genome.fa.s8.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  25  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11262808--11262854	8	6.1	8	82	7	62	59	0	40	0	0.97
11262810--11262857	15	3.1	15	91	5	78	64	0	35	0	0.94
11264061--11264124	29	2.3	26	80	14	83	17	17	35	29	1.92
11264068--11264137	29	2.4	29	95	0	122	18	15	34	31	1.92
11296278--11296332	21	2.6	21	82	2	65	45	14	10	29	1.79
11297545--11297576	15	2.2	14	94	5	55	12	15	0	71	1.14
11297545--11297576	7	4.4	7	92	7	55	12	15	0	71	1.14
11298859--11298888	3	10.0	3	92	0	51	63	0	0	36	0.95
11300503--11300762	130	2.0	129	99	0	511	43	9	21	25	1.81
11311298--11311341	22	2.0	23	86	4	63	68	22	0	9	1.18
11313562--11313590	10	2.7	11	89	10	51	17	27	6	48	1.72
11324914--11325016	53	1.9	53	92	0	170	51	17	20	10	1.75
11338201--11338342	29	4.9	28	85	6	185	38	10	13	37	1.79
11338201--11338375	59	3.0	58	84	5	226	38	10	12	38	1.77
11338201--11338352	28	5.3	28	83	10	173	39	9	12	38	1.76
11341021--11341396	20	18.3	20	81	5	284	43	8	6	41	1.61
11341021--11341396	10	37.6	10	79	0	239	43	8	6	41	1.61
11341022--11341394	32	11.5	32	76	7	232	43	8	6	41	1.61
11345283--11345328	20	2.3	20	80	0	56	8	21	8	60	1.53
11352860--11352903	10	4.3	10	82	5	52	22	6	2	68	1.25
11352850--11352903	21	2.7	20	82	5	63	25	5	3	64	1.32
11356567--11356607	20	2.1	19	95	4	73	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11360680--11360723	10	4.3	10	82	5	52	22	6	4	65	1.35
11360670--11360723	21	2.7	20	83	11	65	25	5	5	62	1.39
11364918--11364966	17	2.7	18	78	21	57	24	0	6	69	1.11
11368803--11368859	2	28.5	2	89	0	51	38	0	12	49	1.41
11368810--11368859	22	2.3	22	89	0	73	36	0	14	50	1.43
11381427--11381472	20	2.3	20	88	7	67	32	4	17	45	1.68
11381517--11381569	28	1.9	27	88	3	79	30	18	22	28	1.98
11381517--11381575	28	2.1	28	84	6	75	30	20	23	25	1.98
11396589--11396640	21	2.4	21	80	3	68	57	3	23	15	1.54
11399774--11399822	16	3.3	15	82	5	55	59	2	0	38	1.09
11403829--11403896	30	2.3	30	84	0	91	52	4	29	13	1.59
11403892--11403926	18	1.9	18	88	0	52	48	8	28	14	1.73
11404631--11404677	9	4.9	9	80	14	58	27	0	12	59	1.34
11406404--11406433	15	2.0	15	93	0	51	33	16	13	36	1.88
11406419--11406490	30	2.6	26	79	12	90	34	20	13	30	1.92
11407019--11407219	74	2.8	74	80	3	194	30	15	12	40	1.85
11407208--11407502	127	2.3	127	95	1	527	30	21	11	36	1.89
11409714--11409750	2	18.5	2	94	0	65	48	2	0	48	1.15
11411074--11411129	16	3.7	15	76	13	53	50	3	0	46	1.19
11411072--11411111	16	2.7	15	84	7	55	50	5	0	45	1.23
11413933--11414140	73	2.9	71	81	12	203	21	19	18	40	1.92
11414024--11414163	73	1.9	73	86	2	201	22	17	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11414023--11414186	73	2.2	73	82	2	195	22	18	19	39	1.92
11422923--11422972	10	5.0	10	78	7	57	2	12	4	82	0.90
11426204--11426247	23	2.0	21	86	8	61	27	25	11	36	1.90
11439648--11439697	22	2.2	23	85	3	66	50	10	16	24	1.75
11440245--11440332	35	2.6	34	75	1	95	27	17	23	31	1.97
11444190--11444419	119	1.9	119	94	1	408	33	13	12	40	1.83
11448304--11448352	21	2.4	21	82	3	55	53	2	0	44	1.12
11449182--11449230	23	2.3	23	86	10	68	55	2	0	42	1.11
11451031--11451267	27	8.7	27	84	4	264	39	16	10	34	1.82
11452205--11452263	21	2.8	21	84	5	75	35	16	13	33	1.88
11453163--11453249	15	6.1	15	71	20	62	48	1	0	50	1.08
11453141--11453264	34	3.7	34	69	16	82	45	1	1	50	1.20
11453166--11453319	64	2.4	61	79	10	157	42	0	1	55	1.12
11453160--11453401	41	6.1	40	67	17	137	42	1	1	54	1.20
11453121--11453401	155	1.8	156	89	2	449	40	1	2	54	1.24
