genome.fa.s8.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  1  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93--371	7	39.6	7	83	10	284	37	45	1	15	1.57
10349--10392	6	7.0	6	82	7	52	68	2	15	13	1.31
11044--11104	13	4.1	14	74	15	52	34	0	0	65	0.93
12106--12239	34	3.9	35	79	10	150	25	8	38	27	1.84
12104--12246	35	4.1	34	78	9	146	27	7	39	25	1.83
12104--12246	69	2.1	69	90	2	225	27	7	39	25	1.83
12352--12395	15	2.7	17	72	13	56	77	0	20	2	0.88
12340--12404	14	4.9	13	78	14	62	72	0	26	1	0.94
12409--12449	7	5.7	7	82	5	55	85	0	0	14	0.60
12412--12448	19	1.9	19	94	0	65	83	0	0	16	0.64
12409--12454	19	2.5	18	83	13	58	82	0	0	17	0.67
14702--14737	15	2.3	15	90	9	54	80	2	16	0	0.83
35456--35485	15	2.0	15	93	0	51	6	36	0	56	1.26
42101--42139	2	19.5	2	100	0	78	51	0	0	48	1.00
43106--43168	31	2.0	31	100	0	126	39	6	12	41	1.69
73656--73700	19	2.4	19	92	0	72	31	15	26	26	1.96
73664--73702	19	2.1	19	100	0	78	35	15	20	28	1.93
75107--75255	4	35.5	4	82	17	155	73	0	0	26	0.84
75085--75256	9	19.7	9	75	16	166	73	0	0	26	0.84
75091--75256	31	5.3	33	83	13	158	73	0	0	26	0.83
76104--76138	15	2.4	14	90	9	52	74	0	0	25	0.82
76173--76255	25	3.1	26	75	21	73	71	0	3	25	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95940--95992	13	4.2	12	77	15	54	1	13	5	79	0.99
95940--95991	25	2.1	24	82	10	61	1	13	5	78	1.01
97969--98049	2	42.0	2	86	7	114	45	1	0	51	1.09
136040--136083	19	2.4	18	85	14	63	59	0	2	38	1.10
136341--136378	17	2.2	17	86	9	51	7	18	0	73	1.06
136269--136521	113	2.2	113	85	6	341	26	12	5	55	1.59
136454--136491	17	2.2	17	86	9	51	7	18	0	73	1.06
136304--136528	113	2.0	112	95	3	400	23	13	5	57	1.57
155307--155350	13	3.4	12	81	12	52	0	22	0	77	0.77
155307--155350	18	2.5	19	82	14	58	0	22	0	77	0.77
162729--162761	6	5.5	6	96	0	57	30	18	51	0	1.46
170403--170427	3	8.3	3	100	0	50	32	0	32	36	1.58
173101--173136	3	12.0	3	93	0	63	30	0	2	66	1.06
183744--183848	51	2.1	51	87	0	147	37	7	14	40	1.74
183970--184091	22	5.6	22	66	1	66	25	9	18	47	1.77
184109--184167	22	2.6	22	86	2	73	25	11	28	33	1.91
184177--184285	44	2.5	44	89	0	164	49	24	4	21	1.68
184179--184332	22	7.3	22	77	11	142	49	20	5	24	1.69
185446--185481	3	11.7	3	88	5	54	66	2	0	30	1.06
188810--188893	32	2.7	31	81	5	107	35	11	15	36	1.84
192140--192173	14	2.4	14	90	5	50	0	32	0	67	0.91
195696--195723	14	2.0	14	100	0	56	21	21	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208277--208312	3	12.3	3	94	5	65	69	0	30	0	0.89
212319--212345	3	9.0	3	100	0	54	66	0	0	33	0.92
219883--219913	2	15.5	2	100	0	62	51	0	0	48	1.00
231000--231028	14	2.0	15	93	6	51	34	10	13	41	1.79
256618--256659	21	2.0	21	86	4	59	52	4	40	2	1.35
258636--258677	2	21.0	2	95	0	75	52	0	0	47	1.00
261650--261689	3	13.3	3	89	0	53	57	2	35	5	1.34
266301--266325	2	12.5	2	100	0	50	52	0	0	48	1.00
277218--277248	15	2.1	15	100	0	62	25	25	12	35	1.92
277531--277572	14	3.1	14	86	6	52	0	85	0	14	0.59
291807--291843	10	3.5	11	92	7	60	45	5	0	48	1.25
291837--292017	93	2.0	91	98	1	344	37	9	12	40	1.75
302646--302711	31	2.1	31	100	0	132	65	9	13	12	1.48
319208--319651	222	2.0	222	93	0	764	32	21	17	28	1.96
331338--331371	15	2.3	15	90	10	52	5	8	2	82	0.93
338183--338213	2	16.0	2	93	6	55	0	51	0	48	1.00
345729--345826	22	4.5	22	85	3	110	24	16	21	37	1.93
