genome.fa.s8.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  8  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4484493--4484520	2	14.0	2	100	0	56	50	0	0	50	1.00
4490300--4490357	30	1.9	30	96	0	107	25	56	10	6	1.57
4493043--4493079	17	2.4	16	86	13	51	37	0	2	59	1.12
4502819--4502934	53	2.2	53	85	4	162	42	16	16	25	1.88
4503081--4503149	26	2.7	26	82	6	79	42	7	15	34	1.75
4503177--4503220	18	2.4	18	80	0	52	36	20	20	22	1.95
4503293--4503330	19	2.1	19	90	5	60	39	23	21	15	1.92
4510056--4510111	17	3.2	17	79	5	58	32	1	0	66	1.03
4510036--4510130	50	1.9	50	84	4	129	36	3	0	60	1.13
4515971--4515996	7	3.7	7	100	0	52	88	0	11	0	0.52
4522737--4522774	15	2.4	16	82	4	51	65	0	0	34	0.93
4527576--4527607	15	2.2	14	94	5	55	53	0	0	46	1.00
4550813--4550879	29	2.3	30	79	10	75	50	1	10	37	1.46
4571726--4571757	2	16.0	2	93	0	55	46	0	3	50	1.17
4573907--4574068	80	2.0	80	90	0	252	38	15	17	29	1.90
4579004--4579108	45	2.4	45	84	9	130	46	0	6	45	1.35
4579004--4579122	45	2.8	44	81	8	115	47	0	6	44	1.35
4579985--4580015	15	2.0	16	93	6	55	38	6	0	54	1.26
4580393--4580430	2	19.0	2	100	0	76	50	0	0	50	1.00
4582129--4582335	104	2.0	106	88	3	312	34	9	13	42	1.77
4584931--4584981	22	2.3	22	89	0	75	29	5	15	49	1.68
4609649--4610107	252	1.8	252	90	2	665	40	7	10	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4615988--4616012	5	5.0	5	100	0	50	60	0	0	40	0.97
4627264--4627494	107	2.1	111	82	7	278	33	9	10	45	1.72
4627377--4627434	26	2.2	26	81	0	71	31	8	12	48	1.70
4627404--4627465	30	2.1	29	84	3	79	30	9	9	50	1.67
4627430--4627494	27	2.4	27	92	0	103	29	10	9	50	1.68
4627883--4628157	28	10.0	27	80	2	228	40	13	8	36	1.76
4627883--4628155	55	5.0	55	78	2	271	41	13	8	36	1.75
4627883--4628244	82	4.4	82	78	3	287	40	12	8	37	1.75
4627883--4628202	55	5.8	54	78	2	237	40	13	8	37	1.74
4627883--4628263	27	13.9	27	79	2	242	40	13	8	37	1.75
4628253--4628301	25	2.0	24	84	4	62	42	8	8	40	1.64
4637845--4637899	18	3.1	18	78	7	67	49	7	3	40	1.48
4645755--4645800	23	2.0	23	91	0	74	39	10	10	39	1.76
4648696--4648825	65	2.0	66	92	3	219	19	19	16	44	1.87
4651042--4651087	13	3.4	13	90	6	65	30	6	2	60	1.34
4651253--4651407	3	50.3	3	74	19	83	30	1	3	64	1.17
4651251--4651331	31	2.5	32	86	9	121	27	0	0	72	0.84
4651256--4651346	28	3.2	31	75	19	99	28	0	0	71	0.86
4652216--4652248	17	1.9	17	88	11	50	0	3	18	78	0.87
4652470--4652568	28	3.5	28	77	14	96	28	0	1	70	0.94
4652932--4652994	27	2.4	27	73	7	67	25	22	31	20	1.98
4653508--4653549	21	2.0	21	100	0	84	52	4	14	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4658805--4658838	14	2.5	13	86	9	50	29	0	2	67	1.05
4659214--4659246	7	4.4	8	96	3	52	18	0	0	81	0.68
4659215--4659264	17	2.9	17	85	8	57	22	4	0	74	0.99
4659999--4660028	8	3.8	8	100	0	60	0	0	10	90	0.47
4660014--4660062	9	5.3	9	82	2	53	10	4	4	81	0.95
4660016--4660061	23	2.0	23	86	4	65	10	4	4	80	0.99
4660322--4660406	43	2.0	43	92	0	143	29	29	11	29	1.92
4671367--4671400	12	2.8	12	100	0	68	29	26	26	17	1.98
4682663--4682708	24	2.0	24	91	4	76	78	2	17	2	0.96
4693494--4693742	138	1.8	137	92	2	419	29	14	10	46	1.77
4693932--4694038	53	2.0	53	98	0	205	36	13	15	34	1.87
4697981--4698020	20	2.0	20	85	5	53	25	17	5	52	1.64
4699111--4699174	32	2.0	32	90	0	101	26	17	28	28	1.97
4705968--4706038	2	36.5	2	94	5	128	50	0	0	49	1.00
4706627--4706666	17	2.4	17	87	4	55	60	0	7	32	1.25
4722929--4722983	16	3.3	16	70	9	56	27	10	21	40	1.87
