genome.fa.s8.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  23  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10456364--10456758	150	2.7	149	85	4	473	25	8	18	46	1.77
10458447--10458569	43	2.8	43	84	9	158	57	1	14	26	1.47
10458447--10458549	43	2.4	44	88	6	165	57	1	15	25	1.49
10458608--10458645	20	1.9	20	89	10	60	52	0	5	42	1.24
10460184--10460243	30	2.1	29	81	6	68	31	8	21	38	1.83
10464442--10464480	2	19.0	2	87	10	53	48	2	2	46	1.29
10464954--10464988	2	17.5	2	100	0	70	48	0	0	51	1.00
10467502--10467550	18	2.7	18	81	12	64	38	8	10	42	1.68
10468129--10468279	36	4.2	36	75	10	121	32	23	13	30	1.93
10468217--10468293	36	2.2	36	83	6	95	35	23	10	31	1.88
10469442--10469484	3	14.3	3	100	0	86	67	0	0	32	0.91
10469734--10469770	17	2.1	18	90	5	58	59	16	0	24	1.37
10480653--10480741	44	2.0	44	100	0	178	42	17	8	30	1.80
10482859--10483013	76	2.0	76	94	0	274	40	12	14	31	1.84
10483553--10483591	8	5.1	7	85	14	51	15	2	15	66	1.36
10483553--10483591	15	2.5	15	88	12	53	15	2	15	66	1.36
10485699--10485742	19	2.2	19	84	15	54	34	2	2	61	1.21
10490614--10490722	51	2.1	51	94	0	191	53	6	2	37	1.41
10491154--10491215	30	2.1	30	87	0	88	30	9	11	48	1.71
10493060--10493099	21	1.9	21	89	0	62	50	2	5	42	1.37
10495309--10495343	17	2.1	17	88	0	52	71	0	0	28	0.86
10495410--10495505	42	2.3	42	83	3	113	46	2	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10495397--10495791	156	2.5	160	86	3	541	42	3	2	51	1.31
10495658--10495822	31	5.5	31	66	22	82	36	3	2	57	1.27
10495751--10495784	15	2.3	15	89	0	50	38	0	2	58	1.13
10495646--10495915	119	2.3	119	86	5	388	38	2	2	55	1.27
10495873--10495932	25	2.3	26	88	2	95	45	0	0	55	0.99
10496554--10496587	2	18.0	2	88	11	54	47	0	0	52	1.00
10496557--10496595	12	3.1	12	88	7	51	41	0	0	58	0.98
10512891--10512919	14	2.1	14	93	6	51	55	0	0	44	0.99
10522683--10522720	19	2.0	19	100	0	76	42	31	0	26	1.56
10524722--10524788	20	3.5	18	77	8	62	53	2	0	43	1.16
10524722--10524794	38	1.9	38	91	0	119	56	2	0	41	1.14
10524825--10524867	15	2.6	16	82	10	52	48	2	0	48	1.14
10525342--10525380	18	2.2	19	86	9	55	30	5	2	61	1.31
10525492--10525539	21	2.3	21	85	0	60	45	2	0	52	1.12
10527169--10527207	11	3.5	11	85	0	51	79	0	12	7	0.93
10532959--10533032	38	1.9	38	94	0	130	40	8	20	31	1.81
10536407--10536519	35	3.2	35	80	5	122	42	22	15	20	1.88
10537035--10537101	35	1.9	35	87	6	100	23	19	19	37	1.94
10537051--10537119	35	2.0	35	82	2	86	26	20	17	36	1.94
10540336--10540398	2	31.0	2	87	9	92	50	1	0	46	1.11
10548466--10548500	17	2.1	17	88	0	52	45	8	14	31	1.75
10550999--10551056	21	2.8	19	78	19	55	65	0	3	31	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10551765--10551801	13	2.6	14	91	8	58	75	0	24	0	0.80
10552446--10552519	19	3.8	20	71	16	57	22	1	14	60	1.42
10553630--10553670	16	2.5	17	80	15	50	29	0	9	60	1.28
10555234--10555312	22	3.7	22	69	20	60	72	0	25	2	0.98
10555232--10555288	29	2.0	29	82	6	71	68	0	29	1	1.00
10555236--10555314	19	4.3	18	73	16	63	72	0	25	2	0.98
10555240--10555308	14	5.2	13	70	13	50	71	0	26	2	1.00
10555273--10555314	18	2.3	19	83	4	59	76	0	21	2	0.90
10561330--10563385	250	8.3	250	82	6	2208	33	10	7	48	1.65
10561330--10563384	737	2.8	742	82	5	2410	33	10	7	48	1.64
10561471--10563854	486	4.9	487	80	9	2269	34	10	7	48	1.65
10563076--10563121	20	2.4	19	86	13	60	39	6	8	45	1.61
10563217--10563571	187	1.9	184	84	2	478	35	10	8	46	1.68
10563401--10563879	252	1.9	252	88	3	723	34	10	7	46	1.68
10563875--10563909	3	11.7	3	93	0	61	62	0	0	37	0.95
10564697--10564751	26	2.2	25	87	6	76	50	9	14	25	1.72