345788--345845	21	2.8	21	89	0	89	22	17	25	34	1.96
345834--345938	23	4.6	23	84	4	81	20	12	28	38	1.89
345882--345944	23	2.7	23	97	0	117	20	12	26	39	1.89
345882--345975	23	4.1	23	88	0	116	26	11	25	36	1.90
347969--348018	24	2.3	21	78	21	66	8	26	14	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347975--348023	24	2.0	24	100	0	98	12	24	12	51	1.73
349014--349054	2	20.5	2	100	0	82	51	0	0	48	1.00
349812--349853	2	21.0	2	100	0	84	50	0	0	50	1.00
365595--365636	22	1.9	22	85	9	59	14	2	16	66	1.35
370556--370668	57	2.0	57	98	0	217	19	21	7	51	1.72
388176--388205	3	10.0	3	92	0	51	63	0	0	36	0.95
390566--390613	13	3.5	13	80	8	60	66	6	0	27	1.15
390896--390944	22	2.3	22	82	10	57	51	0	0	48	1.00
391585--391676	2	46.5	2	90	6	143	51	1	1	45	1.15
403286--403331	23	2.0	23	91	0	74	41	13	6	39	1.70
411777--411851	2	37.5	2	97	0	141	49	1	0	49	1.09
436098--436130	15	2.1	17	88	11	52	0	6	6	87	0.65
467727--467754	3	9.3	3	100	0	56	32	0	0	67	0.91
473914--473938	2	12.5	2	100	0	50	52	0	0	48	1.00
478955--479108	77	2.0	76	84	3	202	32	24	22	20	1.98
505222--505269	23	2.1	23	96	0	87	14	18	18	47	1.82
512164--512458	90	3.3	90	90	0	464	24	21	21	32	1.98
512432--512664	24	10.1	24	64	15	91	23	17	21	37	1.94
512164--512462	45	6.6	45	84	0	391	24	22	21	31	1.98
512397--512533	69	2.0	69	95	0	247	23	18	21	36	1.95
512342--512644	114	2.7	113	85	0	399	23	19	21	35	1.96
512450--512578	45	2.9	45	88	0	168	24	17	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512511--512703	68	2.8	68	84	5	246	24	18	19	36	1.94
512501--512709	69	3.0	68	83	6	269	24	18	20	36	1.95
532360--532394	6	5.8	6	86	0	52	34	2	62	0	1.10
547667--547711	21	2.1	22	87	4	65	60	4	26	8	1.46
550643--550691	2	25.0	2	83	4	64	51	6	0	42	1.27
553936--553966	3	10.3	3	100	0	62	32	0	0	67	0.91
558971--559054	43	2.0	43	85	0	114	35	10	19	34	1.86
561953--561995	21	2.0	21	83	16	54	2	65	0	32	1.06
573137--573212	29	2.6	29	83	4	91	47	5	26	21	1.71
573480--573529	26	1.9	26	87	0	73	22	22	20	36	1.96
585359--585385	12	2.2	12	100	0	54	44	22	18	14	1.86
605676--605711	16	2.2	17	90	5	56	16	41	16	25	1.89
605848--605905	30	1.9	30	82	6	73	32	0	0	67	0.91
605850--605893	23	2.0	21	83	12	54	27	0	0	72	0.85
630466--630526	24	2.7	23	78	14	72	52	3	0	44	1.17
636693--636833	72	2.0	72	84	0	183	35	11	19	34	1.87
641513--641608	47	2.0	47	91	0	156	38	19	20	20	1.94
644196--644227	3	10.7	3	93	0	55	68	3	0	28	1.04
653849--653886	6	6.2	6	87	6	58	50	15	31	2	1.58
655968--656035	22	3.1	22	95	2	120	20	30	17	30	1.96
668737--668906	29	5.2	32	73	22	124	47	4	10	38	1.57
668748--668904	68	2.4	62	81	11	206	45	4	10	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668775--668906	68	1.9	68	95	0	237	47	3	11	37	1.58
688317--688375	30	2.0	30	96	0	109	23	15	23	37	1.93
696798--696841	18	2.4	18	81	7	54	18	2	54	25	1.55
696870--696950	24	3.5	24	78	10	96	19	2	53	24	1.58
696853--696882	3	10.0	3	100	0	60	0	0	66	33	0.92
696798--696974	21	8.4	21	70	15	89	19	2	54	22	1.57
697066--697121	21	2.7	21	77	0	58	19	1	55	23	1.53
696892--697160	147	1.8	148	90	2	423	22	8	44	24	1.80
697192--697243	21	2.5	21	75	6	52	15	5	50	28	1.67
697089--697732	348	1.9	346	83	4	859	19	10	43	27	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50