genome.fa.s8.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  11  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5992445--5992470	5	5.2	5	100	0	52	76	0	0	23	0.78
5992955--5993356	213	1.9	213	88	1	608	46	5	6	41	1.53
5993412--5993463	2	27.0	2	90	7	81	50	1	0	48	1.12
5993413--5993479	22	3.3	20	86	12	77	47	4	0	47	1.22
5993731--5993791	2	32.5	2	79	12	67	49	0	1	49	1.10
5995752--5995809	25	2.3	24	80	8	62	72	3	0	24	1.00
5995764--5995802	17	2.4	16	87	12	53	74	2	0	23	0.94
5995763--5995807	15	3.0	14	84	12	54	71	2	0	26	0.98
5995787--5995841	26	2.0	28	86	6	78	58	0	0	41	0.98
6016305--6016379	31	2.5	28	78	16	80	40	5	0	54	1.23
6018171--6018197	2	13.5	2	100	0	54	51	0	48	0	1.00
6027445--6027513	18	3.9	18	71	21	58	62	1	4	31	1.24
6037250--6037276	14	1.9	14	100	0	54	51	3	22	22	1.63
6045708--6045754	20	2.1	21	81	18	60	51	2	0	46	1.13
6053561--6053611	22	2.3	22	83	9	68	47	3	1	47	1.32
6054247--6054279	15	2.1	17	88	11	52	54	6	0	39	1.25
6059506--6059539	2	17.0	2	100	0	68	50	0	0	50	1.00
6062068--6062115	23	2.1	23	84	7	62	47	6	10	35	1.63
6065908--6065949	7	6.0	7	86	8	59	71	4	0	23	1.05
6088086--6088152	21	3.2	21	82	0	89	52	26	19	1	1.55
6099292--6099326	16	2.2	16	90	5	54	40	0	0	60	0.97
6099480--6099526	21	2.2	22	81	11	53	51	2	10	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6101243--6101289	18	2.7	18	86	3	60	27	2	0	70	0.99
6101243--6101292	17	2.9	17	82	5	55	30	2	0	68	1.01
6105223--6105267	20	2.2	20	80	7	56	48	0	0	51	1.00
6109357--6109401	16	2.8	16	82	3	54	46	0	0	53	1.00
6109491--6109532	22	1.9	22	85	0	57	40	0	0	59	0.97
6109719--6110126	224	1.8	220	82	9	522	42	7	3	46	1.48
6110532--6110724	96	2.0	96	98	0	377	39	16	22	21	1.92
6113762--6113880	58	2.1	58	100	0	238	42	10	8	38	1.69
6130632--6130664	2	16.5	2	100	0	66	48	0	0	51	1.00
6133413--6133550	45	3.1	45	96	0	258	26	20	27	25	1.99
6134667--6134699	17	2.0	16	94	5	57	63	0	0	36	0.95
6137190--6137251	22	2.7	23	77	5	72	48	3	0	48	1.17
6137508--6137551	21	2.0	22	82	4	54	36	2	6	54	1.40
6137869--6137905	17	2.2	17	95	0	65	54	5	0	40	1.24
6146765--6146789	13	1.9	13	100	0	50	24	0	8	68	1.16
6146768--6146809	19	2.2	20	83	8	52	35	0	4	59	1.19
6148058--6148127	2	36.0	2	90	5	108	45	0	0	52	1.00
6148347--6148438	27	3.3	27	76	13	71	32	3	0	64	1.10
6148426--6148490	32	2.0	32	85	5	87	18	10	1	69	1.26
6151022--6151058	19	1.9	19	100	0	74	45	10	16	27	1.80
6161655--6161760	38	2.7	40	82	2	126	24	40	13	21	1.89
6161876--6161909	2	17.0	2	93	0	59	50	2	0	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6162290--6162330	20	2.0	20	86	9	57	53	26	2	17	1.56
6167429--6167476	21	2.4	19	86	6	60	68	0	27	4	1.07
6168276--6168342	22	2.8	22	77	16	71	46	0	4	49	1.22
6168633--6168686	28	1.9	28	92	0	90	24	1	11	62	1.37
6172117--6172160	17	2.7	16	78	3	52	63	0	2	34	1.07
6172679--6172739	23	2.6	23	78	2	68	1	36	8	54	1.40
6173128--6173178	20	2.5	20	90	0	75	41	7	15	35	1.76
6183563--6183590	2	14.0	2	100	0	56	0	50	0	50	1.00
6185493--6185528	3	11.7	3	88	5	54	33	2	0	63	1.08
6186579--6186608	2	15.0	2	92	0	51	50	3	0	46	1.18
6186986--6187027	13	3.3	13	80	6	50	23	2	9	64	1.35
6188151--6188181	15	2.0	16	93	6	55	45	3	0	51	1.17
6188609--6188658	27	1.9	25	88	8	73	38	0	0	62	0.96
6190054--6190147	10	9.2	10	71	23	54	64	1	31	2	1.12
6190078--6190142	21	3.3	21	77	10	75	67	0	30	1	1.00
6190037--6190145	42	2.6	44	74	18	106	66	0	30	1	1.08
