genome.fa.s8.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  14  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7284552--7284602	16	3.0	16	83	11	57	52	0	3	43	1.19
7284596--7284648	22	2.7	20	85	11	65	52	0	1	45	1.11
7284604--7284661	27	2.1	28	90	3	91	56	0	1	41	1.09
7284399--7284912	205	2.5	209	82	7	616	53	1	4	40	1.32
7284814--7284870	27	2.2	26	90	6	89	52	7	0	40	1.28
7291244--7291425	39	4.7	38	79	9	181	31	4	17	46	1.68
7291244--7291432	78	2.4	77	82	6	222	31	4	18	45	1.69
7291548--7291611	33	1.9	33	87	0	92	34	21	17	26	1.95
7291562--7291628	33	2.0	33	85	0	89	32	23	17	25	1.97
7292147--7292240	49	1.9	49	86	2	136	43	3	18	35	1.66
7294650--7294789	75	1.9	75	86	0	199	27	14	12	45	1.81
7301249--7301276	13	2.2	13	100	0	56	32	7	14	46	1.71
7301909--7302155	126	2.0	126	86	1	343	39	10	23	27	1.87
7304638--7304683	19	2.4	20	82	10	60	54	0	2	43	1.12
7305085--7305122	20	1.9	20	100	0	76	28	5	21	44	1.73
7305176--7305233	28	2.1	27	81	12	73	31	22	22	24	1.99
7306368--7306392	13	1.9	13	100	0	50	44	0	8	48	1.32
7310459--7310534	2	38.0	2	91	0	125	46	0	0	53	1.00
7312502--7312544	22	2.0	22	85	0	59	34	4	11	48	1.60
7324438--7324518	3	28.7	3	76	16	84	29	0	0	70	0.88
7324452--7324520	11	6.2	11	85	14	81	26	0	0	73	0.83
7324451--7324515	14	4.4	14	88	9	94	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7324620--7324712	10	9.2	10	72	15	66	23	1	1	74	0.95
7324619--7324683	17	3.8	16	84	13	78	21	1	0	76	0.86
7324675--7324713	14	2.7	14	81	18	53	28	0	5	66	1.12
7324622--7324710	3	33.7	3	72	20	51	24	1	1	73	0.98
7325308--7325340	16	2.0	17	88	5	50	27	9	0	63	1.24
7326455--7326497	16	2.5	17	82	17	54	20	2	0	76	0.89
7326443--7326503	22	2.7	22	72	20	54	18	6	1	73	1.12
7326493--7326524	13	2.5	13	94	0	55	18	0	9	71	1.12
7331904--7331974	2	36.0	2	94	2	126	49	0	0	49	1.01
7338802--7338826	3	8.3	3	100	0	50	32	0	0	68	0.90
7340087--7340149	28	2.2	28	91	0	99	28	12	4	53	1.58
7340135--7340193	30	2.0	29	93	3	100	38	8	3	49	1.50
7343074--7343131	25	2.3	25	87	0	80	24	6	24	44	1.77
7343086--7343241	75	2.1	75	80	0	168	25	10	26	37	1.89
7343176--7343246	25	2.8	25	84	0	79	28	9	25	36	1.88
7345058--7345097	21	1.9	21	84	0	53	30	15	22	32	1.94
7352093--7352141	22	2.2	22	85	7	64	46	22	6	24	1.74
7352137--7352185	23	2.2	23	92	3	82	36	30	4	28	1.76
7353035--7353085	22	2.3	22	83	6	68	39	29	13	17	1.88
7356542--7356626	43	2.0	42	86	2	116	52	8	10	28	1.64
7356827--7356872	18	2.6	18	89	3	67	65	2	2	30	1.16
7357235--7357295	17	3.4	17	76	24	63	67	0	3	29	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7357241--7357304	19	3.4	18	75	16	67	65	0	4	29	1.13
7358339--7358394	27	2.1	27	83	6	69	23	5	1	69	1.18
7359159--7359260	30	3.4	30	89	2	152	38	0	3	56	1.24
7359911--7359955	19	2.3	20	80	3	56	40	0	2	57	1.11
7361599--7361696	42	2.5	38	83	6	115	25	8	20	45	1.78
7361653--7361854	83	2.4	84	79	7	207	26	9	15	48	1.75
7361708--7361847	42	3.4	41	72	7	113	26	9	12	51	1.70
7362452--7362488	19	1.9	19	94	0	65	21	29	0	48	1.50
7363107--7363259	26	6.0	26	74	6	114	39	12	14	33	1.83
7363107--7363253	51	2.9	51	83	2	179	40	12	12	33	1.82
7371953--7372048	21	4.5	21	73	2	75	34	21	9	34	1.86
7371954--7372048	43	2.2	42	83	1	109	33	22	9	34	1.86
7372020--7372059	21	1.9	21	89	0	62	35	35	7	22	1.82
7372264--7372317	14	3.9	14	80	7	56	20	3	1	74	1.07
7372450--7372492	21	2.0	22	86	4	61	83	0	9	6	0.80
7374014--7374059	20	2.3	20	96	0	83	28	4	21	45	1.71