11453290--11453339	27	1.9	25	92	8	82	46	0	4	50	1.20
11453290--11453346	27	2.2	26	87	6	80	43	3	3	49	1.36
11453693--11453793	41	2.4	42	95	1	177	42	0	0	56	1.06
11453716--11453791	8	9.5	8	70	14	50	42	1	0	56	1.07
11453690--11453791	16	7.3	15	70	20	78	42	0	0	56	1.05
11454681--11454844	64	2.6	64	85	0	220	25	14	29	30	1.95
11455160--11455215	29	1.9	29	88	0	85	35	3	23	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11459854--11460019	54	3.1	54	85	0	242	26	38	13	21	1.91
11461381--11461415	14	2.5	14	100	0	70	57	0	14	28	1.38
11463969--11464014	19	2.4	20	82	10	60	56	0	0	43	0.99
11475712--11475751	20	2.0	20	90	0	62	22	20	22	35	1.96
11479207--11479237	4	7.8	4	100	0	62	51	22	0	25	1.48
11487891--11487930	19	2.2	19	86	4	55	52	0	0	47	1.00
11488764--11488806	11	3.8	11	81	3	50	65	2	32	0	1.06
11493448--11493515	28	2.4	28	92	0	109	22	19	30	27	1.97
11498941--11499029	34	2.5	37	87	5	121	30	34	10	24	1.88
11498941--11499033	37	2.6	34	88	5	123	30	34	10	24	1.90
11498971--11499049	37	2.1	38	90	6	126	31	30	7	30	1.85
11498971--11499058	37	2.4	36	85	10	92	30	32	7	28	1.86
11500194--11500254	20	3.1	20	73	2	61	34	8	37	19	1.82
11509068--11509100	2	16.5	2	100	0	66	48	0	0	51	1.00
11509151--11509175	2	12.5	2	100	0	50	48	0	0	52	1.00
11510013--11510080	30	2.2	30	87	7	93	52	1	4	41	1.30
11510024--11510085	30	2.0	30	90	3	97	59	0	3	37	1.13
11511559--11511612	4	13.5	4	84	7	65	48	27	0	24	1.52
11511580--11511628	12	4.1	12	91	0	71	51	14	0	34	1.43
11517217--11517310	36	2.5	36	78	13	109	51	1	0	47	1.07
11517246--11517285	7	5.6	7	87	3	53	60	0	0	40	0.97
11517204--11517277	29	2.5	30	76	21	77	58	1	0	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11517257--11517309	8	6.6	8	87	10	56	49	0	0	50	1.00
11517284--11517400	39	2.9	39	76	17	107	46	2	2	48	1.29
11517784--11517853	30	2.3	30	80	7	88	22	22	10	44	1.83
11517847--11517940	47	2.0	47	81	4	109	32	20	13	32	1.92
11517894--11517953	31	1.9	31	89	0	93	31	16	15	36	1.90
11520839--11520890	28	1.9	27	84	7	70	28	19	19	32	1.96
11520943--11520981	20	2.0	20	100	0	78	46	20	5	28	1.72
11521904--11521949	24	1.9	24	86	0	65	43	8	30	17	1.79
11523529--11523732	40	5.0	40	80	4	228	57	20	1	20	1.50
11523529--11523731	84	2.5	81	82	3	237	58	19	1	20	1.49
11523843--11523875	16	2.1	17	88	11	52	39	0	6	54	1.25
11527790--11527912	42	2.9	42	86	2	158	20	21	32	25	1.98
11534380--11534470	46	2.0	46	97	0	173	37	20	17	24	1.94
11547708--11547744	17	2.2	17	90	0	56	32	16	32	18	1.93
11550131--11550165	18	1.9	18	94	0	61	40	34	22	2	1.69
11550231--11550278	21	2.3	20	79	10	51	37	2	14	45	1.57
11550770--11550814	22	2.0	22	82	0	54	44	0	6	48	1.29
11552539--11552564	13	2.0	13	100	0	52	38	30	0	30	1.58
11552653--11552761	30	3.7	30	76	9	98	55	2	4	37	1.35
11554151--11554188	2	19.0	2	100	0	76	50	0	0	50	1.00
11561703--11561728	12	2.2	12	100	0	52	38	0	0	61	0.96
11567299--11567328	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11571921--11571971	15	3.4	15	81	10	59	50	17	1	29	1.57
11577827--11577862	17	2.1	17	94	0	63	55	0	8	36	1.30
11579867--11579920	28	2.0	27	88	3	81	25	22	20	31	1.98
11597786--11597826	21	1.9	22	95	5	75	53	7	21	17	1.67
11597785--11597833	21	2.3	21	85	3	71	59	6	18	16	1.57
11607536--11607586	22	2.3	22	83	6	59	45	0	0	54	0.99
11607520--11607586	18	4.1	17	73	13	68	47	0	0	52	1.00
11613684--11613721	20	1.9	20	94	0	67	47	0	0	52	1.00
11613726--11613778	19	2.7	20	77	14	56	58	0	0	41	0.98
11613747--11613780	14	2.4	14	95	0	59	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50