genome.fa.s8.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  31  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14019306--14019351	15	3.1	15	84	12	67	58	17	0	23	1.38
14027849--14027965	54	2.1	55	89	4	175	15	45	8	30	1.76
14035570--14035657	42	2.1	43	89	2	133	21	31	21	25	1.98
14044945--14045212	89	3.0	89	94	0	464	24	26	14	35	1.93
14051126--14051262	22	6.2	22	74	10	102	27	8	20	43	1.81
14051236--14051420	23	8.2	21	72	11	100	21	13	28	36	1.91
14051282--14051336	22	2.4	23	81	3	67	20	18	30	30	1.96
14051233--14051406	45	3.9	45	74	4	154	21	13	27	36	1.92
14051228--14051420	90	2.2	91	86	2	266	21	12	27	37	1.90
14052807--14052889	36	2.3	36	85	4	105	24	39	15	20	1.91
14056563--14056595	17	1.9	17	88	11	50	42	9	3	45	1.51
14056756--14056899	29	5.0	28	82	7	162	36	12	11	39	1.79
14056734--14056898	59	2.8	57	82	6	195	40	11	10	38	1.76
14060894--14060989	38	2.6	37	81	8	115	23	12	37	26	1.91
14065827--14065876	20	2.3	22	74	22	52	14	18	36	32	1.90
14068668--14068708	20	2.0	20	90	0	64	41	2	14	41	1.59
14070223--14070376	29	5.3	28	81	8	166	37	10	9	42	1.72
14070211--14070370	59	2.7	57	83	6	194	40	10	9	39	1.72
14073118--14073165	21	2.3	20	79	10	60	14	22	6	56	1.61
14073123--14073163	21	1.9	22	90	5	66	17	24	7	51	1.70
14075099--14075181	22	3.8	22	79	4	69	26	12	24	37	1.90
14076096--14076121	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14078044--14078192	66	2.2	66	95	1	262	22	41	12	22	1.88
14085771--14085795	13	1.9	13	100	0	50	44	0	8	48	1.32
14091704--14091768	28	2.3	29	89	5	98	41	10	9	38	1.72
14091933--14091965	17	1.9	17	88	11	50	39	3	15	42	1.62
14093576--14093614	13	2.9	13	88	3	51	61	15	0	23	1.33
14100384--14100435	21	2.4	21	84	9	61	48	7	30	13	1.71
14106311--14106428	49	2.4	49	85	0	155	25	33	15	26	1.95
14116338--14116389	5	10.0	5	89	6	77	0	25	0	75	0.81
14116338--14116402	20	3.2	20	83	10	80	0	27	0	72	0.85
14124895--14125009	35	3.3	34	84	4	131	27	33	12	26	1.92
14126262--14126375	38	3.0	38	88	0	156	26	32	12	28	1.92
14133867--14135458	644	2.5	642	92	1	2618	34	15	14	34	1.89
14139990--14140037	20	2.4	20	79	6	53	35	16	6	41	1.74
14141768--14141794	2	13.5	2	100	0	54	0	0	48	51	1.00
14144568--14144627	21	2.8	21	82	2	66	45	25	10	20	1.81
14144616--14144734	38	3.1	38	78	2	123	42	18	18	21	1.90
14146599--14146678	26	3.0	26	79	3	79	42	13	10	33	1.78
14146726--14146788	28	2.2	29	82	2	74	52	11	11	25	1.70
14146627--14146903	125	2.2	125	79	8	294	40	12	14	32	1.84
14146481--14146800	153	2.1	153	79	7	344	41	12	13	32	1.82
14146743--14146798	29	2.0	28	92	3	94	50	10	10	28	1.71
14151536--14151568	2	16.5	2	93	0	57	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14169036--14169176	36	3.9	35	82	5	140	45	18	20	15	1.85
14169170--14169530	180	2.0	179	99	0	713	40	13	14	31	1.84
14174301--14174325	11	2.3	11	100	0	50	72	0	0	28	0.86
14174419--14174457	19	2.1	19	85	9	53	53	0	12	33	1.39
14177412--14177492	25	3.0	27	75	14	69	25	17	29	27	1.97
14177437--14177498	25	2.5	25	84	5	81	25	12	30	30	1.93
14181244--14181289	20	2.3	20	96	0	83	28	4	21	45	1.71
14191119--14191164	20	2.3	20	96	0	83	28	4	21	45	1.71
14191209--14191261	28	1.9	27	88	3	79	30	18	22	28	1.98
14191209--14191267	28	2.1	28	84	6	75	30	20	23	25	1.98
14201694--14201846	43	3.6	43	84	3	184	24	18	35	22	1.96
14201738--14201860	43	2.9	43	85	3	158	23	17	36	21	1.95
14209795--14209859	2	32.5	2	90	0	103	47	3	1	47	1.27
14213722--14213754	2	16.5	2	100	0	66	51	0	0	48	1.00
14214214--14214276	33	1.9	33	100	0	126	33	9	41	15	1.80
14214217--14214299	33	2.5	33	88	3	114	33	10	42	13	1.79
