genome.fa.s8.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  19  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8904364--8904462	23	4.3	23	77	2	83	36	13	31	19	1.90
8904498--8904554	23	2.5	23	80	5	62	31	15	31	21	1.94
8904511--8904555	23	2.0	23	86	0	63	28	13	37	20	1.90
8904545--8904649	47	2.2	47	86	0	147	26	13	32	27	1.94
8904653--8904852	81	2.5	80	81	4	213	30	12	33	24	1.92
8904604--8904943	185	1.8	185	85	2	477	30	13	32	24	1.93
8904734--8904936	104	2.0	104	80	2	228	31	13	30	24	1.94
8904931--8904995	23	2.8	23	85	0	85	27	20	27	24	1.99
8904907--8904995	46	1.9	46	84	4	117	31	19	25	23	1.98
8905448--8905587	63	2.2	63	79	0	163	27	14	27	31	1.95
8905625--8905763	31	4.5	31	93	0	233	28	15	21	33	1.94
8908132--8908322	81	2.4	80	84	4	224	29	20	27	22	1.98
8909775--8910070	31	9.4	31	81	4	322	28	34	11	26	1.91
8909775--8910062	62	4.5	62	84	6	371	28	34	11	26	1.90
8909775--8910070	130	2.3	124	86	6	398	28	34	11	26	1.91
8910718--8910891	81	2.1	81	97	0	330	19	27	13	39	1.90
8910927--8911032	24	4.4	24	85	0	140	22	30	19	27	1.98
8914242--8914267	13	2.0	13	100	0	52	46	7	0	46	1.31
8915390--8915447	28	2.1	28	84	9	75	24	22	22	31	1.99
8919551--8919594	11	4.3	11	81	18	51	0	22	9	68	1.18
8923517--8923580	29	2.2	29	83	2	76	43	17	7	31	1.77
8932419--8932462	11	4.3	11	81	18	51	0	22	9	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8933352--8933411	32	1.9	31	89	3	93	45	1	3	50	1.28
8934931--8935294	184	2.0	186	84	4	486	41	15	12	29	1.85
8939162--8939215	23	2.3	23	90	6	83	46	0	1	51	1.11
8939048--8939308	135	1.9	137	85	3	357	32	6	3	56	1.44
8939575--8939661	33	2.7	32	82	5	95	37	6	42	12	1.70
8947827--8947854	5	5.6	5	100	0	56	0	17	0	82	0.68
8962047--8962084	19	2.0	19	89	0	58	34	5	15	44	1.69
8965133--8965220	43	2.0	43	100	0	176	39	9	14	36	1.78
8973358--8973453	49	2.0	47	93	6	158	42	14	8	33	1.76
8973997--8974026	10	2.8	11	90	10	53	76	0	0	23	0.78
8974701--8974745	16	2.8	16	96	0	81	13	11	35	40	1.80
8979910--8979950	21	1.9	21	85	5	55	63	7	21	7	1.45
8985577--8985666	45	2.0	45	97	0	171	38	8	11	41	1.72
9006928--9006963	19	1.9	18	88	5	54	75	2	0	22	0.94
9009065--9009254	98	1.9	97	98	0	362	34	4	8	51	1.55
9009270--9009304	17	2.0	18	88	5	54	51	0	0	48	1.00
9013673--9013698	2	13.0	2	100	0	52	0	50	0	50	1.00
9013698--9013741	2	23.5	2	84	13	58	50	0	0	50	1.00
9013700--9013741	7	6.0	7	80	8	50	50	0	0	50	1.00
9024775--9024866	31	3.0	31	76	6	96	43	8	16	31	1.78
9025930--9025968	19	2.1	19	85	4	53	30	17	7	43	1.77
9026132--9026226	45	2.1	45	84	0	118	23	2	41	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9027191--9027219	15	1.9	15	100	0	58	20	6	6	65	1.40
9029737--9029779	13	3.4	13	75	18	54	18	4	16	60	1.52
9045487--9045529	17	2.7	15	79	10	50	25	2	11	60	1.43
9046828--9046862	9	3.9	9	88	0	52	25	40	0	34	1.56
9056787--9056853	30	2.3	28	82	5	71	29	8	19	41	1.82
