genome.fa.s8.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  7  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3950309--3950345	11	3.5	11	78	14	51	40	2	0	56	1.13
3954771--3956258	744	2.0	743	95	0	2645	36	11	13	39	1.81
3959587--3959629	2	22.0	2	86	13	63	48	2	48	0	1.14
3971229--3971266	2	19.0	2	100	0	76	50	0	0	50	1.00
3972256--3972323	2	35.0	2	85	11	97	52	0	1	45	1.09
3972256--3972323	13	5.0	14	86	12	97	52	0	1	45	1.09
3972256--3972323	17	4.1	17	90	5	113	52	0	1	45	1.09
3972819--3972856	2	19.0	2	100	0	76	50	0	0	50	1.00
3973601--3973657	21	2.6	22	80	5	80	21	10	22	45	1.82
3973601--3973679	22	3.7	21	77	6	70	24	11	18	45	1.82
3973698--3973875	26	7.5	24	71	15	111	35	24	14	25	1.93
3973698--3973796	23	4.2	24	78	13	100	33	27	15	24	1.95
3973780--3973991	26	8.7	26	64	14	112	39	23	14	23	1.91
3973779--3973944	73	2.3	73	84	2	208	39	22	14	23	1.91
3973858--3974013	47	3.3	47	100	0	312	37	26	15	21	1.93
3973952--3974095	69	2.1	69	81	2	164	40	24	12	22	1.89
3987825--3987863	21	1.9	21	84	5	53	10	20	10	58	1.59
3989366--3989508	70	2.0	69	92	5	234	55	5	4	32	1.44
3989849--3989897	15	3.1	16	81	16	57	67	0	4	28	1.09
3991603--3991627	2	12.5	2	100	0	50	48	0	0	52	1.00
3991719--3991764	24	1.9	24	90	0	74	32	4	15	47	1.65
4007124--4007161	9	4.3	9	90	6	60	13	0	0	86	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4007125--4007161	17	2.2	17	95	0	65	13	0	0	86	0.57
4007123--4007171	22	2.3	21	86	6	71	14	0	0	85	0.59
4007122--4007176	10	5.4	10	76	20	51	18	0	0	81	0.68
4009048--4009108	21	2.8	22	82	5	88	21	13	22	42	1.87
4009114--4009247	23	5.7	23	84	7	155	35	27	11	25	1.91
4009114--4009251	46	3.0	46	81	7	172	35	27	11	25	1.91
4009133--4009263	23	5.4	26	87	6	129	37	28	10	23	1.88
4009267--4009368	21	4.6	21	73	11	78	35	24	16	23	1.95
4009487--4009617	51	2.6	50	77	9	149	39	19	6	35	1.76
4012244--4012282	9	4.3	9	90	0	60	41	20	10	28	1.85
4012244--4012282	18	2.2	18	100	0	78	41	20	10	28	1.85
4012934--4013072	63	2.2	61	78	7	170	40	20	12	26	1.87
4013129--4013179	20	2.5	21	84	9	61	66	3	0	29	1.09
4013158--4013198	15	2.7	15	84	3	55	60	4	0	34	1.18
4013371--4013402	10	3.1	10	91	8	55	28	9	18	43	1.81
4013371--4013402	11	3.0	11	95	4	57	28	9	18	43	1.81
4015976--4016093	61	1.9	63	84	3	159	36	7	2	53	1.43
4015976--4016093	62	1.9	62	84	3	157	36	7	2	53	1.43
4016919--4016947	15	1.9	15	100	0	58	34	6	0	58	1.25
4016984--4017049	32	2.1	32	88	0	96	28	24	12	34	1.91
4026565--4026592	2	14.0	2	100	0	56	0	50	0	50	1.00
4029912--4029945	17	2.0	17	94	0	59	50	17	5	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4032127--4032269	45	3.2	45	64	9	119	38	25	12	23	1.90
4032138--4032279	46	3.2	44	64	9	115	37	23	12	26	1.91
4032126--4032311	91	2.0	91	94	0	327	37	27	11	23	1.90
4046336--4046406	2	35.5	2	94	0	124	49	0	1	47	1.10
4054971--4055122	54	2.8	53	80	4	153	25	21	36	16	1.94
4054979--4055123	27	5.4	27	76	3	130	25	22	35	16	1.95
4055751--4055838	43	2.0	43	100	0	176	38	39	2	19	1.64
4058330--4058367	18	2.1	18	85	9	51	36	10	0	52	1.36
4061182--4061206	7	3.6	7	100	0	50	0	12	0	88	0.53
4064029--4064143	2	59.0	2	85	8	130	48	0	0	45	1.14
4069898--4069938	11	3.5	12	80	12	50	14	0	9	75	1.04
4078925--4078978	2	27.0	2	96	0	99	0	51	0	48	1.00
4086343--4086402	23	2.5	25	73	13	63	1	16	5	76	1.04
4086347--4086404	24	2.5	23	78	15	66	1	17	5	75	1.06
4099790--4099955	55	3.0	55	100	0	332	28	14	31	25	1.95
4107548--4107579	12	2.7	12	95	0	55	0	43	3	53	1.16
