	2.9	23	73	17	73	32	16	27	23	1.96
19497073--19497151	23	3.5	23	75	13	83	34	12	29	24	1.92
19497259--19497309	23	2.2	23	96	0	93	29	21	23	25	1.99
19498173--19498241	31	2.2	31	84	0	93	33	18	13	34	1.90
19499001--19499056	29	1.9	29	82	7	69	60	12	5	21	1.51
19499204--19499270	31	2.2	31	83	5	82	58	11	4	25	1.52
19499340--19499396	22	2.6	22	76	15	57	54	15	8	21	1.68
19499588--19499632	21	2.1	21	84	8	56	62	8	2	26	1.37
19498993--19501624	353	7.5	350	77	9	2148	52	14	4	28	1.62
19499586--19500121	10	51.5	10	64	18	64	51	14	5	28	1.64
19499740--19499779	21	1.9	21	89	0	62	47	20	5	27	1.70
19500201--19500244	19	2.3	20	88	11	74	65	9	0	25	1.21
19500533--19500600	29	2.3	30	78	14	79	64	8	0	26	1.22
19500974--19501013	19	2.2	18	86	4	53	52	7	2	37	1.43
19500914--19501007	29	3.2	29	72	14	75	54	11	3	30	1.52
19501235--19501290	20	2.8	19	84	10	60	67	3	1	26	1.16
19501329--19501407	11	7.5	11	69	20	53	58	12	1	27	1.43
19501329--19501383	21	2.6	22	80	8	69	61	12	0	25	1.31
19501820--19501872	21	2.5	21	75	6	54	45	16	13	24	1.83
19502187--19502245	21	2.8	21	78	2	55	50	16	6	25	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19502335--19502375	21	2.0	21	90	0	64	48	14	4	31	1.65
19502277--19502374	41	2.4	39	78	11	97	54	13	3	29	1.54
19502507--19502606	21	4.9	21	71	8	71	51	17	6	26	1.68
19502277--19502606	10	31.9	10	62	17	59	49	16	5	28	1.68
19503108--19503187	41	2.0	41	82	9	101	51	16	2	30	1.57
19503202--19503252	21	2.4	21	74	6	50	49	21	7	21	1.75
19503310--19503371	22	2.9	22	75	17	58	59	8	3	29	1.42
19503578--19503628	20	2.5	20	78	9	50	50	17	7	23	1.72
19503869--19504003	11	12.6	11	69	12	50	56	8	3	31	1.48
19503881--19503929	21	2.3	21	79	6	55	53	8	4	34	1.50
19503934--19503993	21	2.8	21	85	7	68	60	6	5	28	1.43
19503923--19504003	21	3.8	21	80	6	65	59	9	3	27	1.46
19504093--19504150	21	2.7	21	81	2	62	50	12	3	34	1.57
19504115--19504162	20	2.3	22	89	7	73	50	8	2	39	1.44
19504115--19504171	20	2.7	21	86	8	62	52	7	1	38	1.39
19504135--19504250	59	2.0	58	81	10	137	54	12	1	31	1.47
19504355--19504400	21	2.2	21	84	7	58	50	13	4	32	1.61
19504282--19504421	73	1.9	73	82	2	174	51	14	3	30	1.59
19504528--19504574	22	2.2	21	84	3	58	51	14	0	34	1.43
19504766--19505168	21	19.4	19	66	16	90	51	16	3	27	1.62
19504766--19505168	10	38.8	10	67	15	131	51	16	3	27	1.62
19505031--19505168	32	4.4	31	74	7	100	53	17	3	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19505121--19505162	22	1.9	22	85	0	57	54	14	2	28	1.52
19505125--19505162	12	3.5	11	86	10	51	60	10	2	26	1.43
19505234--19505804	10	55.5	10	64	16	84	50	14	4	30	1.63
19505340--19505804	10	45.6	10	65	17	86	50	14	4	30	1.63
19505495--19505603	21	5.2	20	73	11	67	53	13	4	28	1.60
19506154--19506409	116	2.2	116	81	2	291	50	14	5	29	1.65
19506393--19506473	11	7.6	11	69	8	51	60	13	2	23	1.45
19506393--19506482	21	4.3	21	72	0	63	58	13	2	25	1.46
19506497--19506534	20	2.0	20	89	5	60	60	10	0	28	1.30
19506644--19506751	41	2.6	41	73	17	98	50	13	4	31	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50