14220931--14220976	20	2.3	20	92	0	74	45	19	4	30	1.70
14225145--14225204	28	2.1	30	87	6	88	43	16	8	31	1.78
14225918--14225965	19	2.6	19	83	3	62	56	0	4	39	1.19
14228349--14228675	179	1.8	180	91	1	541	37	13	14	34	1.86
14229318--14229556	121	2.0	120	96	0	442	39	10	16	32	1.83
14231847--14231927	33	2.4	34	83	6	101	30	11	24	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14237043--14237260	107	2.1	106	86	3	314	36	6	13	43	1.71
14237012--14237260	35	7.1	35	82	4	263	36	6	13	43	1.70
14239803--14239906	38	2.6	40	82	7	124	21	16	40	22	1.91
14244392--14244434	22	2.0	20	82	8	50	32	11	27	27	1.92
14257399--14257439	21	1.9	22	90	5	66	17	24	7	51	1.70
14257452--14257495	11	4.3	10	80	11	54	0	22	9	68	1.18
14261632--14261675	22	2.0	22	86	0	61	40	22	6	29	1.80
14265040--14265163	43	2.9	43	84	7	162	23	18	37	20	1.94
14265979--14266019	21	1.9	22	90	5	66	17	24	7	51	1.70
14266032--14266077	11	4.4	11	83	10	69	0	23	10	65	1.24
14269023--14269071	21	2.3	21	75	6	55	53	6	26	14	1.64
14276180--14276300	37	3.3	37	84	1	145	28	9	36	24	1.88
14276482--14276528	22	2.2	21	84	3	58	27	23	21	27	1.99
14277876--14277922	21	2.2	21	84	0	58	27	23	17	31	1.96
14278222--14278340	43	2.8	43	84	2	141	21	36	19	23	1.95
14290079--14290134	28	1.9	30	82	7	71	33	25	16	25	1.95
14292968--14293026	25	2.4	25	85	5	75	22	16	32	28	1.96
14304023--14304052	15	1.9	16	93	6	53	36	16	13	33	1.88
14305091--14305157	30	2.2	31	84	5	84	1	23	0	74	0.90
14307922--14307965	22	2.0	23	90	4	72	63	2	18	15	1.41
14310826--14310875	22	2.3	22	85	0	64	28	24	20	28	1.99
14311144--14311261	43	2.7	42	80	5	112	23	33	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14315224--14315294	35	2.0	35	83	0	88	32	30	8	28	1.87
14323832--14323869	19	2.1	18	90	5	58	10	5	13	68	1.33
14335706--14335765	30	2.1	29	81	6	68	31	8	21	38	1.83
14339913--14339979	35	1.9	35	84	0	89	28	29	10	31	1.90
14340379--14340594	73	3.0	73	85	5	294	26	20	14	38	1.91
14345925--14345984	28	2.1	30	84	6	79	40	20	16	23	1.91
14347132--14347167	17	2.1	17	94	0	63	55	0	8	36	1.30
14350433--14350635	28	7.0	28	82	6	208	36	11	10	41	1.75
14350443--14350635	57	3.3	57	80	3	224	38	10	10	40	1.75
14358416--14358465	10	5.1	10	88	11	61	0	18	0	82	0.68
14358416--14358466	19	2.6	20	85	14	63	0	17	0	82	0.67
14358416--14358465	24	2.0	25	88	11	77	0	18	0	82	0.68
14365104--14365145	22	1.9	22	85	9	59	28	7	16	47	1.73
14370710--14370772	25	2.5	24	82	15	74	34	6	0	58	1.23
14370982--14371028	19	2.3	21	82	17	64	40	0	0	59	0.97
14371427--14371458	4	8.0	4	92	0	55	0	28	0	71	0.86
14386322--14386364	22	2.0	21	82	8	52	37	4	0	58	1.19
14387410--14387449	20	2.0	20	85	0	53	50	12	2	35	1.54
14390259--14390298	20	2.0	20	90	0	62	20	0	7	72	1.08
14394049--14394092	23	1.9	23	86	9	63	50	0	2	47	1.13
14400494--14400531	19	2.0	19	100	0	76	42	31	0	26	1.56
14401349--14401485	57	2.4	56	90	3	220	43	21	21	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14402371--14402445	31	2.4	31	82	10	91	40	10	16	33	1.82
14403722--14403757	11	3.3	11	100	0	72	27	16	30	25	1.97
14403891--14404061	85	2.0	85	80	5	204	38	15	10	35	1.82
14405369--14405393	13	1.9	13	100	0	50	48	8	0	44	1.32
14425474--14425511	19	2.0	19	100	0	76	42	31	0	26	1.56
14436712--14436829	59	2.0	59	100	0	236	30	11	10	47	1.73
14442527--14442576	17	3.2	17	67	21	54	32	6	10	52	1.59
14442515--14442576	30	2.1	30	100	0	124	32	6	9	51	1.60
14448589--14448701	56	2.0	57	89	1	174	34	17	11	36	1.86
14455059--14455088	12	2.5	12	94	0	51	20	0	0	80	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50