genome.fa.s8.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  43  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18199806--18199944	72	1.9	71	89	4	217	46	17	18	17	1.84
18200410--18200530	50	2.4	50	82	10	140	26	16	21	35	1.94
18200429--18200538	52	2.1	51	86	5	150	30	13	21	33	1.92
18201500--18201728	80	2.9	80	81	2	271	33	9	24	32	1.87
18203108--18203167	30	2.1	29	81	6	68	30	8	23	38	1.84
18209046--18209070	13	1.9	13	100	0	50	52	0	0	48	1.00
18216784--18216827	15	2.9	15	90	6	54	36	6	25	31	1.82
18217033--18217104	33	2.2	33	87	5	101	30	2	0	66	1.06
18217193--18217224	15	2.1	15	94	0	55	31	0	0	68	0.90
18221530--18221574	19	2.4	19	100	0	90	24	11	26	37	1.89
18222032--18222071	18	2.2	18	95	0	71	52	12	10	25	1.70
18241291--18241345	28	2.0	28	85	7	76	23	1	16	58	1.48
18244895--18244932	19	2.0	19	89	0	58	47	23	0	28	1.52
18253693--18253725	2	16.5	2	93	0	57	54	45	0	0	0.99
18253966--18254008	2	22.0	2	80	4	52	46	0	4	48	1.22
18263864--18264057	70	2.8	70	89	1	300	24	15	22	37	1.93
18264003--18264159	71	2.2	70	76	10	158	26	22	16	33	1.95
18266430--18266454	13	1.9	13	100	0	50	48	8	0	44	1.32
18267599--18267658	28	2.1	30	84	6	79	40	20	6	33	1.78
18270204--18270253	21	2.4	21	75	21	59	72	2	4	22	1.12
18271544--18271754	103	2.0	105	89	3	329	31	7	15	45	1.74
18276762--18276815	21	2.6	21	87	0	81	20	16	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18276804--18276971	26	6.6	26	76	5	137	26	11	23	39	1.88
18276803--18276971	52	3.3	49	79	8	171	26	11	23	39	1.88
18276832--18276993	74	2.2	74	79	2	164	27	11	22	38	1.88
18276951--18277012	22	2.8	22	76	11	72	30	8	24	37	1.84
18277024--18277108	43	2.0	44	85	2	118	45	25	8	20	1.78
18277025--18277108	22	3.8	22	82	4	98	46	26	8	19	1.77
18287648--18287672	12	2.1	12	100	0	50	40	16	0	44	1.47
18290736--18290868	54	2.4	54	87	2	185	32	17	18	31	1.94
18292704--18292753	21	2.3	22	75	6	57	22	10	22	46	1.81
18292765--18292920	23	6.6	23	76	10	102	33	25	12	28	1.92
18292784--18292921	26	5.7	26	81	9	125	33	25	13	27	1.94
18292908--18292960	21	2.5	21	81	0	70	33	28	18	18	1.95
18292950--18292991	22	1.9	22	90	0	66	45	14	9	30	1.77
18294358--18294410	22	2.4	22	100	0	106	32	9	15	43	1.78
18297222--18297269	26	1.9	26	84	16	66	22	12	6	58	1.57
18297508--18297552	23	2.0	23	86	0	63	37	11	17	33	1.85
18297579--18297640	23	2.7	23	78	9	65	35	12	24	27	1.92
18297855--18297940	23	3.7	23	79	3	84	24	12	29	33	1.92
18299744--18299984	61	3.8	61	79	11	252	36	9	18	35	1.83
18305534--18305786	119	2.1	119	88	1	364	45	24	11	19	1.83
18307171--18307218	22	2.2	22	100	0	96	35	31	18	14	1.91
18307237--18307266	15	2.0	15	93	0	51	30	20	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18307194--18307343	63	2.4	63	87	1	201	38	24	13	24	1.91
18308008--18308043	18	1.9	19	88	5	56	36	2	13	47	1.58
18311314--18311343	15	2.0	15	93	0	51	6	30	6	56	1.51
18315854--18315894	14	3.0	13	85	7	55	78	0	0	21	0.76
18315845--18315894	21	2.3	22	83	13	59	76	4	0	20	0.95
18317223--18317433	103	2.0	105	89	3	329	31	7	15	45	1.74
18320428--18320481	16	3.2	16	72	23	56	25	9	25	38	1.86
18321414--18321471	4	14.8	4	77	22	61	72	0	1	25	0.94
18321414--18321479	31	2.1	32	86	8	91	72	0	1	25	0.93
18338137--18338202	33	2.0	33	93	0	114	40	10	19	28	1.85
18338843--18338890	10	4.8	10	82	12	55	70	0	4	25	1.04
18338793--18338884	19	4.7	19	72	22	66	68	1	3	27	1.12
18339028--18339374	174	2.0	173	83	3	403	38	8	37	14	1.77
18340611--18340677	32	2.0	33	91	5	109	43	11	7	37	1.70
18340683--18340715	16	2.1	16	94	0	57	39	6	12	42	1.67
