genome.fa.s8.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  3  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1514178--1514368	99	1.9	99	90	0	301	36	18	19	25	1.95
1519191--1519221	13	2.4	13	94	0	53	22	6	3	67	1.28
1519188--1519222	13	2.6	13	86	4	52	20	5	2	71	1.19
1527955--1527990	17	2.1	17	94	0	63	36	25	5	33	1.79
1537116--1537301	92	2.0	92	98	0	363	33	19	17	29	1.95
1554748--1554856	2	53.5	2	84	13	118	45	4	0	46	1.23
1556566--1556643	38	2.1	38	95	0	138	32	11	28	28	1.92
1569361--1569428	34	2.0	34	94	5	120	42	13	14	29	1.84
1580109--1580136	2	14.0	2	100	0	56	0	50	0	50	1.00
1580228--1580265	2	20.0	2	89	10	62	47	0	52	0	1.00
1580228--1580265	17	2.2	17	100	0	76	47	0	52	0	1.00
1580234--1580263	15	2.0	15	100	0	60	46	0	53	0	1.00
1581354--1581396	12	3.5	12	78	15	52	27	11	11	48	1.74
1591908--1591950	22	2.0	22	85	0	59	4	20	4	69	1.25
1593104--1593195	29	3.2	29	95	3	161	36	20	26	16	1.93
1593158--1593290	37	3.7	37	77	13	161	36	20	26	17	1.94
1593129--1593322	69	2.9	69	93	3	315	35	19	26	18	1.95
1593296--1593462	67	2.5	67	97	0	307	37	13	22	26	1.92
1593444--1593549	29	3.7	29	72	14	103	37	14	25	22	1.92
1593502--1593583	35	2.3	35	83	4	94	40	17	21	20	1.91
1593572--1593614	21	2.0	21	82	8	52	39	16	23	20	1.92
1593733--1593802	35	2.0	35	86	10	99	35	14	25	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1593819--1593887	29	2.4	29	75	0	75	43	13	20	23	1.86
1593867--1593904	20	1.9	20	94	0	67	34	10	21	34	1.87
1593974--1594043	32	2.2	32	78	0	77	38	15	24	21	1.92
1594106--1594187	35	2.3	35	89	0	128	40	18	23	18	1.91
1594097--1594182	35	2.8	29	73	19	91	37	17	25	19	1.94
1594135--1594276	44	3.2	44	81	11	155	39	17	23	19	1.92
1594235--1594305	29	2.4	29	90	0	115	33	18	29	18	1.95
1594228--1594311	29	2.6	33	76	18	104	35	17	27	19	1.94
1594192--1594354	79	2.1	79	86	0	227	38	17	24	19	1.93
1594106--1594434	129	2.6	127	81	5	351	39	18	23	19	1.92
1594293--1594376	21	3.9	21	73	6	60	41	16	22	19	1.90
1594264--1594404	50	2.8	50	84	2	167	39	17	23	19	1.92
1594363--1594463	29	3.5	29	81	0	112	39	15	21	22	1.92
1619503--1619550	2	25.0	2	91	8	82	52	0	0	47	1.00
1626084--1626151	27	2.5	27	85	0	82	10	73	0	16	1.09
1626120--1626163	15	2.9	15	86	0	61	11	72	0	15	1.11
1626111--1626249	45	3.2	43	76	9	120	17	67	1	13	1.30
1626090--1626176	21	4.0	21	76	8	75	12	71	0	16	1.15
1626183--1626238	3	18.7	3	83	7	51	21	69	1	7	1.22
1636230--1636291	2	32.5	2	87	9	85	50	1	0	46	1.11
1638718--1638755	10	3.5	11	82	10	51	34	2	5	57	1.35
1644295--1644341	24	2.0	24	87	8	69	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1661627--1661659	16	2.1	16	100	0	66	48	27	12	12	1.76
1664616--1664667	26	2.0	26	96	0	95	42	21	7	28	1.80
1677750--1677784	6	5.8	6	86	0	52	54	0	34	11	1.37
1677750--1677784	18	1.9	18	94	0	61	54	0	34	11	1.37
1679158--1679192	17	2.1	17	88	0	52	31	20	8	40	1.82
1679215--1679258	19	2.3	18	82	17	54	56	6	6	29	1.51
1692933--1693132	111	1.8	111	82	6	262	36	15	16	31	1.90
1693020--1693141	45	2.7	44	74	2	118	36	13	17	31	1.89
1693589--1693633	23	2.0	23	82	8	56	57	6	22	13	1.59
1718497--1718581	30	2.8	30	90	0	125	32	14	10	42	1.79
1723035--1723072	20	2.0	20	89	5	60	13	5	10	71	1.30
1729290--1729336	2	23.5	2	100	0	94	51	0	0	48	1.00
1730990--1731026	2	18.5	2	94	0	65	48	2	0	48	1.15
1731568--1731734	85	1.9	87	85	4	232	38	7	16	36	1.78
1733001--1733043	2	21.5	2	100	0	86	48	0	0	51	1.00
1734950--1735418	236	2.0	236	94	0	821	30	15	18	34	1.92
