genome.fa.s8.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  40  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17225234--17225690	244	1.9	242	81	5	564	35	13	22	29	1.92
17242149--17242225	26	3.1	26	80	14	74	40	0	1	58	1.06
17242205--17242329	52	2.4	51	75	12	121	46	1	0	51	1.16
17242227--17242281	25	2.2	25	87	9	78	45	3	0	50	1.19
17242225--17242302	40	1.9	41	82	7	97	43	2	0	53	1.14
17242345--17242430	16	5.4	16	75	17	65	52	2	1	44	1.21
17242182--17242473	15	19.5	15	65	19	64	47	1	1	50	1.18
17242489--17242530	8	5.0	8	81	18	50	7	11	0	80	0.88
17245440--17245510	31	2.3	31	77	2	79	30	9	16	42	1.81
17252854--17252900	23	2.0	23	87	0	67	21	8	8	61	1.51
17253019--17253075	22	2.5	23	70	16	55	28	15	10	45	1.79
17255705--17255745	20	2.0	20	100	0	82	34	14	4	46	1.66
17257053--17257089	18	2.1	18	89	0	56	37	21	2	37	1.68
17262953--17262982	3	10.0	3	100	0	60	0	0	33	66	0.92
17275550--17275614	26	2.5	27	90	5	98	24	6	12	56	1.58
17275690--17275746	25	2.3	25	84	0	69	29	8	7	54	1.58
17275546--17275756	27	8.0	26	66	13	85	33	8	10	47	1.68
17279875--17279910	16	2.2	17	90	5	56	2	22	0	75	0.94
17280126--17280232	50	2.1	50	94	1	187	38	1	6	53	1.38
17281047--17281086	19	2.0	20	90	4	64	32	0	25	42	1.55
17282362--17282386	13	1.9	13	100	0	50	52	0	0	48	1.00
17302127--17302151	12	2.1	12	100	0	50	24	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17302811--17302843	15	2.1	16	88	5	50	36	9	18	36	1.82
17303020--17303163	71	2.1	69	83	10	177	29	4	3	62	1.32
17308790--17308844	24	2.2	26	87	6	78	74	1	0	23	0.91
17313978--17314035	30	1.9	30	86	10	82	32	13	13	39	1.85
17324766--17324812	23	2.0	24	83	4	60	55	2	0	42	1.12
17325315--17325345	2	16.0	2	93	6	55	51	0	0	48	1.00
17326133--17326197	34	1.9	34	87	0	94	38	23	13	24	1.91
17326500--17326555	20	2.8	20	77	0	58	37	10	14	37	1.81
17326651--17326690	21	1.9	21	94	0	71	40	17	10	32	1.83
17326596--17326751	61	2.6	60	81	2	168	33	17	12	35	1.88
17329518--17329559	20	2.1	20	95	0	75	42	14	21	21	1.88
17331015--17331077	28	2.2	28	83	5	74	25	26	14	33	1.94
17331144--17331219	39	1.9	39	94	0	134	44	23	9	22	1.81
17331640--17331819	93	1.9	93	90	0	288	26	22	23	27	2.00
17331944--17331987	21	2.1	21	95	0	79	45	20	11	22	1.83
17342119--17342179	29	2.2	28	91	5	97	50	14	8	26	1.71
17342110--17342284	89	2.0	88	92	3	289	46	13	11	28	1.78
17346600--17346636	10	3.5	11	82	10	51	24	0	21	54	1.45
17354242--17354271	15	2.0	15	93	0	51	53	10	6	30	1.60
17356991--17357030	3	12.7	3	89	10	62	62	0	2	35	1.09
17370650--17370692	22	2.0	22	86	9	61	20	4	30	44	1.72
17373341--17373378	21	1.9	20	89	10	60	55	5	5	34	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17382186--17382245	29	2.1	29	96	0	111	43	11	21	23	1.85
17383541--17383617	30	2.6	30	79	6	86	37	2	1	58	1.20
17384152--17384191	21	2.0	21	90	5	64	70	0	0	30	0.88
17386312--17386354	20	2.2	20	91	0	68	51	11	0	37	1.39
17386317--17386351	16	2.2	16	94	0	61	54	8	0	37	1.31
17386747--17386800	21	2.7	20	80	11	65	61	3	0	35	1.14
17386750--17386801	13	3.8	13	75	7	50	63	3	0	32	1.12
17386852--17386891	15	2.6	16	88	7	57	50	0	0	50	1.00
17387058--17387096	19	2.0	20	85	14	55	51	5	0	43	1.24
17387190--17387263	23	3.3	23	83	5	80	56	4	1	37	1.27
17387188--17387264	22	3.5	21	79	11	91	58	3	1	36	1.25
17387575--17387646	20	3.5	20	70	19	67	56	1	1	40	1.16
17387608--17387669	25	2.4	25	84	7	72	62	0	0	37	0.95
17391423--17391607	67	2.8	66	89	3	262	37	25	11	24	1.90
17391432--17391537	35	3.1	35	68	13	94	35	23	13	27	1.92
17391459--17391569	32	3.4	32	71	11	98	38	26	10	24	1.88