7376900--7376944	23	2.0	23	86	0	63	26	13	8	51	1.70
7379017--7379076	30	2.1	29	81	6	68	31	8	21	38	1.83
7383335--7383375	13	3.1	13	79	6	55	31	0	0	68	0.90
7386931--7386996	28	2.4	28	86	0	96	34	24	12	28	1.91
7387710--7387784	21	3.6	21	87	5	80	48	17	4	30	1.66
7387732--7387794	21	3.0	21	83	6	74	46	19	3	31	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7387865--7387928	21	3.0	20	78	10	74	48	18	7	25	1.75
7389331--7389368	17	2.2	17	86	9	51	26	21	28	23	1.99
7390744--7390993	126	2.0	126	93	0	428	36	10	18	35	1.85
7392255--7392317	2	31.5	2	96	0	117	50	0	0	47	1.01
7395309--7395365	2	28.0	2	92	3	96	47	0	3	49	1.18
7398965--7399049	33	2.5	33	86	1	116	67	0	2	30	1.04
7399265--7399322	15	3.9	15	79	0	53	32	18	12	36	1.88
7411905--7411959	26	2.1	26	82	0	65	65	7	0	27	1.19
7423662--7423778	35	3.4	34	73	11	114	30	12	22	34	1.91
7423687--7423790	32	3.2	32	76	20	115	26	12	25	35	1.92
7423645--7423817	67	2.6	66	86	5	233	27	12	24	35	1.92
7423808--7423860	23	2.3	23	96	0	97	26	7	33	32	1.84
7439515--7439548	17	1.9	18	88	5	52	20	5	14	58	1.57
7440238--7440425	72	2.6	73	80	9	199	39	17	20	22	1.92
7440856--7441030	67	2.6	68	83	6	225	25	11	25	37	1.90
7440856--7441004	35	4.5	32	74	12	129	24	11	26	37	1.89
7441624--7441662	4	9.8	4	94	0	69	53	20	0	25	1.45
7441660--7441694	2	17.5	2	100	0	70	51	0	0	48	1.00
7444252--7444309	27	2.0	29	83	9	75	36	20	18	24	1.95
7455093--7455130	19	2.0	19	100	0	76	42	31	0	26	1.56
7456387--7456455	35	2.0	35	82	0	84	30	11	23	34	1.90
7461032--7461065	15	2.3	15	100	0	68	26	29	32	11	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7466249--7466308	30	2.1	29	81	6	68	31	8	21	38	1.83
7470911--7471209	150	2.0	149	100	0	589	37	8	20	32	1.84
7480489--7480672	48	4.1	40	78	14	118	47	11	4	35	1.60
7480467--7480687	47	4.7	47	90	1	343	48	10	4	35	1.59
7480467--7480689	95	2.3	95	92	1	358	48	10	4	35	1.58
7481735--7481856	21	5.8	21	75	5	120	51	0	2	45	1.20
7481742--7481853	15	7.8	15	70	16	94	52	0	2	43	1.21
7481739--7481853	42	2.7	43	90	1	169	52	0	2	44	1.21
7481852--7482092	118	2.1	117	97	2	466	36	9	7	46	1.64
7482215--7482244	15	2.0	15	93	0	51	53	3	0	43	1.17
7484609--7484730	61	2.0	61	96	0	226	38	18	20	22	1.93
7489864--7489917	3	19.0	3	81	11	69	0	27	1	70	0.98
7503052--7503163	57	2.0	56	90	0	170	24	25	9	39	1.86
7508867--7508905	19	2.0	19	90	5	60	0	35	2	61	1.10
7510638--7510678	20	2.0	20	90	0	64	26	17	21	34	1.95
7511129--7511179	2	25.5	2	100	0	102	49	0	0	50	1.00
7511897--7512029	38	3.4	38	71	19	128	24	41	13	21	1.89
7511935--7512112	44	4.2	44	75	15	185	25	36	13	24	1.92
7511893--7512076	81	2.3	82	90	0	298	25	38	14	22	1.91
7511935--7512173	125	1.9	125	88	1	363	25	35	13	24	1.93
7524780--7524825	22	2.0	23	87	4	67	39	0	0	60	0.97
7524772--7524815	15	2.7	16	83	13	54	40	0	2	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7524788--7524838	23	2.3	22	79	3	57	41	0	1	56	1.10
7527388--7527434	21	2.3	21	82	17	64	44	23	8	23	1.80
7531249--7531282	7	4.7	7	88	3	50	14	0	0	85	0.60
7531239--7531282	15	2.7	15	82	10	52	15	0	2	81	0.78
7531886--7531983	43	2.3	43	82	8	110	52	19	7	21	1.70
7536803--7536859	18	3.0	19	85	12	73	35	0	0	64	0.93
7537935--7538004	26	2.7	26	82	4	70	30	12	20	37	1.90
7538012--7538065	21	2.6	21	85	5	74	24	11	25	38	1.88
7538051--7538193	26	5.7	26	74	8	107	27	11	20	39	1.87
7537964--7538139	90	1.9	93	84	4	241	27	11	22	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50