genome.fa.s8.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  42  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17862821--17863257	110	4.0	110	83	2	538	12	10	29	46	1.76
17862831--17863257	220	1.9	219	87	2	615	12	11	29	47	1.76
17863290--17863395	31	3.4	30	85	6	131	25	17	23	33	1.97
17863302--17863396	31	3.1	31	87	0	136	25	15	23	35	1.94
17865645--17865829	81	2.3	81	92	1	309	20	18	32	28	1.96
17867270--17868032	86	8.9	86	86	0	950	27	30	19	22	1.98
17867270--17868032	258	3.0	258	87	0	1078	27	30	19	22	1.98
17873325--17873920	31	19.2	31	92	1	881	37	18	19	23	1.94
17874164--17874292	63	2.0	64	81	1	152	30	11	34	24	1.91
17897843--17897906	30	2.1	30	82	0	74	43	10	14	31	1.79
17905679--17905730	22	2.4	22	100	0	104	21	9	17	51	1.73
17908577--17908684	28	3.9	27	74	3	90	44	17	5	32	1.72
17908577--17908666	27	3.3	27	78	3	99	42	16	5	35	1.72
17919365--17919405	21	2.0	21	86	13	59	60	4	2	31	1.30
17923852--17923923	23	3.2	23	74	20	64	20	4	2	72	1.15
17923888--17923941	27	2.0	28	85	3	74	18	5	1	74	1.11
17924250--17924286	15	2.4	16	82	13	51	18	0	5	75	0.99
17926070--17926319	37	6.8	37	88	1	367	47	14	12	25	1.80
17926224--17926409	97	1.9	98	84	5	252	45	18	13	22	1.85
17926184--17926900	150	5.0	136	77	13	367	43	20	14	22	1.87
17926294--17926345	23	2.2	24	82	6	70	44	23	15	17	1.86
17926261--17926376	60	1.9	60	87	3	171	43	20	14	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17926314--17926989	38	17.9	38	86	4	913	42	20	14	22	1.88
17933567--17933630	23	2.8	23	77	20	64	23	4	1	70	1.15
17933595--17933648	27	2.0	28	85	3	74	18	5	1	74	1.11
17933950--17933989	15	2.6	16	84	15	57	22	0	5	72	1.04
17935591--17935661	11	6.3	11	75	9	54	12	1	5	80	0.95
17935593--17935624	14	2.4	14	94	5	57	9	0	0	90	0.45
17935585--17935642	25	2.2	26	79	14	66	8	5	5	81	0.99
17938154--17938190	18	2.1	18	89	0	56	37	16	18	27	1.92
17939323--17939384	33	1.9	32	90	3	97	61	1	8	29	1.34
17940609--17940655	18	2.7	18	83	3	60	48	6	12	31	1.66
17951745--17951774	9	3.3	9	95	0	51	3	23	0	73	0.98
17954744--17954944	73	2.8	73	82	0	240	39	16	20	23	1.92
17956428--17956470	18	2.5	18	85	7	54	67	4	27	0	1.10
17958234--17958275	15	2.8	15	96	0	75	21	0	50	28	1.49
17961065--17961102	20	1.9	20	88	0	58	68	5	23	2	1.23
17963689--17963853	73	2.3	73	91	2	260	39	15	21	23	1.92
17967275--17967301	8	3.4	8	100	0	54	22	0	0	77	0.76
17972106--17972139	11	3.1	11	86	0	50	20	5	17	55	1.62
17973341--17973380	2	20.0	2	94	0	71	50	47	0	2	1.14
17973470--17973504	17	2.1	17	94	0	61	31	14	34	20	1.92
17974539--17974581	21	2.0	21	86	8	61	60	0	39	0	0.97
17974591--17974650	22	2.8	22	78	12	70	73	0	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17974611--17974653	14	2.9	16	76	16	56	81	0	18	0	0.69
17974611--17974654	16	2.9	16	80	19	58	79	0	20	0	0.73
17974543--17974728	73	2.5	77	77	15	185	62	2	33	1	1.16
17975060--17975119	28	2.2	28	82	8	70	66	5	5	23	1.31
17975158--17975249	2	45.0	2	81	10	98	46	2	3	46	1.31
17994759--17994805	18	2.6	18	80	16	53	65	2	2	29	1.15
18000226--18000275	2	25.0	2	95	0	91	48	0	2	50	1.12
18002749--18002803	27	2.0	27	100	0	110	41	14	10	32	1.81
18007096--18007178	39	2.1	39	88	4	123	40	24	8	26	1.83
18007096--18007200	39	2.7	38	80	5	102	40	22	9	26	1.85
18010260--18010311	27	1.9	27	84	7	70	40	3	3	51	1.38
18012670--18012846	88	2.0	88	85	4	239	46	7	5	40	1.55
18013861--18013903	15	2.9	15	86	6	52	67	6	0	25	1.15
18018785--18018833	21	2.4	21	86	10	66	32	8	18	40	1.80
18018802--18018841	21	1.9	21	89	0	62	37	7	15	40	1.75
18021076--18021100	13	1.9	13	100	0	50	48	8	0	44	1.32
