genome.fa.s8.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  41  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17521250--17521301	27	1.9	27	100	0	104	40	7	7	44	1.62
17522128--17522164	19	1.9	19	94	0	65	24	10	0	64	1.25
17522149--17522197	11	4.3	11	77	10	53	20	4	4	71	1.19
17529463--17529502	2	20.0	2	100	0	80	50	0	0	50	1.00
17530432--17530601	81	2.1	78	88	5	252	38	13	6	41	1.70
17535943--17536000	30	1.9	31	89	3	91	24	20	34	20	1.97
17536061--17536108	10	4.5	10	78	14	51	70	0	0	29	0.87
17536064--17536108	23	2.0	23	86	4	65	73	0	0	26	0.84
17549823--17549874	25	2.2	23	89	6	77	25	3	19	51	1.63
17549833--17549888	25	2.3	25	81	9	62	26	3	17	51	1.62
17549967--17550013	11	4.5	11	81	7	53	17	0	21	61	1.34
17549962--17550013	22	2.5	21	87	6	70	17	0	21	61	1.34
17550878--17550929	18	2.9	18	83	8	70	67	0	0	32	0.91
17550870--17550932	18	3.2	18	73	22	56	63	1	0	34	1.04
17551964--17552019	29	1.9	29	88	0	85	62	0	1	35	1.06
17552359--17552384	2	13.0	2	100	0	52	50	0	0	50	1.00
17555113--17555199	36	2.4	36	98	0	165	47	16	20	16	1.83
17558437--17558481	22	2.0	22	82	0	54	44	22	13	20	1.85
17558662--17558701	20	2.0	20	85	9	55	30	7	0	62	1.23
17560522--17560546	13	1.9	13	100	0	50	48	8	0	44	1.32
17561076--17561114	10	3.9	10	93	0	60	33	20	0	46	1.51
17571521--17571573	19	2.8	17	81	18	61	45	3	1	49	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17571697--17571745	21	2.3	21	96	3	89	36	24	0	38	1.56
17572935--17572972	19	2.0	19	94	0	67	28	0	28	42	1.56
17584426--17584471	20	2.3	20	96	0	83	45	21	4	28	1.71
17585032--17585072	13	2.9	14	86	13	50	24	0	7	68	1.15
17585045--17585102	14	4.1	14	76	8	55	18	1	8	70	1.21
17587361--17587463	54	1.9	54	89	0	161	41	6	10	40	1.66
17600456--17600559	36	2.9	36	97	0	190	4	24	20	50	1.67
17601308--17601745	239	1.8	240	83	2	576	30	14	17	36	1.90
17605886--17605911	11	2.4	11	100	0	52	19	19	7	53	1.68
17608506--17608567	27	2.3	27	100	0	124	30	14	6	48	1.69
17608555--17608745	90	2.1	90	97	0	355	32	8	14	45	1.74
17612816--17612882	2	33.5	2	87	0	98	56	0	43	0	0.99
17613153--17613191	20	1.9	20	84	5	51	33	7	25	33	1.84
17614472--17614506	12	2.9	12	91	0	52	65	0	34	0	0.93
17614543--17614674	53	2.5	52	85	5	174	60	6	33	0	1.21
17614649--17614739	18	5.0	18	72	18	82	61	4	32	1	1.23
17614635--17614781	24	6.2	24	72	18	87	64	3	30	1	1.18
17614645--17614681	6	6.3	6	85	14	51	67	0	32	0	0.91
17614596--17614831	71	3.2	71	76	14	226	61	4	32	1	1.25
17614753--17614846	44	2.1	44	83	13	113	63	5	28	2	1.27
17615341--17615521	60	3.0	60	95	0	317	24	17	30	27	1.97
17617985--17618019	15	2.4	15	95	4	63	17	2	0	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17617975--17618017	23	1.9	23	85	4	61	20	4	0	74	1.00
17618463--17618506	21	2.0	22	86	4	63	27	0	0	72	0.85
17619043--17619123	39	2.1	39	92	0	135	37	16	8	38	1.79
17619043--17619105	21	3.1	21	65	21	62	33	17	9	39	1.82
17621755--17621796	2	22.0	2	90	9	70	0	50	0	50	1.00
17627976--17628084	30	3.7	30	70	22	88	41	6	6	45	1.55
17636312--17636341	15	1.9	16	93	6	53	80	0	20	0	0.72
17638058--17638119	30	2.1	30	100	0	124	17	12	19	50	1.78
17646955--17647023	15	4.3	15	68	20	50	59	0	1	39	1.06
17652993--17653040	24	2.0	24	95	0	87	37	6	4	52	1.46
17657509--17657556	24	2.0	24	91	0	78	41	10	2	45	1.50
17660831--17660890	32	1.9	31	86	3	84	50	10	6	33	1.62
17660831--17660899	32	2.2	32	81	2	77	46	13	7	33	1.70
17661477--17661540	31	2.0	32	93	3	112	28	7	18	45	1.77
17670844--17670959	18	6.4	18	68	4	72	37	5	9	48	1.58
17670847--17670921	36	2.1	36	84	0	96	32	5	10	52	1.59
