genome.fa.s8.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  21  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9680778--9680912	47	3.0	46	80	6	143	32	17	23	26	1.96
9680837--9680919	42	2.0	42	92	0	139	30	15	24	30	1.96
9680879--9681133	61	4.2	62	81	6	279	36	17	17	28	1.92
9680879--9681133	123	2.1	122	88	2	368	36	17	17	28	1.92
9681493--9681540	3	16.0	3	95	0	87	33	0	2	64	1.05
9683549--9683594	9	5.4	8	80	14	56	69	0	4	26	1.07
9687106--9687156	15	3.4	14	84	10	66	49	13	3	33	1.61
9688309--9688407	47	2.1	47	84	0	126	33	21	32	13	1.91
9689227--9689518	62	4.7	62	90	3	482	30	11	21	36	1.89
9689227--9689518	121	2.4	123	92	2	489	30	11	21	36	1.89
9692666--9692972	151	2.0	151	88	3	449	31	21	18	28	1.97
9694488--9694553	31	2.1	31	94	0	114	37	18	15	28	1.91
9694498--9694564	31	2.2	31	88	0	98	37	22	16	23	1.94
9694580--9694760	55	3.3	55	77	7	188	43	28	13	14	1.83
9695204--9695706	103	4.9	103	83	1	537	24	34	12	28	1.92
9695634--9695786	79	1.9	80	86	2	218	24	35	13	26	1.92
9695630--9695807	79	2.2	78	83	2	185	25	37	12	25	1.91
9695750--9695828	23	3.4	23	82	0	86	24	39	8	27	1.85
9708715--9708781	34	2.0	34	82	5	82	50	4	10	34	1.57
9719038--9719162	42	3.0	42	86	0	178	24	32	20	23	1.98
9720226--9720501	138	2.0	138	97	0	509	31	18	16	32	1.93
9721169--9721288	44	2.7	45	85	1	161	34	22	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9721142--9721294	45	3.4	44	80	2	162	37	20	15	26	1.92
9723435--9723481	21	2.2	21	96	0	85	27	19	14	38	1.91
9728403--9728436	4	8.5	4	93	0	59	52	0	47	0	1.00
9733099--9733123	7	3.6	7	100	0	50	12	0	0	88	0.53
9738451--9738485	3	11.7	3	100	0	70	0	31	0	68	0.90
9740889--9740933	23	2.0	23	82	8	56	24	11	11	53	1.68
9753783--9753811	2	14.5	2	100	0	58	0	48	0	51	1.00
9754000--9754026	2	13.5	2	100	0	54	0	48	0	51	1.00
9754027--9754071	2	22.5	2	95	0	81	48	2	0	48	1.13
9754290--9754358	35	2.0	35	97	0	129	46	8	7	37	1.63
9755474--9755519	20	2.2	22	88	7	69	60	6	0	32	1.22
9756741--9756777	2	18.5	2	100	0	74	48	0	0	51	1.00
9757801--9758078	99	2.8	99	90	1	409	26	20	35	17	1.94
9759493--9759554	25	2.4	26	76	12	67	53	4	3	38	1.39
9759965--9760005	21	1.9	21	85	5	55	58	2	7	31	1.38
9773571--9773642	29	2.4	30	82	11	78	33	5	18	43	1.73
9773571--9773669	30	3.3	28	77	14	83	34	6	17	42	1.74
9774446--9774640	28	7.1	28	77	5	148	37	8	14	38	1.78
9774446--9774681	83	2.9	81	77	9	228	36	8	15	39	1.78
9774439--9774696	111	2.4	108	81	2	275	37	8	15	38	1.79
9774429--9774696	28	9.8	28	73	8	131	36	8	16	38	1.80
9774547--9774696	55	2.7	56	75	5	142	38	8	16	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9776004--9776367	181	2.0	181	97	2	698	47	10	6	35	1.64
9776535--9776578	20	2.3	18	88	7	61	75	0	0	25	0.81
9777078--9777142	31	2.1	31	82	0	76	18	3	12	66	1.37
9777446--9777481	16	2.2	17	90	5	56	50	0	27	22	1.50
9778230--9778344	41	2.8	42	85	6	137	44	0	1	53	1.10
9778235--9778302	15	4.8	15	74	20	74	45	0	0	54	0.99
9778230--9778349	42	2.9	42	84	9	133	43	0	1	55	1.10
9778365--9778395	16	1.9	16	93	0	53	54	0	3	41	1.16
9778404--9778459	8	6.7	9	78	12	57	42	3	0	53	1.18
9778469--9778502	15	2.3	14	90	10	50	58	0	0	38	0.98
9778398--9778510	16	7.4	16	69	15	62	48	2	0	46	1.22
9785132--9785184	28	1.9	27	88	3	79	28	22	18	30	1.98
9785229--9785274	20	2.3	20	88	7	67	45	17	4	32	1.68
9795883--9795927	2	22.5	2	100	0	90	48	0	0	51	1.00
9799813--9799850	19	2.0	19	89	0	58	44	26	0	28	1.54
9806287--9806327	18	2.4	17	84	8	55	80	14	2	2	0.92
