genome.fa.s8.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  12  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6510005--6510043	18	2.1	19	85	4	53	25	5	0	69	1.09
6511576--6511635	30	2.0	30	81	18	72	50	3	1	45	1.28
6511986--6512047	21	3.0	22	81	11	60	74	0	1	24	0.91
6513203--6513451	123	2.0	123	97	0	471	32	20	18	28	1.97
6522210--6522651	59	7.7	59	81	8	536	32	11	20	35	1.89
6522326--6522651	56	5.8	52	70	16	201	32	11	19	35	1.89
6522443--6522651	62	3.6	56	78	10	222	32	11	20	35	1.88
6522434--6522651	56	3.7	59	81	6	264	32	11	19	36	1.87
6524974--6525001	14	2.0	14	100	0	56	78	14	0	7	0.95
6552759--6552785	2	13.5	2	100	0	54	51	48	0	0	1.00
6553316--6553375	2	30.5	2	82	15	63	50	1	43	3	1.28
6553327--6553383	29	2.0	27	93	6	96	47	3	40	7	1.48
6558906--6559024	59	2.0	60	86	1	168	28	15	10	45	1.79
6567764--6568114	75	4.8	73	84	6	446	18	35	8	37	1.82
6567764--6568126	146	2.5	145	91	2	568	18	34	8	38	1.81
6578401--6578443	16	2.6	17	85	7	61	53	0	0	46	1.00
6578473--6578511	17	2.2	18	86	4	53	38	0	0	61	0.96
6580575--6580608	2	18.0	2	88	11	54	0	52	0	47	1.00
6582486--6582535	22	2.3	22	86	3	66	80	0	10	10	0.92
6582415--6582642	117	1.9	118	80	8	259	58	2	9	29	1.41
6582662--6582706	22	2.0	22	83	8	56	48	2	2	46	1.26
6584157--6584192	18	2.1	18	94	5	65	66	5	0	27	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6584151--6584191	21	2.0	21	85	9	57	65	7	0	26	1.18
6584701--6584780	40	2.0	40	87	0	115	31	30	15	23	1.95
6584741--6584955	56	3.9	56	79	11	280	31	28	11	28	1.92
6584813--6584841	14	2.1	14	100	0	58	20	41	6	31	1.79
6584723--6584937	110	2.0	110	96	0	394	30	30	11	26	1.92
6590852--6590888	18	2.1	18	89	0	56	51	21	8	18	1.72
6590858--6590896	18	2.2	18	85	0	51	51	20	5	23	1.67
6591289--6591319	7	4.4	7	95	0	53	41	19	29	9	1.83
6600496--6600520	2	12.5	2	100	0	50	52	0	0	48	1.00
6623767--6623806	2	20.0	2	100	0	80	50	0	0	50	1.00
6624580--6624609	5	6.0	5	100	0	60	40	0	0	60	0.97
6629857--6629898	3	14.0	3	94	0	75	0	35	0	64	0.94
6634852--6634890	19	2.1	19	90	9	62	66	5	7	20	1.36
6637292--6637322	15	2.0	16	93	6	55	3	25	6	64	1.33
6644574--6644611	2	19.0	2	100	0	76	0	50	0	50	1.00
6646070--6646372	157	1.9	157	87	0	437	39	4	13	41	1.66
6646379--6646403	2	12.5	2	100	0	50	52	0	0	48	1.00
6646427--6646455	2	14.5	2	100	0	58	51	0	0	48	1.00
6646376--6646470	48	2.0	47	95	4	163	48	13	4	32	1.62
6652148--6652173	6	4.3	6	100	0	52	34	30	19	15	1.93
6653324--6653350	4	6.8	4	100	0	54	0	22	0	77	0.76
6656779--6656808	15	2.0	15	93	0	51	53	0	3	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6665454--6665517	23	2.8	23	84	11	78	40	0	1	57	1.08
6665468--6665517	22	2.3	20	78	15	55	38	0	2	60	1.09
6665649--6665710	30	2.1	30	84	0	79	51	9	1	37	1.45
6670437--6670494	29	2.0	29	86	0	80	22	25	10	41	1.85
6671273--6671467	99	2.0	98	93	1	336	39	15	9	34	1.81
6673811--6673853	15	2.7	15	89	7	59	69	2	2	25	1.12
6675147--6675307	80	2.0	80	91	0	259	26	16	18	38	1.92
6676971--6677016	8	5.2	9	77	12	51	50	17	10	21	1.77
6676970--6677013	18	2.5	18	88	3	63	50	18	11	20	1.77
6679737--6679787	20	2.5	20	100	0	102	43	0	11	45	1.40
6681899--6681927	14	2.1	14	100	0	58	72	6	0	20	1.07
6682847--6682876	14	2.1	14	93	0	51	36	0	3	60	1.14
6686899--6687057	79	2.0	80	86	1	221	22	12	16	49	1.79
6692464--6692490	3	9.0	3	100	0	54	66	0	33	0	0.92
6692941--6692978	2	19.0	2	100	0	76	50	0	0	50	1.00