18340611--18340717	18	6.1	18	67	21	57	42	9	9	38	1.69
18340689--18340740	26	2.0	26	84	0	68	46	7	3	42	1.51
18341233--18341284	20	2.5	20	75	12	61	57	0	0	42	0.98
18341413--18341482	28	2.5	28	85	0	95	38	12	14	34	1.84
18342407--18342551	54	2.7	55	83	3	168	31	17	20	30	1.96
18346891--18346920	15	2.0	15	93	0	51	6	30	6	56	1.51
18350696--18350881	72	2.6	71	80	0	183	22	21	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18355611--18355645	18	2.0	18	94	5	63	42	5	11	40	1.65
18355707--18355731	5	5.0	5	100	0	50	20	0	20	60	1.37
18357083--18357127	20	2.2	20	80	0	54	66	8	20	4	1.36
18374285--18374337	28	1.9	27	88	3	79	37	15	7	39	1.75
18374285--18374717	27	15.9	27	82	4	280	35	11	14	38	1.82
18374324--18374717	55	7.2	55	82	4	338	35	11	15	38	1.83
18374312--18374627	82	3.9	81	80	4	296	34	10	15	39	1.81
18377225--18377288	13	4.9	12	78	17	58	67	0	6	26	1.14
18379850--18379893	17	2.4	19	85	11	56	20	0	2	77	0.88
18386376--18386413	17	2.1	19	90	9	62	39	10	15	34	1.82
18386421--18386475	21	2.7	20	83	8	74	18	3	3	74	1.11
18386641--18386707	23	2.7	25	79	13	75	25	0	2	71	1.00
18386673--18386709	14	2.7	14	80	19	51	27	0	5	67	1.12
18386965--18387008	21	2.1	21	83	8	54	27	0	2	70	0.99
18391385--18391414	11	2.7	11	94	0	51	90	0	0	10	0.47
18391665--18391712	20	2.3	21	85	3	71	39	2	4	54	1.32
18392464--18392493	11	2.7	11	94	0	51	70	0	0	30	0.88
18403196--18403270	30	2.6	29	79	10	73	52	4	10	33	1.55
18405546--18405593	17	2.8	17	93	0	69	62	2	6	29	1.31
18408319--18408673	175	2.0	178	92	2	590	41	13	15	29	1.85
18408937--18408995	30	2.0	29	83	3	73	33	6	1	57	1.35
18409238--18409294	18	3.2	18	73	9	53	35	1	3	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18414877--18414916	2	21.0	2	90	10	66	50	0	0	50	1.00
18414877--18414923	14	3.2	15	88	11	71	51	0	0	48	1.00
18414876--18414923	12	3.4	14	81	18	64	52	0	0	47	1.00
18414959--18414991	16	2.0	17	94	5	59	60	0	0	39	0.97
18414998--18415039	2	21.0	2	100	0	84	50	0	0	50	1.00
18417852--18417884	12	2.6	13	90	4	50	66	3	0	30	1.06
18421357--18421393	3	12.3	3	88	0	56	62	0	5	32	1.18
18421646--18421693	18	2.5	19	77	19	55	77	0	2	20	0.88
18421649--18421700	13	4.0	13	82	7	61	76	0	1	21	0.87
18421650--18421699	17	2.9	18	82	8	59	78	0	2	20	0.86
18421662--18421700	7	6.0	6	88	11	51	76	0	0	23	0.78
18424916--18424961	24	1.9	24	86	0	65	30	6	8	54	1.56
18428087--18428216	29	4.4	29	80	4	145	45	10	8	36	1.68
18428087--18428216	58	2.2	59	86	5	174	45	10	8	36	1.68
18429778--18429803	13	2.0	13	100	0	52	46	7	0	46	1.31
18431035--18431071	19	1.9	19	100	0	74	43	29	0	27	1.55
18440281--18440320	16	2.6	16	92	4	64	47	0	2	50	1.14
18440281--18440322	15	2.7	15	85	14	59	47	0	2	50	1.14
18440431--18440475	20	2.2	20	84	0	54	13	26	31	28	1.94
18440627--18440695	35	2.0	35	88	2	104	56	10	2	30	1.47
18440630--18440695	34	2.0	33	82	8	80	56	10	3	30	1.49
18441895--18442036	29	4.9	28	79	6	149	38	11	8	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18441872--18442034	59	2.8	58	81	4	175	42	11	7	38	1.70
18447189--18447448	68	3.8	66	78	5	245	36	10	20	33	1.86
18447182--18447448	136	2.0	136	84	1	356	36	9	20	33	1.85
18456520--18456592	32	2.3	32	85	4	94	24	31	21	21	1.98
18456734--18456932	68	2.9	68	87	0	272	33	20	10	36	1.87
18458996--18459173	27	6.5	28	85	4	213	32	16	10	41	1.82
18460304--18460371	19	3.6	19	100	0	136	14	16	36	32	1.89
18464461--18464502	2	21.0	2	100	0	84	50	0	0	50	1.00
18464503--18464536	2	17.0	2	100	0	68	0	0	50	50	1.00
18464540--18464581	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50