9812725--9812787	26	2.4	27	84	7	94	33	11	39	15	1.83
9813453--9813498	19	2.4	19	88	0	74	69	4	21	4	1.24
9814385--9814422	11	3.5	11	89	7	51	76	0	5	18	0.97
9818908--9818949	15	2.6	17	85	11	61	71	0	2	26	0.98
9823749--9823795	24	2.0	24	83	8	60	55	4	2	38	1.31
9826370--9826418	22	2.2	22	92	0	80	28	14	14	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9826501--9826564	33	1.9	33	83	0	83	35	17	7	39	1.78
9831120--9831210	2	45.5	2	95	0	164	48	1	0	49	1.08
9845728--9845758	7	4.4	7	91	0	53	9	16	12	61	1.56
9851712--9851753	16	2.5	17	76	3	50	54	2	0	42	1.13
9870707--9870787	42	1.9	42	97	0	153	40	9	9	39	1.72
9880222--9880260	19	2.1	19	90	0	60	43	10	12	33	1.77
9886939--9886977	19	2.1	19	85	0	51	43	0	5	51	1.24
9896015--9896225	109	1.9	109	91	0	343	37	17	2	41	1.64
9902082--9902307	112	2.0	114	91	3	368	42	15	10	30	1.81
9906676--9906747	17	4.1	17	75	8	63	70	1	25	2	1.08
9914670--9914710	20	2.0	20	85	0	55	31	14	7	46	1.72
9933517--9933562	20	2.3	20	96	0	83	34	17	13	34	1.88
9937346--9937389	24	1.9	23	90	9	72	40	6	9	43	1.63
9937346--9937393	22	2.2	22	88	0	69	41	8	8	41	1.65
9949030--9949101	35	2.1	35	97	0	135	36	12	20	30	1.90
9949040--9949115	35	2.2	35	83	4	91	40	10	25	23	1.86
9952418--9952473	25	2.2	25	90	0	85	23	28	21	26	1.99
9953928--9953995	4	17.8	4	73	19	56	1	29	0	69	0.98
9953928--9953997	7	9.3	7	75	18	61	1	30	0	68	0.98
9954880--9954906	11	2.5	11	100	0	54	29	0	0	70	0.88
9966416--9966480	31	2.1	31	85	2	87	46	3	15	35	1.62
9977430--9977476	20	2.3	20	100	0	94	27	4	10	57	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9978160--9978211	27	1.9	27	100	0	104	21	5	19	53	1.65
10000691--10000807	52	2.3	51	80	10	123	25	21	15	37	1.93
10007583--10007626	23	1.9	23	85	0	61	43	25	13	18	1.86
10011900--10012006	51	2.1	51	93	5	182	42	4	14	38	1.66
10012603--10012711	58	1.9	57	88	1	164	38	8	14	38	1.76
10016978--10017033	23	2.3	25	78	12	62	51	7	30	10	1.63
10019956--10020112	78	2.0	77	82	6	192	35	23	10	31	1.88
10021723--10021762	21	2.0	21	90	5	64	40	12	12	35	1.81
10021889--10021931	16	2.7	16	85	0	50	67	13	2	16	1.33
10023650--10023768	43	2.8	43	86	0	157	23	18	35	22	1.96
10023776--10023828	23	2.3	23	86	0	70	24	5	39	30	1.78
10036982--10037023	21	2.1	19	91	8	66	38	14	14	33	1.86
10036964--10037164	73	2.8	73	83	1	251	40	15	19	24	1.90
10045063--10045109	3	15.7	3	90	0	76	31	29	2	36	1.70
10046607--10046686	2	40.0	2	94	0	142	0	47	0	52	1.00
10052566--10052612	22	2.1	23	84	4	60	51	14	4	29	1.62
10054668--10054859	73	2.6	73	86	0	249	39	16	20	23	1.92
10065772--10065817	20	2.3	20	96	0	83	45	21	4	28	1.71
10066785--10066810	13	2.0	13	100	0	52	0	23	0	76	0.78
10071790--10071830	22	1.9	21	85	14	57	29	0	2	68	1.03
10071816--10071855	21	1.9	21	85	10	55	17	7	2	72	1.19
10071811--10071873	13	4.9	13	75	11	67	20	4	1	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10072779--10072846	17	3.8	18	71	21	54	17	44	20	17	1.87
10072779--10073053	38	7.5	37	68	15	151	18	40	19	21	1.92
10073493--10073524	16	1.9	17	93	6	57	3	3	6	87	0.73
10073486--10073526	18	2.3	18	87	8	57	2	7	4	85	0.81
10088559--10088602	2	22.0	2	100	0	88	50	0	0	50	1.00
10102001--10102036	18	2.0	18	94	0	63	8	22	30	38	1.83
10102058--10102111	18	3.0	18	88	0	90	7	20	31	40	1.80
10107028--10107093	14	4.9	13	77	12	53	69	1	4	24	1.15
10107339--10107377	17	2.2	18	90	4	62	74	0	0	25	0.82
10107340--10107405	15	4.1	17	78	20	63	71	0	1	27	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50