17670844--17670968	54	2.3	54	80	8	128	38	4	9	47	1.58
17671617--17671697	43	1.9	42	85	7	110	50	7	0	41	1.30
17672303--17672363	30	1.9	32	83	9	81	52	6	0	40	1.27
17672342--17672435	45	2.1	45	84	4	118	44	5	4	45	1.45
17672410--17672455	18	2.4	19	89	7	67	50	0	2	47	1.13
17672410--17672463	18	2.9	18	81	15	65	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17672972--17673062	42	2.3	38	85	10	114	42	9	7	39	1.67
17673813--17674225	206	2.0	205	95	0	745	35	17	16	30	1.92
17677431--17677474	21	2.2	20	84	12	54	45	9	4	40	1.56
17708847--17708906	30	2.1	29	81	6	68	31	8	21	38	1.83
17720414--17720511	19	5.1	19	62	9	54	19	15	42	22	1.88
17720410--17720511	38	2.6	40	83	6	129	18	14	43	23	1.87
17732488--17732533	20	2.2	21	92	3	76	34	0	13	52	1.40
17732497--17732613	61	1.9	61	94	1	209	43	0	11	43	1.47
17732908--17732993	42	2.0	42	93	0	145	27	6	15	50	1.69
17734088--17734142	23	2.4	23	93	0	92	34	10	16	38	1.84
17736193--17736221	2	14.5	2	100	0	58	0	48	0	51	1.00
17736169--17736276	56	2.0	53	96	3	189	12	37	5	42	1.67
17736249--17736276	2	14.0	2	100	0	56	0	50	0	50	1.00
17738167--17738204	19	2.0	20	84	5	51	34	5	10	50	1.59
17746918--17746942	13	1.9	13	100	0	50	48	8	0	44	1.32
17756781--17756810	15	2.0	15	93	0	51	33	10	26	30	1.89
17757109--17757300	35	5.5	35	84	1	213	36	7	13	42	1.71
17757084--17757265	70	2.6	69	82	7	199	38	6	12	42	1.68
17757109--17757321	106	2.0	106	88	1	320	37	7	13	41	1.73
17757081--17757298	71	3.1	70	79	5	246	37	6	13	43	1.70
17757140--17757323	35	5.2	35	82	2	143	36	7	14	41	1.73
17757081--17757323	71	3.5	70	79	3	231	37	6	13	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17760269--17760309	12	3.5	12	77	16	50	39	2	0	58	1.11
17778992--17779033	22	1.9	22	85	9	59	52	0	0	47	1.00
17780331--17780430	49	2.0	49	86	7	141	41	12	15	32	1.83
17782534--17782564	15	2.1	15	93	0	53	45	12	0	41	1.42
17782677--17782733	28	2.0	28	83	12	73	45	0	0	54	0.99
17782697--17782737	21	1.9	22	85	14	59	51	0	0	48	1.00
17782782--17782834	15	2.9	20	71	26	62	39	0	3	56	1.17
17789088--17789346	87	3.0	87	97	0	482	35	14	17	32	1.90
17794990--17795016	5	5.4	5	100	0	54	0	18	0	81	0.69
17805526--17805579	27	2.1	25	83	10	65	24	25	22	27	2.00
17806042--17806084	12	3.3	12	84	12	50	44	2	0	53	1.13
17806041--17806070	12	2.4	13	88	11	53	50	0	0	50	1.00
17806047--17806088	14	3.2	13	83	12	50	45	2	0	52	1.13
17813300--17813333	2	17.0	2	87	0	50	44	0	0	55	0.99
17814962--17814986	2	12.5	2	100	0	50	52	0	0	48	1.00
17819235--17819294	2	30.0	2	100	0	120	50	0	0	50	1.00
17835712--17835865	72	2.2	71	82	7	186	42	20	15	21	1.89
17836455--17836529	35	2.1	35	92	0	123	32	14	18	34	1.91
17836455--17836557	35	2.9	35	86	4	118	31	14	20	33	1.93
17848769--17848799	2	15.5	2	93	0	53	51	0	45	3	1.17
17853920--17854033	57	2.0	57	87	0	165	24	20	35	20	1.96
17855127--17855205	40	2.0	40	97	0	149	25	26	13	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17855197--17855305	53	2.1	53	98	0	209	25	26	10	37	1.88
17859225--17859271	21	2.3	21	82	7	62	29	0	12	57	1.36
17861400--17861619	81	2.7	81	89	1	325	28	11	34	25	1.91
17861488--17861543	23	2.4	23	79	5	60	25	12	37	25	1.91
17861544--17861686	23	6.1	23	77	2	106	27	12	34	25	1.92
17861545--17861679	70	1.9	70	83	0	171	28	13	34	24	1.93
17861638--17862355	104	6.9	105	78	3	659	29	14	33	23	1.94
17861650--17862369	208	3.5	207	85	3	914	29	14	33	22	1.94
17862146--17862190	23	2.0	23	81	0	54	31	15	33	20	1.93
17862826--17863257	55	7.9	55	80	4	424	12	10	29	47	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50