4725775--4725811	14	2.7	15	84	16	53	62	0	37	0	0.96
4728053--4728079	2	13.5	2	100	0	54	0	0	48	51	1.00
4734881--4734937	25	2.2	25	78	3	60	52	12	7	28	1.64
4737407--4737439	13	2.5	13	95	0	57	27	27	18	27	1.98
4737576--4737692	58	2.0	58	94	0	207	15	15	20	48	1.81
4741902--4741943	21	2.0	21	100	0	84	47	23	9	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4746069--4746158	20	4.7	20	71	15	73	57	1	0	41	1.06
4746209--4746294	43	2.0	44	82	11	106	51	2	0	46	1.13
4755621--4755671	25	2.0	25	96	0	93	50	11	27	9	1.70
4769137--4769212	37	2.1	37	85	2	100	39	2	5	52	1.38
4769398--4769455	22	2.6	22	75	17	57	74	3	18	3	1.11
4779879--4780029	80	1.9	81	91	1	250	39	22	11	25	1.88
4784227--4784253	3	9.0	3	100	0	54	33	0	33	33	1.58
4788252--4788293	19	2.2	19	91	0	66	50	11	2	35	1.52
4789269--4789310	2	21.0	2	95	0	75	47	0	0	52	1.00
4797645--4797683	3	13.0	3	100	0	78	33	0	0	66	0.92
4807977--4808013	13	2.8	14	84	12	51	45	0	0	54	1.00
4808049--4808098	22	2.3	22	89	3	75	20	10	0	70	1.16
4808232--4808267	17	2.0	19	89	10	58	25	2	0	72	0.98
4810296--4810339	9	4.9	9	88	0	70	11	15	31	40	1.83
4810287--4810341	27	2.0	27	89	0	83	9	20	30	40	1.83
4848844--4848885	7	6.0	7	88	0	66	28	28	26	16	1.97
4849282--4849377	48	2.0	47	92	6	158	39	4	10	44	1.58
4849625--4849719	50	1.9	50	80	4	111	36	8	14	40	1.77
4849644--4849768	60	2.1	61	81	4	146	31	5	16	46	1.70
4849868--4849931	22	2.9	22	81	4	67	21	9	23	45	1.81
4849926--4849976	22	2.3	22	82	3	66	21	7	31	39	1.82
4849895--4850038	45	3.2	45	76	10	150	24	9	29	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4849966--4850038	23	3.2	23	90	0	119	24	10	28	35	1.90
4850067--4850128	21	2.9	22	73	4	54	46	22	6	24	1.75
4850804--4850841	19	2.0	20	89	5	60	65	0	2	31	1.06
4861035--4861068	2	17.0	2	100	0	68	50	0	0	50	1.00
4879135--4879242	53	2.0	53	100	0	216	24	28	16	30	1.96
4885690--4885719	12	2.5	12	88	0	51	23	26	16	33	1.96
4894704--4894740	2	19.0	2	88	5	58	45	0	0	51	1.01
4904528--4904575	24	2.0	24	91	0	78	37	20	18	22	1.94
4914314--4914339	2	13.0	2	100	0	52	50	0	50	0	1.00
4931714--4931772	30	2.0	29	83	12	75	66	5	0	28	1.13
4932167--4932203	19	1.9	19	88	0	56	51	8	10	29	1.65
4945496--4945558	32	2.0	32	84	9	85	57	4	0	38	1.20
4949428--4949513	2	45.5	2	86	11	119	44	0	1	53	1.08
4950457--4950515	26	2.3	26	96	0	109	64	13	16	5	1.45
4957164--4957192	3	9.7	3	100	0	58	68	0	0	31	0.89
4959924--4959969	22	2.1	22	100	0	92	43	21	10	23	1.84
4982123--4982155	15	2.3	15	89	5	50	42	9	0	48	1.35
4982330--4982423	30	3.2	30	77	11	88	53	4	6	36	1.46
5007144--5007179	17	2.1	17	89	0	54	55	0	0	44	0.99
5007786--5007941	61	2.6	60	91	3	260	41	7	6	44	1.57
5007785--5007961	29	5.9	30	75	5	151	41	7	7	43	1.60
5007986--5008044	31	1.9	31	86	3	84	40	6	10	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5007923--5008105	81	2.3	81	79	7	192	37	7	9	45	1.65
5008064--5008120	29	1.9	30	86	10	82	43	5	5	45	1.49
5026509--5026606	2	47.5	2	80	13	92	44	4	5	44	1.44
5026927--5026955	14	2.0	15	93	6	51	0	24	0	75	0.80
5048663--5048776	51	2.2	53	83	10	137	36	7	3	52	1.46
5049058--5049082	12	2.1	12	100	0	50	32	0	0	68	0.90
5053289--5053315	7	3.9	7	100	0	54	25	29	14	29	1.95
5054148--5054194	2	24.0	2	95	4	87	51	0	0	48	1.00
5070790--5070839	25	2.0	26	84	4	66	50	8	18	24	1.73
5078966--5079013	22	2.2	22	88	3	71	18	14	31	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50