genome.fa.s8.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  6  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3139759--3139811	2	26.5	2	100	0	106	49	0	50	0	1.00
3144254--3144292	4	9.8	4	100	0	78	25	0	23	51	1.49
3160557--3160593	19	2.0	18	94	0	56	62	13	0	21	1.29
3160589--3160632	2	22.0	2	100	0	88	50	0	0	50	1.00
3169721--3169769	15	3.3	14	80	11	53	61	0	0	38	0.96
3169722--3169758	15	2.4	16	86	9	58	64	0	0	35	0.94
3173556--3173587	15	2.1	15	94	0	55	18	31	6	43	1.75
3173564--3173603	12	2.9	15	75	21	50	20	32	12	35	1.90
3174725--3174762	19	2.0	19	85	10	51	42	5	0	52	1.24
3193041--3193090	3	17.0	3	79	4	57	60	2	38	0	1.09
3194838--3194874	2	18.5	2	100	0	74	48	0	51	0	1.00
3203093--3203151	30	2.0	30	96	0	109	35	23	23	16	1.95
3216818--3217001	92	2.0	92	87	2	262	38	15	9	36	1.79
3217829--3217870	21	2.0	21	90	0	66	28	50	0	21	1.49
3222968--3223002	2	18.0	2	94	5	63	48	0	0	51	1.00
3238236--3238270	3	12.0	3	93	6	63	65	0	34	0	0.93
3239448--3239476	2	14.5	2	100	0	58	48	0	0	51	1.00
3244745--3244775	15	2.1	15	93	0	53	22	12	19	45	1.84
3252822--3252904	43	1.9	43	95	0	148	43	22	20	13	1.86
3255218--3255247	16	1.9	16	93	6	53	30	0	6	63	1.20
3256290--3256348	21	2.7	22	74	7	59	42	11	10	35	1.76
3261616--3261641	5	5.2	5	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3277733--3277816	44	2.0	43	88	9	127	55	15	15	13	1.69
3286293--3286331	19	2.1	19	100	0	78	10	10	23	56	1.63
3286293--3286343	9	5.4	10	77	11	54	7	11	23	56	1.61
3286298--3286339	19	2.2	19	91	0	66	9	14	23	52	1.71
3286997--3287062	26	2.6	26	83	4	73	54	7	27	10	1.61
3287184--3287251	34	2.0	34	100	0	136	44	11	2	41	1.56
3305077--3305104	2	14.0	2	100	0	56	50	0	0	50	1.00
3307995--3308035	22	2.0	22	90	9	68	73	7	0	19	1.07
3311305--3311826	264	2.0	266	83	4	660	26	36	13	24	1.92
3315108--3315173	30	2.1	33	83	8	84	28	10	16	43	1.81
3315162--3315216	26	2.1	26	93	0	92	38	5	10	45	1.63
3313347--3316887	657	5.4	659	81	6	3553	32	9	18	39	1.83
3316421--3317127	295	2.4	295	83	4	865	32	8	17	40	1.81
3330499--3330606	51	2.1	51	98	0	207	23	25	18	32	1.97
3346621--3346798	42	4.2	42	77	7	155	25	14	30	29	1.94
3358130--3358191	21	3.0	21	80	13	67	64	4	0	30	1.14
3359509--3359557	16	3.2	16	72	21	59	55	4	0	40	1.19
3359509--3359573	30	2.3	30	86	7	91	55	6	0	38	1.25
3360092--3360151	25	2.4	25	88	0	84	45	15	13	26	1.83
3360606--3360645	19	2.2	18	86	4	53	52	5	0	42	1.23
3369701--3369793	29	3.2	28	79	8	80	35	9	15	39	1.80
3369714--3369793	29	2.7	30	82	3	90	33	10	13	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3369827--3369882	21	2.7	21	83	10	87	44	25	10	19	1.83
3397863--3398007	71	2.0	71	94	0	254	41	16	15	26	1.88
3404001--3404086	37	2.3	37	75	16	88	55	0	0	44	0.99
3406455--3406485	2	15.5	2	93	0	53	51	3	0	45	1.17
3407409--3407448	20	2.0	20	85	0	53	25	10	7	57	1.57
3408406--3408433	2	14.0	2	100	0	56	50	0	0	50	1.00
3435238--3435415	89	2.0	89	100	0	356	20	16	15	47	1.83
3462470--3462539	34	2.1	34	97	0	131	25	20	12	41	1.88
3470203--3470738	274	2.0	273	99	0	1063	41	20	14	23	1.89
3479463--3479489	6	4.5	6	100	0	54	0	14	0	85	0.61
3507391--3507428	15	2.5	15	91	0	58	34	31	2	31	1.72
3516432--3516466	17	2.2	15	90	10	52	11	0	88	0	0.51
3516432--3516463	6	5.7	6	92	7	50	12	0	87	0	0.54
3518099--3518132	17	2.1	16	88	5	50	55	0	0	44	0.99
3521122--3521190	30	2.3	30	87	0	93	31	8	5	53	1.55