6699768--6699802	2	17.5	2	100	0	70	48	0	0	51	1.00
6710734--6710777	20	2.3	19	80	4	52	45	6	13	34	1.70
6723864--6723909	2	23.5	2	91	4	76	0	47	0	52	1.00
6741160--6741253	45	2.1	45	88	4	136	45	5	2	46	1.37
6741205--6741279	10	7.4	10	74	18	57	50	1	1	46	1.18
6741228--6741273	18	2.4	19	89	7	67	50	0	2	47	1.13
6741195--6741279	11	8.0	11	73	19	56	50	2	1	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6741228--6741281	18	2.9	18	81	15	65	50	0	1	48	1.11
6741669--6741695	2	13.5	2	100	0	54	51	0	48	0	1.00
6750782--6750907	65	2.0	64	100	0	243	44	11	7	35	1.69
6757001--6757043	2	22.0	2	90	4	70	51	0	0	48	1.00
6757373--6757404	8	3.9	8	95	4	55	40	0	0	59	0.97
6765712--6765744	2	16.5	2	100	0	66	48	0	51	0	1.00
6780557--6780585	14	2.1	14	93	6	51	37	0	0	62	0.96
6788479--6788556	41	1.9	41	91	0	129	30	8	12	47	1.73
6788667--6788744	40	1.9	41	84	2	104	58	5	8	26	1.49
6796225--6796286	31	2.0	31	96	0	115	40	16	14	29	1.88
6799020--6799166	76	1.9	75	87	4	215	30	15	27	25	1.96
6808128--6808184	7	8.3	7	77	11	55	77	0	0	22	0.77
6808127--6808325	13	14.1	14	66	16	99	68	0	3	28	1.04
6808127--6808205	20	4.1	19	73	15	72	73	0	1	25	0.91
6808121--6808204	33	2.6	33	85	12	104	72	0	1	26	0.92
6808127--6808256	53	2.4	52	81	10	138	69	0	3	27	1.03
6808233--6808321	28	3.2	27	79	7	90	67	0	2	30	1.03
6808151--6808321	33	5.3	31	70	19	82	67	0	3	28	1.07
6808509--6808552	15	2.9	15	72	0	52	36	18	2	43	1.63
6812249--6812293	22	2.0	22	95	0	81	28	24	22	24	1.99
6822866--6822900	18	1.9	18	88	0	52	40	0	14	45	1.45
6826013--6826050	3	12.7	3	100	0	76	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6833059--6833098	15	2.7	15	84	0	53	22	65	2	10	1.35
6833059--6833103	18	2.5	18	88	0	72	22	64	4	8	1.40
6833934--6833969	17	2.1	17	100	0	72	52	16	5	25	1.65
6836480--6836525	2	23.0	2	100	0	92	50	0	0	50	1.00
6850150--6850195	11	4.2	11	100	0	92	26	8	28	36	1.86
6856764--6856799	16	2.2	16	90	9	56	75	5	0	19	1.00
6856963--6857012	26	2.0	26	85	11	70	50	6	0	44	1.26
6867890--6867933	10	4.2	10	94	5	70	31	2	0	65	1.05
6878497--6878531	14	2.5	14	85	0	52	31	2	2	62	1.24
6884928--6884953	2	13.0	2	100	0	52	0	50	0	50	1.00
6887541--6887845	43	6.9	44	81	10	329	40	0	11	46	1.47
6887541--6887844	88	3.5	88	81	8	352	41	0	11	46	1.47
6887520--6887873	45	8.0	45	79	7	235	40	1	11	46	1.50
6887858--6887908	20	2.5	20	80	3	57	29	1	0	68	1.00
6889505--6889535	16	1.9	16	100	0	62	32	16	25	25	1.96
6898032--6898075	2	22.0	2	95	0	79	50	2	0	47	1.13
6906396--6906453	20	2.7	21	72	20	57	53	25	1	18	1.54
6911356--6911409	22	2.5	22	96	0	99	57	7	22	12	1.60
6917006--6917075	18	3.7	18	73	17	61	57	1	1	40	1.17
6917015--6917051	6	6.3	6	87	6	58	54	0	0	45	1.00
6917563--6917605	20	2.0	23	86	13	65	9	27	9	53	1.63
6930459--6930525	28	2.5	27	83	11	84	28	1	7	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6931181--6931227	21	2.3	20	85	7	60	46	0	4	48	1.21
6949214--6949241	10	2.8	10	100	0	56	21	10	17	50	1.77
6956437--6956491	10	5.4	10	73	18	51	30	1	1	65	1.13
6960308--6960337	15	2.0	15	93	0	51	50	0	3	46	1.18
6963510--6963585	37	2.1	37	97	0	143	28	7	34	28	1.85
6966539--6966629	37	2.5	35	81	13	94	19	4	1	74	1.05
6966552--6966631	27	3.0	25	82	10	79	18	3	1	76	1.01
6966579--6966677	14	6.9	14	67	22	55	19	5	2	73	1.11
6966546--6966628	12	6.7	13	70	19	52	20	4	1	73	1.08
6966579--6966651	22	3.4	22	74	12	62	19	5	1	73	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50