genome.fa.s8.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  46  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19101300--19101329	10	3.0	10	95	0	51	3	36	0	60	1.14
19110055--19110088	15	2.3	15	85	5	52	64	0	0	35	0.94
19110184--19110224	19	2.2	19	100	0	82	46	7	19	26	1.76
19117842--19118159	47	6.8	47	81	1	325	26	16	34	22	1.95
19117850--19118159	94	3.3	92	83	1	359	26	16	35	22	1.94
19118148--19118303	47	3.3	47	85	0	215	26	19	26	27	1.99
19118810--19119020	31	6.8	31	90	1	291	23	18	20	37	1.94
19120646--19120984	156	2.2	156	87	2	466	33	18	17	30	1.94
19121367--19121634	31	8.6	31	90	0	410	23	17	20	38	1.93
19125040--19125199	77	2.1	75	95	3	293	30	21	15	31	1.95
19125814--19125863	21	2.4	21	75	0	55	24	36	8	32	1.84
19126549--19126781	31	7.4	31	78	4	241	39	16	17	27	1.91
19126545--19126808	62	4.2	62	80	3	251	37	18	17	26	1.93
19127163--19127283	63	1.9	63	81	3	145	34	13	28	23	1.92
19132327--19132365	21	1.9	21	89	5	62	38	28	12	20	1.89
19133186--19133238	27	2.0	26	88	3	79	50	1	1	45	1.23
19133183--19140564	155	47.6	155	99	0	14703	44	2	1	50	1.26
19133381--19133449	15	4.8	15	73	20	67	46	1	0	52	1.09
19133388--19133456	19	3.4	19	71	21	59	46	1	0	52	1.09
19133277--19133445	91	1.9	90	81	9	209	46	2	1	49	1.25
19133368--19133509	64	2.2	63	81	9	155	45	2	1	51	1.22
19133536--19133604	15	4.8	15	73	20	67	46	1	0	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19133543--19133611	19	3.4	19	71	21	59	46	1	0	52	1.09
19133432--19133600	91	1.9	90	81	9	209	46	2	1	49	1.25
19133523--19133664	64	2.2	63	81	9	155	45	2	1	51	1.22
19133691--19133759	15	4.8	15	73	20	67	46	1	0	52	1.09
19133698--19133766	19	3.4	19	71	21	59	46	1	0	52	1.09
19133587--19133755	91	1.9	90	81	9	209	46	2	1	49	1.25
19133678--19133819	64	2.2	63	81	9	155	45	2	1	51	1.22
19133846--19133914	15	4.8	15	73	20	67	46	1	0	52	1.09
19133853--19133921	19	3.4	19	71	21	59	46	1	0	52	1.09
19133742--19133910	91	1.9	90	81	9	209	46	2	1	49	1.25
19133833--19133974	64	2.2	63	81	9	155	45	2	1	51	1.22
19134001--19134069	15	4.8	15	73	20	67	46	1	0	52	1.09
19134008--19134076	19	3.4	19	71	21	59	46	1	0	52	1.09
19133897--19134065	91	1.9	90	81	9	209	46	2	1	49	1.25
19133988--19134129	64	2.2	63	81	9	155	45	2	1	51	1.22
19134156--19134224	15	4.8	15	73	20	67	46	1	0	52	1.09
19134163--19134231	19	3.4	19	71	21	59	46	1	0	52	1.09
19134052--19134220	91	1.9	90	81	9	209	46	2	1	49	1.25
19134143--19134284	64	2.2	63	81	9	155	45	2	1	51	1.22
19134311--19134379	15	4.8	15	73	20	67	46	1	0	52	1.09
19134318--19134386	19	3.4	19	71	21	59	46	1	0	52	1.09
19134207--19134375	91	1.9	90	81	9	209	46	2	1	49	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19134298--19134439	64	2.2	63	81	9	155	45	2	1	51	1.22
19134466--19134534	15	4.8	15	73	20	67	46	1	0	52	1.09
19134473--19134541	19	3.4	19	71	21	59	46	1	0	52	1.09
19134362--19134530	91	1.9	90	81	9	209	46	2	1	49	1.25
19134453--19134594	64	2.2	63	81	9	155	45	2	1	51	1.22
19134621--19134689	15	4.8	15	73	20	67	46	1	0	52	1.09
19134628--19134696	19	3.4	19	71	21	59	46	1	0	52	1.09
19134517--19134685	91	1.9	90	81	9	209	46	2	1	49	1.25
19134608--19134749	64	2.2	63	81	9	155	45	2	1	51	1.22
19134776--19134844	15	4.8	15	73	20	67	46	1	0	52	1.09
19134783--19134851	19	3.4	19	71	21	59	46	1	0	52	1.09
19134672--19134840	91	1.9	90	81	9	209	46	2	1	49	1.25
19134763--19134904	64	2.2	63	81	9	155	45	2	1	51	1.22
19134931--19134999	15	4.8	15	73	20	67	46	1	0	52	1.09
19134938--19135006	19	3.4	19	71	21	59	46	1	0	52	1.09