3521970--3522021	17	3.1	17	75	5	61	65	0	3	30	1.10
3522287--3522352	30	2.3	30	84	10	84	33	4	1	60	1.26
3522690--3522752	24	2.8	22	79	11	74	49	1	0	49	1.10
3533190--3533217	1	28.0	1	100	0	56	0	0	100	0	0.00
3572110--3572154	21	2.0	23	87	8	67	48	6	0	44	1.29
3577046--3577071	2	13.0	2	100	0	52	50	0	0	50	1.00
3579264--3579323	28	2.1	28	90	0	93	35	25	15	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3589910--3589937	2	14.0	2	100	0	56	50	0	0	50	1.00
3594530--3594596	2	32.0	2	92	3	98	47	2	1	46	1.27
3606230--3606328	50	2.0	50	93	0	171	48	14	15	22	1.80
3614278--3614305	13	2.2	13	100	0	56	25	7	25	42	1.80
3615776--3615818	6	7.3	6	94	5	79	67	16	16	0	1.24
3615777--3615826	23	2.1	25	85	10	70	64	14	20	2	1.39
3619135--3619174	15	2.7	15	88	3	55	22	12	30	35	1.91
3632842--3632903	30	2.1	30	87	6	90	54	6	6	32	1.51
3668293--3668484	97	2.0	95	98	1	366	46	5	20	26	1.71
3668645--3668705	28	2.2	28	87	0	86	29	0	8	62	1.24
3671871--3671926	14	4.1	14	74	4	51	35	0	5	58	1.21
3701701--3701729	2	15.0	2	92	7	51	48	0	0	51	1.00
3704983--3705017	11	3.1	11	91	4	52	62	0	2	34	1.10
3734968--3735009	2	21.0	2	100	0	84	50	0	0	50	1.00
3738793--3738829	19	2.0	18	89	5	56	56	5	0	37	1.22
3740728--3740752	3	8.3	3	100	0	50	32	0	0	68	0.90
3765899--3765934	14	2.6	14	90	0	54	8	19	36	36	1.82
3765970--3765999	2	15.0	2	92	0	51	53	0	46	0	1.00
3778059--3778122	32	2.0	33	81	9	78	54	9	3	32	1.48
3786847--3786889	16	2.5	18	77	14	54	46	0	0	53	1.00
3786836--3786897	23	2.7	24	73	21	60	51	0	0	48	1.00
3800057--3800097	2	21.0	2	95	5	75	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3805496--3805523	3	9.3	3	100	0	56	35	0	32	32	1.58
3816965--3817028	18	3.9	16	71	17	60	46	0	1	51	1.10
3817325--3817384	28	2.1	28	87	6	86	26	1	8	63	1.32
3825990--3826079	23	3.7	23	78	14	65	46	2	1	50	1.21
3826031--3826091	31	1.9	32	83	9	81	44	1	1	52	1.20
3826048--3826093	16	2.9	16	78	15	51	43	0	0	56	0.99
3826167--3826214	25	1.9	25	86	0	69	52	4	2	41	1.32
3826413--3826455	5	8.4	5	85	14	61	18	0	0	81	0.69
3826413--3826455	16	2.8	16	96	3	79	18	0	0	81	0.69
3836212--3836248	2	18.5	2	100	0	74	48	0	0	51	1.00
3846609--3846643	6	6.0	6	86	6	54	62	0	0	37	0.95
3868562--3868594	2	17.0	2	93	6	59	51	0	0	48	1.00
3869899--3869949	24	2.1	24	85	0	66	41	19	17	21	1.91
3869842--3870063	69	3.2	69	81	2	266	36	18	18	25	1.94
3869967--3870014	24	2.0	24	95	0	87	47	16	16	18	1.82
3870102--3870175	26	2.9	25	80	9	78	41	16	13	28	1.86
3870102--3870207	32	3.9	26	73	19	83	43	14	12	30	1.81
3870090--3870247	29	5.7	28	78	15	107	42	14	11	31	1.81
3870070--3870247	29	6.3	27	76	16	98	41	14	11	32	1.82
3879685--3879780	2	48.0	2	76	10	72	44	6	1	46	1.35
3889157--3889191	18	1.9	18	88	11	54	51	8	28	11	1.67
3889679--3889827	45	3.3	45	84	0	190	33	20	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3889891--3889950	29	2.1	29	81	6	68	40	15	6	38	1.73
3908398--3908432	16	2.1	16	89	10	52	11	0	8	80	0.92
3914028--3914061	17	1.9	18	88	5	52	32	0	0	67	0.91
3914075--3914121	22	2.2	20	85	7	58	53	0	0	46	1.00
3914255--3914281	14	1.9	14	100	0	54	40	0	7	51	1.30
3931194--3931235	3	14.3	3	80	5	50	0	35	4	59	1.19
3933394--3933440	22	2.2	22	84	3	60	63	2	0	34	1.06
3946251--3946280	2	15.0	2	100	0	60	50	0	0	50	1.00
3946312--3946348	2	18.0	2	94	5	65	48	0	2	48	1.15
3950176--3950227	27	2.0	25	85	7	68	55	0	3	40	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50