1739857--1739941	27	3.1	27	93	0	143	35	9	15	40	1.79
1744899--1744983	27	3.1	27	96	0	152	34	9	17	38	1.82
1754994--1755063	35	2.0	35	100	0	140	20	14	20	45	1.85
1757919--1757950	11	2.9	11	95	0	55	34	21	15	28	1.94
1757980--1758014	11	3.2	11	91	0	52	22	11	20	45	1.82
1771830--1771873	23	2.0	23	86	4	63	50	4	29	15	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771799--1771948	75	2.0	75	98	0	291	45	16	24	14	1.84
1771905--1771955	23	2.3	22	86	6	75	50	5	27	15	1.67
1776127--1776184	29	2.2	25	81	12	62	41	10	10	37	1.73
1776149--1776212	30	2.1	32	85	5	87	43	12	9	34	1.75
1776207--1776312	45	2.4	45	83	3	133	32	19	14	33	1.92
1776330--1776391	24	2.6	24	77	10	63	32	12	16	38	1.86
1776365--1776523	45	3.6	45	78	5	178	32	16	14	36	1.89
1784804--1784985	39	4.7	39	84	1	204	40	18	21	19	1.92
1789629--1789668	16	2.6	16	88	4	55	72	0	27	0	0.85
1789612--1789668	5	11.4	5	74	7	53	73	1	22	1	1.02
1794229--1794319	45	2.0	47	86	4	132	49	20	17	12	1.78
1794356--1794444	46	1.9	46	90	4	144	50	19	20	10	1.75
1799568--1799627	21	2.7	21	87	7	75	43	5	40	11	1.63
1802836--1802932	48	2.0	49	97	2	187	12	22	12	52	1.72
1813644--1813688	2	23.5	2	84	8	58	0	44	0	55	0.99
1817161--1817186	3	8.7	3	100	0	52	0	65	0	34	0.93
1818990--1819052	30	2.1	30	88	2	92	58	3	1	36	1.23
1853189--1853214	3	8.7	3	100	0	52	0	30	0	69	0.89
1855717--1855743	2	13.5	2	100	0	54	48	0	0	51	1.00
1869437--1869778	165	2.1	166	91	1	562	42	12	8	36	1.73
1880627--1880652	13	2.0	13	100	0	52	53	0	0	46	1.00
1880686--1880722	2	18.5	2	88	0	56	51	2	0	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1905392--1905429	19	2.0	20	84	5	51	63	2	0	34	1.09
1907421--1907480	25	2.4	25	80	2	66	55	5	0	40	1.22
1911316--1911411	48	2.0	48	100	0	192	29	18	22	29	1.98
1913930--1913977	25	2.0	24	87	4	69	20	0	14	64	1.28
1915598--1915637	6	6.7	6	100	0	80	0	65	0	35	0.93
1931487--1931566	40	2.0	40	100	0	160	40	12	12	35	1.81
1941251--1941358	53	2.0	53	94	0	189	38	17	10	33	1.83
1949652--1949686	16	2.2	16	100	0	70	48	5	28	17	1.69
1962003--1962038	2	18.0	2	88	0	54	0	50	5	44	1.25
1985499--1985548	24	2.1	24	88	0	73	36	16	20	28	1.93
1989949--1990016	32	2.1	32	83	5	84	55	7	5	30	1.51
1992151--1992205	25	2.2	25	78	15	60	34	5	10	49	1.61
2004551--2004610	26	2.3	27	88	8	88	41	16	28	13	1.86
2004674--2004708	13	2.6	14	86	4	54	54	0	0	45	0.99
2005324--2005389	29	2.3	30	82	10	75	65	3	0	31	1.08
2005982--2006037	28	2.0	28	100	0	112	39	17	14	28	1.89
2006049--2006113	33	2.0	33	84	0	85	29	30	23	16	1.96
2009559--2009873	155	2.0	154	94	4	555	49	6	11	32	1.65
2017329--2017411	38	2.2	38	88	0	130	36	18	7	38	1.78
2018247--2018411	66	2.5	66	87	3	226	24	25	24	24	2.00
2018778--2019188	218	1.9	218	92	2	691	39	9	17	32	1.83
2019598--2019674	37	2.2	33	74	24	84	48	12	14	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2019602--2019734	39	3.5	38	90	5	205	45	15	15	23	1.84
2019588--2019736	39	3.9	39	89	1	203	46	14	13	24	1.81
2035950--2035991	2	21.0	2	100	0	84	50	0	0	50	1.00
2042701--2042740	21	2.0	20	90	5	62	7	20	0	72	1.08
2042701--2042740	20	2.0	21	85	14	57	7	20	0	72	1.08
2056731--2056785	22	2.4	22	85	11	67	61	0	1	36	1.06
2056731--2056812	25	3.3	25	74	20	75	57	0	2	40	1.12
2056922--2057007	34	2.6	33	85	8	113	29	1	0	69	0.96
2056983--2057104	28	4.3	28	74	20	101	32	2	0	64	1.06
2056988--2057096	29	3.7	30	83	11	111	34	2	0	62	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50