19134827--19134995	91	1.9	90	81	9	209	46	2	1	49	1.25
19134918--19135059	64	2.2	63	81	9	155	45	2	1	51	1.22
19135086--19135154	15	4.8	15	73	20	67	46	1	0	52	1.09
19135093--19135161	19	3.4	19	71	21	59	46	1	0	52	1.09
19134982--19135150	91	1.9	90	81	9	209	46	2	1	49	1.25
19135073--19135214	64	2.2	63	81	9	155	45	2	1	51	1.22
19135241--19135309	15	4.8	15	73	20	67	46	1	0	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19135248--19135316	19	3.4	19	71	21	59	46	1	0	52	1.09
19135137--19135305	91	1.9	90	81	9	209	46	2	1	49	1.25
19135228--19135369	64	2.2	63	81	9	155	45	2	1	51	1.22
19135396--19135464	15	4.8	15	73	20	67	46	1	0	52	1.09
19135403--19135471	19	3.4	19	71	21	59	46	1	0	52	1.09
19135292--19135460	91	1.9	90	81	9	209	46	2	1	49	1.25
19135383--19135524	64	2.2	63	81	9	155	45	2	1	51	1.22
19135551--19135619	15	4.8	15	73	20	67	46	1	0	52	1.09
19135558--19135626	19	3.4	19	71	21	59	46	1	0	52	1.09
19135447--19135615	91	1.9	90	81	9	209	46	2	1	49	1.25
19135538--19135679	64	2.2	63	81	9	155	45	2	1	51	1.22
19135706--19135774	15	4.8	15	73	20	67	46	1	0	52	1.09
19135713--19135781	19	3.4	19	71	21	59	46	1	0	52	1.09
19135602--19135770	91	1.9	90	81	9	209	46	2	1	49	1.25
19135693--19135834	64	2.2	63	81	9	155	45	2	1	51	1.22
19135861--19135929	15	4.8	15	73	20	67	46	1	0	52	1.09
19135868--19135936	19	3.4	19	71	21	59	46	1	0	52	1.09
19135757--19135925	91	1.9	90	81	9	209	46	2	1	49	1.25
19135848--19135989	64	2.2	63	81	9	155	45	2	1	51	1.22
19136016--19136084	15	4.8	15	73	20	67	46	1	0	52	1.09
19136023--19136091	19	3.4	19	71	21	59	46	1	0	52	1.09
19135912--19136080	91	1.9	90	81	9	209	46	2	1	49	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19136003--19136144	64	2.2	63	81	9	155	45	2	1	51	1.22
19136171--19136239	15	4.8	15	73	20	67	46	1	0	52	1.09
19136178--19136246	19	3.4	19	71	21	59	46	1	0	52	1.09
19136067--19136235	91	1.9	90	81	9	209	46	2	1	49	1.25
19136158--19136299	64	2.2	63	81	9	155	45	2	1	51	1.22
19136326--19136394	15	4.8	15	73	20	67	46	1	0	52	1.09
19136333--19136401	19	3.4	19	71	21	59	46	1	0	52	1.09
19136222--19136390	91	1.9	90	81	9	209	46	2	1	49	1.25
19136313--19136454	64	2.2	63	81	9	155	45	2	1	51	1.22
19136481--19136549	15	4.8	15	73	20	67	46	1	0	52	1.09
19136488--19136556	19	3.4	19	71	21	59	46	1	0	52	1.09
19136377--19136545	91	1.9	90	81	9	209	46	2	1	49	1.25
19136468--19136609	64	2.2	63	81	9	155	45	2	1	51	1.22
19136636--19136704	15	4.8	15	73	20	67	46	1	0	52	1.09
19136643--19136711	19	3.4	19	71	21	59	46	1	0	52	1.09
19136532--19136700	91	1.9	90	81	9	209	46	2	1	49	1.25
19136623--19136764	64	2.2	63	81	9	155	45	2	1	51	1.22
19136791--19136859	15	4.8	15	73	20	67	46	1	0	52	1.09
19136798--19136866	19	3.4	19	71	21	59	46	1	0	52	1.09
19136687--19136855	91	1.9	90	81	9	209	46	2	1	49	1.25
19136778--19136919	64	2.2	63	81	9	155	45	2	1	51	1.22
19136946--19137014	15	4.8	15	73	20	67	46	1	0	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19136953--19137021	19	3.4	19	71	21	59	46	1	0	52	1.09
19136842--19137010	91	1.9	90	81	9	209	46	2	1	49	1.25
19136933--19137074	64	2.2	63	81	9	155	45	2	1	51	1.22
19137101--19137169	15	4.8	15	73	20	67	46	1	0	52	1.09
19137108--19137176	19	3.4	19	71	21	59	46	1	0	52	1.09
19136997--19137165	91	1.9	90	81	9	209	46	2	1	49	1.25
19137088--19137229	64	2.2	63	81	9	155	45	2	1	51	1.22
19137256--19137324	15	4.8	15	73	20	67	46	1	0	52	1.09
19137263--19137331	19	3.4	19	71	21	59	46	1	0	52	1.09
19137152--19137320	91	1.9	90	81	9	209	46	2	1	49	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50