10564733--10564926	102	1.9	102	96	0	361	47	16	13	21	1.81
10564904--10564942	16	2.4	16	91	0	60	43	12	7	35	1.72
10564904--10564944	18	2.3	18	91	0	64	43	12	7	36	1.70
10568197--10568225	14	2.1	14	93	6	51	37	0	0	62	0.96
10576567--10576850	143	2.0	143	90	2	455	31	19	16	32	1.94
10578208--10578235	5	5.6	5	100	0	56	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10581558--10581762	81	2.5	81	83	1	232	23	11	28	36	1.89
10585590--10585646	21	2.8	20	72	5	51	29	15	7	47	1.72
10588222--10588586	22	16.7	22	72	10	140	21	11	25	41	1.87
10588355--10588520	44	3.8	44	85	1	197	16	10	28	43	1.82
10588355--10588558	67	3.1	68	84	4	236	18	11	27	42	1.84
10597365--10597411	21	2.3	20	81	3	58	63	0	10	25	1.26
10597384--10597425	17	2.4	18	84	7	52	61	2	7	28	1.35
10609072--10609135	22	2.8	22	83	11	76	82	1	14	1	0.81
10609067--10609138	17	4.2	17	78	8	67	83	1	13	1	0.79
10609070--10609145	38	2.1	34	86	11	100	81	1	15	1	0.82
10609628--10609681	28	2.0	27	88	3	81	31	18	20	29	1.96
10614726--10614777	28	1.9	27	84	7	70	26	21	21	30	1.98
10614823--10614868	20	2.3	20	96	0	83	45	21	4	28	1.71
10615924--10616335	59	7.0	58	76	9	200	33	13	16	36	1.87
10616080--10616335	59	4.3	58	80	7	257	34	13	15	37	1.86
10615922--10616312	118	3.3	118	77	7	382	33	13	16	36	1.88
10615922--10616335	177	2.4	174	81	6	480	33	13	16	36	1.87
10621384--10621434	22	2.3	22	86	0	66	27	19	23	29	1.98
10621502--10621565	27	2.4	27	81	0	83	25	25	18	31	1.98
10622775--10622831	27	2.1	27	100	0	114	38	24	17	19	1.93
10625943--10625988	20	2.3	20	88	7	67	32	4	17	45	1.68
10626033--10626085	28	1.9	27	88	3	79	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10626033--10626091	28	2.1	28	84	6	75	30	20	23	25	1.98
10682103--10682144	19	2.1	19	86	8	57	42	28	4	23	1.74
10692574--10692605	10	3.0	11	90	9	57	43	18	9	28	1.81
10692825--10692888	25	2.5	24	80	14	67	37	1	3	57	1.24
10692983--10693021	18	2.2	18	90	0	60	33	5	15	46	1.68
10697176--10697210	12	2.8	13	86	8	54	62	0	37	0	0.95
10697299--10697329	7	4.4	7	91	0	53	70	0	25	3	1.02
10697308--10697454	61	2.4	60	76	14	138	53	6	38	2	1.39
10698191--10698365	60	2.9	60	89	1	253	24	20	32	23	1.98
10710421--10710455	12	2.8	13	86	8	54	62	0	37	0	0.95
10711406--10711587	60	3.0	59	88	1	247	25	18	32	23	1.97
10712457--10712545	2	42.5	2	89	8	133	3	46	0	49	1.18
10717221--10717297	21	3.7	21	85	0	91	24	15	16	42	1.87
10717239--10717309	21	3.3	21	88	2	79	26	15	16	40	1.89
10722075--10722130	25	2.2	25	79	20	64	33	19	7	39	1.79
10723002--10723053	22	2.3	23	83	3	61	48	15	5	30	1.68
10725450--10725495	20	2.3	20	96	0	83	28	4	21	45	1.71
10725541--10725598	28	2.1	27	81	12	73	31	24	22	22	1.99
10739843--10739893	2	25.5	2	91	0	84	49	0	3	47	1.20
10740146--10740193	2	24.0	2	100	0	96	50	0	0	50	1.00
10741231--10741270	18	2.2	19	86	4	55	77	2	0	20	0.88
10743070--10743111	22	1.9	22	95	0	75	28	11	19	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10743124--10743209	22	4.0	22	81	3	102	23	11	24	40	1.87
10743216--10743299	23	3.7	23	87	3	107	34	28	14	22	1.93
10743285--10743341	21	2.7	21	91	0	96	31	24	19	24	1.98
10743328--10743371	22	2.0	23	86	4	63	43	20	11	25	1.85
10750855--10750894	20	2.0	20	90	0	62	27	25	15	32	1.95
10754535--10754579	16	2.9	15	81	18	56	73	4	11	11	1.23
10759332--10759368	19	1.9	19	88	0	56	16	24	10	48	1.77
10777827--10777880	21	2.6	21	76	5	56	42	9	12	35	1.75
10782906--10782951	19	2.4	20	82	10	60	54	0	2	43	1.12
10783354--10783391	20	1.9	20	100	0	76	28	5	21	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50