6207797--6207836	21	1.9	21	89	0	62	40	15	5	40	1.68
6208758--6208799	19	2.2	19	95	0	75	50	0	16	33	1.46
6210452--6210481	2	15.0	2	100	0	60	50	0	0	50	1.00
6211725--6211754	3	10.0	3	92	0	51	36	63	0	0	0.95
6218080--6218121	17	2.5	17	80	7	50	33	4	2	59	1.31
6219290--6219316	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6222261--6222506	35	7.1	34	77	8	235	18	15	41	24	1.89
6222277--6222600	34	9.4	34	78	7	244	18	16	41	23	1.90
6222261--6222541	70	4.0	69	80	8	288	19	15	41	23	1.90
6222261--6222575	104	3.0	101	79	10	309	19	15	41	23	1.89
6240608--6240636	2	14.5	2	100	0	58	0	48	0	51	1.00
6243081--6243106	11	2.4	11	100	0	52	65	7	26	0	1.20
6251855--6251885	14	2.2	14	100	0	62	32	25	16	25	1.96
6286768--6287155	203	1.9	203	91	1	643	52	10	7	29	1.64
6287420--6287458	20	1.9	21	94	5	71	66	5	7	20	1.36
6289561--6289607	22	2.1	22	96	0	85	40	0	34	25	1.56
6292677--6293054	191	2.0	190	92	2	625	41	11	6	41	1.66
6294451--6294500	25	2.0	25	96	0	91	50	0	2	48	1.12
6325915--6325982	34	2.0	34	97	0	127	35	8	13	42	1.75
6326960--6327048	44	2.0	44	97	2	171	31	0	17	50	1.47
6328612--6328873	131	2.0	130	99	0	515	35	12	13	38	1.82
6329800--6329843	2	22.0	2	100	0	88	50	0	0	50	1.00
6337877--6337944	18	3.8	18	86	0	82	7	39	0	52	1.29
6337877--6337929	6	8.8	6	95	0	79	9	35	0	54	1.33
6337889--6337941	12	4.4	12	92	0	52	9	41	0	49	1.35
6349909--6349941	2	16.5	2	100	0	66	51	0	48	0	1.00
6350996--6351057	30	2.1	29	82	8	72	35	9	0	54	1.33
6356888--6356930	22	2.0	22	81	9	52	62	6	18	11	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6366554--6366639	43	2.0	44	93	2	147	41	17	11	29	1.84
6371365--6371496	65	2.0	65	100	0	264	40	13	13	32	1.84
6372156--6372193	2	19.5	2	94	5	69	50	0	0	50	1.00
6373392--6373462	27	2.6	29	73	15	78	43	12	4	39	1.62
6377869--6377899	2	15.5	2	100	0	62	51	0	0	48	1.00
6383652--6383691	18	2.2	19	86	4	55	82	7	10	0	0.84
6384341--6384373	6	5.3	6	96	3	57	15	0	15	69	1.19
6393788--6393828	22	1.9	21	90	5	64	53	4	17	24	1.63
6398688--6398712	13	1.9	13	100	0	50	48	0	32	20	1.50
6398945--6398998	17	3.5	17	73	23	55	42	11	27	18	1.84
6398938--6398994	29	2.0	29	92	0	96	43	10	28	17	1.82
6398938--6399013	29	2.6	29	85	4	82	46	9	26	18	1.79
6399297--6399373	35	2.2	35	90	0	118	16	19	20	42	1.89
6407390--6407464	36	2.1	36	89	0	114	32	16	24	28	1.96
6414270--6414298	2	14.5	2	100	0	58	51	0	0	48	1.00
6418022--6418100	31	2.6	30	76	7	88	62	3	6	27	1.37
6418564--6418617	19	2.8	19	75	11	56	24	1	1	72	1.05
6418564--6418601	18	2.1	19	85	5	51	21	0	2	76	0.91
6419231--6419272	17	2.4	17	88	8	57	33	2	0	64	1.07
6442382--6442487	53	2.0	53	100	0	212	28	9	26	35	1.87
6447628--6448267	210	3.0	217	83	4	846	41	8	5	45	1.55
6450184--6450262	26	3.0	26	96	0	149	35	5	30	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6465519--6465581	28	2.2	30	86	11	87	55	0	0	44	0.99
6465519--6465596	30	2.5	30	80	15	88	55	0	0	44	0.99
6468899--6468951	16	3.3	15	78	19	54	62	0	1	35	1.06
6469128--6469167	15	2.7	15	84	0	53	37	22	2	37	1.68
6474408--6474502	48	2.0	48	91	4	156	28	30	10	30	1.90
6480966--6481001	2	18.0	2	100	0	72	50	0	50	0	1.00
6492559--6492809	138	1.8	138	83	5	337	37	19	22	21	1.95
6497204--6497240	18	2.1	18	100	0	74	24	27	10	37	1.88
6506805--6506863	24	2.5	22	76	15	55	40	6	8	44	1.61
6506818--6506890	26	2.9	25	82	6	85	36	4	9	49	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50