17393828--17393872	2	22.5	2	100	0	90	48	0	0	51	1.00
17393911--17393955	2	22.5	2	100	0	90	48	0	0	51	1.00
17396642--17396823	65	2.8	65	77	5	186	37	21	10	30	1.87
17408481--17408513	17	2.1	16	88	11	50	48	0	12	39	1.40
17411872--17412321	214	2.1	215	87	3	656	47	4	6	41	1.51
17412310--17412342	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17412072--17412537	238	2.0	237	87	4	679	47	4	7	40	1.52
17412479--17412524	23	2.0	23	84	12	60	41	0	8	50	1.33
17412783--17412816	16	2.1	16	88	0	50	41	0	5	52	1.25
17415462--17415510	24	2.0	24	96	0	89	51	4	6	38	1.46
17416425--17416652	81	2.8	80	84	2	314	41	9	7	41	1.67
17416471--17416605	41	3.4	41	63	28	101	42	8	6	41	1.62
17416894--17416929	18	1.9	19	88	5	56	41	11	22	25	1.86
17421173--17421247	22	3.4	22	75	3	78	32	14	17	36	1.90
17421148--17421269	45	2.7	45	86	3	140	31	15	19	33	1.93
17421196--17421315	23	5.3	22	77	7	116	33	14	16	35	1.89
17424590--17424919	86	3.9	85	84	4	416	21	19	30	28	1.98
17424590--17424919	172	1.9	169	86	4	466	21	19	30	28	1.98
17426318--17426485	81	2.1	81	87	0	237	27	32	19	20	1.97
17428740--17428859	31	3.9	31	93	0	177	37	18	16	27	1.92
17428904--17429172	55	4.9	54	84	4	299	45	28	12	12	1.79
17428904--17429176	110	2.5	109	85	3	350	45	29	12	12	1.79
17429698--17429853	46	3.4	45	74	11	145	24	34	15	25	1.95
17429728--17429853	23	5.4	23	74	7	105	25	35	14	24	1.93
17429789--17429853	22	2.8	23	81	4	69	23	36	18	21	1.95
17429723--17429853	46	2.8	46	75	10	151	25	35	15	24	1.94
17429620--17429981	194	1.9	194	84	3	485	23	33	13	29	1.93
17429947--17429990	23	1.9	23	90	0	70	25	27	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17430028--17430071	23	1.9	23	85	0	61	25	29	13	31	1.94
17429944--17430119	81	2.2	81	87	2	246	28	31	9	30	1.89
17433076--17433117	21	2.0	21	86	9	59	28	0	4	66	1.12
17437792--17437846	28	1.9	29	85	10	78	25	0	3	70	1.03
17439839--17439890	24	2.2	24	85	0	68	57	5	5	30	1.46
17439846--17439893	24	2.0	24	95	0	87	52	4	6	37	1.46
17449267--17449304	18	2.1	18	100	0	76	21	28	10	39	1.86
17455010--17455743	205	3.5	203	83	8	965	46	4	7	41	1.51
17473183--17473260	21	3.8	21	74	3	70	74	1	23	1	0.97
17473211--17473260	20	2.5	20	86	3	64	80	0	18	2	0.82
17473285--17473374	14	6.6	14	69	17	55	57	1	38	2	1.18
17473283--17473466	67	2.7	69	82	3	228	60	2	34	1	1.20
17473369--17473402	15	2.1	17	84	15	54	76	0	23	0	0.79
17473997--17474300	60	5.0	60	87	3	353	25	15	31	27	1.96
17473997--17474300	122	2.5	118	84	6	385	25	15	31	27	1.96
17484471--17484912	189	2.3	190	86	1	586	39	22	11	26	1.88
17485661--17485702	22	1.9	22	90	0	66	40	23	4	30	1.75
17486926--17487018	38	2.4	38	83	0	114	26	12	39	20	1.89
17489153--17489215	33	1.9	33	83	0	81	36	6	15	41	1.73
17489043--17489667	319	2.0	319	90	1	1002	35	10	12	42	1.76
17489779--17489835	29	1.9	30	85	3	80	50	5	15	28	1.65
17504084--17504269	93	2.0	93	95	0	336	21	11	23	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17506308--17506352	21	2.0	21	83	8	54	22	6	0	71	1.09
17509404--17509433	15	2.0	15	100	0	60	0	20	46	33	1.51
17511979--17512007	2	15.0	2	92	7	51	48	0	0	51	1.00
17512949--17512990	18	2.3	18	84	12	50	28	21	0	50	1.49
17513285--17513393	53	2.0	54	82	1	130	43	13	14	28	1.84
17513369--17513422	25	2.2	25	89	0	81	57	5	1	35	1.33
17513376--17513423	25	1.9	25	100	0	96	54	8	0	37	1.31
17513559--17513648	26	3.5	26	74	8	85	41	11	11	36	1.76
17513609--17513659	26	2.0	26	88	0	75	47	7	11	33	1.69
17518668--17518774	38	2.7	39	84	8	137	22	40	15	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50