18025554--18025616	28	2.2	28	86	5	83	44	12	20	22	1.85
18028093--18028138	24	2.0	23	83	12	58	43	2	4	50	1.34
18029037--18029071	11	3.1	11	88	8	52	31	17	20	31	1.95
18029031--18029072	12	3.5	12	87	9	59	35	14	16	33	1.89
18030351--18030685	173	1.9	172	88	3	503	46	6	20	26	1.76
18030872--18030983	26	4.3	25	80	6	107	35	2	8	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18030895--18030958	25	2.5	25	89	2	92	34	1	7	56	1.38
18030872--18030983	51	2.2	51	83	3	134	35	2	8	53	1.45
18030888--18031012	27	4.8	26	83	5	135	38	1	6	53	1.36
18040533--18040885	175	2.0	176	92	0	591	37	14	16	31	1.89
18041365--18041416	22	2.3	22	83	6	59	71	0	17	11	1.15
18054874--18054930	27	2.1	27	90	6	89	15	14	50	19	1.77
18055872--18055979	53	2.0	53	100	0	216	44	3	40	11	1.58
18063459--18063510	15	3.8	13	79	20	54	61	0	3	34	1.14
18063921--18063989	18	3.8	18	75	9	59	76	0	1	21	0.86
18066282--18066380	23	4.1	23	69	21	69	51	2	1	45	1.19
18066284--18066394	27	4.4	27	68	17	94	54	2	1	41	1.25
18066977--18067020	15	3.0	14	87	9	61	45	2	2	50	1.27
18066982--18067020	15	2.7	15	92	4	62	43	2	2	51	1.29
18068656--18068768	29	3.9	30	76	16	112	40	14	14	30	1.85
18068635--18068737	26	3.8	25	76	17	107	42	12	13	31	1.82
18068647--18068811	55	2.9	57	84	6	210	41	12	14	32	1.83
18068873--18068937	24	2.5	27	73	14	73	44	10	12	32	1.76
18068844--18068904	30	2.0	30	83	0	77	50	8	9	31	1.65
18068907--18069060	30	5.3	30	84	2	163	35	12	14	37	1.85
18068855--18068965	54	2.1	54	82	3	134	42	9	13	34	1.78
18069746--18069782	2	18.5	2	100	0	74	51	0	0	48	1.00
18069834--18069872	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18073707--18073773	26	2.4	27	80	9	82	38	11	10	38	1.77
18078665--18078942	136	2.0	136	83	2	344	30	18	20	29	1.96
18079909--18079952	23	1.9	23	100	0	88	25	22	18	34	1.96
18080689--18080726	20	1.9	20	88	0	58	55	0	0	44	0.99
18081008--18081119	54	2.1	54	93	0	188	35	19	7	37	1.79
18083297--18083352	23	2.3	23	84	6	67	51	0	0	48	1.00
18083297--18083353	24	2.4	23	85	5	69	50	0	0	49	1.00
18083373--18083611	127	1.9	129	83	5	313	35	12	10	40	1.78
18083373--18083627	130	2.0	128	82	4	307	35	12	11	40	1.80
18093323--18093371	25	1.9	26	83	4	64	73	14	8	4	1.21
18117722--18117797	34	2.2	34	84	9	93	32	18	25	23	1.97
18117931--18118010	36	2.2	37	84	6	110	27	10	12	50	1.72
18118021--18118153	47	2.8	47	91	0	221	27	8	12	51	1.68
18118506--18118556	19	2.5	21	71	12	52	35	19	19	25	1.95
18120594--18120673	21	3.8	22	80	9	87	51	12	5	31	1.61
18124284--18124334	15	3.4	15	91	0	84	35	5	23	35	1.79
18124555--18124591	2	18.5	2	100	0	74	51	0	0	48	1.00
18131612--18131636	6	4.2	6	100	0	50	48	32	20	0	1.50
18131897--18131926	2	15.0	2	100	0	60	0	50	0	50	1.00
18140087--18140149	20	3.0	20	80	8	81	38	1	0	60	1.07
18140110--18140173	30	2.1	30	91	5	103	37	4	1	56	1.30
18147885--18147918	15	2.3	15	89	0	50	67	5	0	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18155209--18155265	27	2.0	28	83	12	73	24	1	10	63	1.36
18160199--18160231	17	1.9	17	93	0	57	48	15	12	24	1.78
18164928--18164970	2	21.5	2	95	0	77	51	0	0	48	1.00
18176251--18176359	49	2.2	49	93	0	182	26	16	34	22	1.95
18176337--18176383	24	2.0	24	100	0	94	25	17	36	21	1.94
18176287--18176434	76	2.0	74	88	6	219	26	16	35	21	1.95
18178087--18178118	6	5.3	6	92	0	55	21	31	0	46	1.52
18178110--18178179	30	2.5	27	79	11	61	18	31	1	48	1.57
18199638--18199667	12	2.5	12	94	0	51	40	20	10	30	1.85
18199689--18199715	11	2.5	11	100	0	54	44	14	14	25	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50