4110141--4110191	21	2.4	21	90	3	84	7	5	37	49	1.56
4137336--4137374	20	2.0	20	94	0	69	10	7	43	38	1.67
4144290--4144335	18	2.5	17	83	13	56	43	2	4	50	1.34
4144304--4144346	20	2.1	21	86	4	61	44	2	4	48	1.36
4157875--4157923	26	1.9	25	84	12	64	59	2	38	0	1.09
4170386--4170413	13	2.2	13	100	0	56	21	28	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4175930--4175975	18	2.6	18	85	0	65	23	8	19	47	1.77
4175930--4175982	18	2.9	18	76	15	56	24	9	20	45	1.81
4178247--4178498	63	4.0	63	94	1	427	36	19	19	24	1.95
4185629--4185673	20	2.2	20	100	0	90	57	15	15	11	1.64
4192616--4192665	25	2.0	26	92	4	84	56	0	2	42	1.11
4192841--4192878	16	2.4	16	100	0	76	50	5	0	44	1.24
4192869--4192930	24	2.4	27	92	7	103	51	1	0	46	1.10
4192873--4192918	12	3.9	11	81	13	56	52	2	0	45	1.13
4192869--4192938	24	2.8	25	85	12	76	54	1	0	44	1.09
4194882--4194909	14	2.0	14	100	0	56	28	7	28	35	1.84
4223491--4223528	19	1.9	20	89	10	60	52	5	0	42	1.24
4223521--4223575	28	1.9	29	85	3	76	38	0	0	61	0.96
4223821--4223924	30	3.6	29	83	5	129	54	0	1	43	1.11
4228794--4228862	34	2.0	34	85	2	93	44	5	18	30	1.73
4230427--4230517	45	2.0	45	97	0	173	25	19	26	28	1.99
4236618--4236665	24	2.0	24	95	0	87	27	16	16	39	1.90
4257802--4257869	33	2.1	33	100	0	136	48	20	10	20	1.78
4258108--4258137	6	5.0	6	100	0	60	0	33	33	33	1.58
4268789--4268872	36	2.3	36	100	0	168	19	36	16	27	1.93
4270833--4270864	16	2.0	16	100	0	64	12	12	43	31	1.80
4272152--4272234	33	2.5	33	88	0	130	48	16	25	9	1.77
4272320--4272378	30	2.0	30	89	0	91	1	22	0	76	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4272332--4272378	15	3.1	15	75	22	53	0	21	0	78	0.75
4272332--4272381	14	3.4	14	76	10	55	0	22	0	78	0.76
4272360--4272432	38	1.9	38	91	5	121	4	31	6	57	1.44
4272572--4272621	21	2.3	23	76	16	61	68	4	26	2	1.18
4273750--4273788	15	2.6	15	100	0	78	58	12	7	20	1.58
4281237--4281483	109	2.3	110	86	2	336	53	3	3	40	1.33
4281374--4281436	27	2.5	25	80	14	60	55	1	4	38	1.31
4282803--4282876	37	2.0	37	94	0	130	43	10	21	24	1.84
4283697--4283861	54	3.1	54	81	3	199	41	14	13	30	1.85
4285501--4285618	61	1.9	61	89	3	184	36	9	12	41	1.75
4285920--4285949	14	2.2	13	94	5	51	53	0	6	40	1.27
4286006--4286060	27	2.1	26	89	3	83	45	14	7	32	1.72
4286366--4286410	24	2.0	23	83	12	58	46	13	11	28	1.77
4294380--4294421	17	2.6	16	82	14	50	0	28	4	66	1.12
4314740--4314806	32	2.1	32	100	0	134	38	2	2	55	1.31
4343479--4343543	30	2.2	28	84	7	85	41	1	0	56	1.08
4343484--4343554	36	1.9	37	83	8	92	42	4	0	53	1.20
4375176--4375214	19	2.1	19	95	0	69	53	10	17	17	1.71
4377286--4377335	21	2.4	21	96	3	93	20	18	36	26	1.95
4383884--4383972	14	6.4	14	74	10	74	48	13	2	35	1.55
4383906--4383981	2	38.0	2	78	0	71	47	9	2	40	1.49
4383884--4383980	18	5.5	18	72	4	90	48	12	2	37	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4383884--4383978	8	11.6	8	76	4	82	48	12	2	36	1.53
4394397--4394435	2	19.5	2	100	0	78	48	0	0	51	1.00
4402662--4402725	30	2.1	30	88	0	92	18	31	10	39	1.86
4405344--4405375	1	32.0	1	93	0	55	3	0	96	0	0.20
4407561--4407593	15	2.1	16	94	5	59	69	0	0	30	0.88
4415116--4415186	7	10.4	7	75	13	51	42	11	2	43	1.55
4415136--4415186	14	3.8	14	84	5	61	45	5	3	45	1.46
4415134--4415186	13	3.9	14	82	7	65	43	7	3	45	1.50
4430782--4430821	12	3.3	12	89	0	62	20	40	37	2	1.66
4443909--4443946	2	19.0	2	94	0	67	50	47	0	2	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50