9062461--9062521	23	2.7	23	78	0	68	26	16	39	18	1.91
9064160--9064214	6	9.2	6	83	0	56	32	3	34	29	1.75
9064491--9064522	14	2.4	14	94	5	57	31	12	21	34	1.91
9074226--9074340	54	2.1	56	83	3	153	39	7	12	40	1.71
9074443--9074540	34	3.0	34	88	4	139	36	20	3	39	1.68
9074840--9075132	102	2.9	102	90	3	430	25	17	12	44	1.84
9087827--9087885	21	2.8	21	78	0	73	38	23	16	20	1.92
9087827--9087893	21	3.2	21	78	0	71	38	25	14	20	1.91
9091330--9091439	43	2.6	43	86	5	143	20	36	18	24	1.95
9092755--9092794	17	2.4	17	95	0	71	55	0	20	25	1.44
9102986--9103071	24	3.6	24	93	0	154	46	3	19	30	1.67
9159900--9159934	2	18.0	2	94	5	63	48	0	0	51	1.00
9167688--9167727	2	19.5	2	94	5	71	47	0	2	50	1.14
9179261--9179319	28	2.1	28	87	6	84	23	18	22	35	1.96
9179924--9179948	11	2.3	11	100	0	50	24	0	0	76	0.80
9188689--9188713	12	2.1	12	100	0	50	36	0	0	64	0.94
9189788--9189841	17	3.4	16	80	7	65	14	1	5	77	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9189784--9189836	18	2.9	18	81	10	56	13	1	3	81	0.92
9190338--9190373	3	12.0	3	100	0	72	33	0	0	66	0.92
9190532--9190582	3	17.0	3	100	0	102	33	0	0	66	0.92
9190338--9190732	209	1.9	208	100	0	781	29	11	3	55	1.52
9191483--9191512	14	2.1	14	93	6	51	3	0	33	63	1.11
9194645--9194693	23	2.1	23	96	0	89	36	16	24	22	1.94
9197657--9197682	2	13.0	2	100	0	52	50	0	0	50	1.00
9200044--9200068	13	1.9	13	100	0	50	44	0	0	56	0.99
9214890--9214916	14	1.9	14	100	0	54	37	29	7	25	1.83
9218003--9218081	35	2.3	35	88	4	115	27	10	17	44	1.81
9221410--9221456	20	2.3	21	81	3	60	51	0	8	40	1.33
9222402--9222426	13	1.9	13	100	0	50	48	8	0	44	1.32
9225839--9225893	27	2.0	28	85	7	76	25	10	23	40	1.87
9227026--9227059	15	2.4	14	90	5	50	58	5	11	23	1.55
9227878--9228000	43	2.9	42	80	4	138	24	34	15	26	1.95
9231450--9231517	33	2.1	33	100	0	136	38	11	17	32	1.86
9234500--9234537	2	19.0	2	100	0	76	50	0	0	50	1.00
9234603--9234639	2	18.5	2	100	0	74	48	0	0	51	1.00
9243258--9243298	21	2.0	21	85	0	55	34	17	24	24	1.96
9260438--9260463	2	13.0	2	100	0	52	50	0	0	50	1.00
9269336--9269529	54	3.6	54	90	0	298	25	37	13	23	1.92
9278407--9278466	30	2.1	29	81	6	68	31	8	21	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9283797--9283918	32	3.8	32	76	11	113	25	11	27	35	1.90
9283788--9283918	67	2.0	67	89	1	201	26	10	26	35	1.89
9283788--9283886	35	2.9	35	74	15	118	27	11	28	33	1.91
9283794--9283933	67	2.1	66	86	1	190	28	10	27	34	1.89
9284702--9284803	38	2.6	38	79	14	111	23	20	36	19	1.95
9290753--9290795	21	2.1	20	91	4	68	32	11	11	44	1.77
9292537--9292596	30	2.1	29	81	6	68	31	8	21	38	1.83
9296623--9296662	19	2.2	19	86	4	55	50	0	2	47	1.14
9303212--9303271	30	2.1	30	81	6	70	31	8	21	38	1.83
9306333--9306378	13	3.5	13	80	16	51	45	8	0	45	1.34
9307112--9307152	20	2.0	20	86	13	57	48	14	12	24	1.78
9316822--9316847	9	2.9	9	100	0	52	23	0	57	19	1.40
9324821--9324908	25	3.5	25	88	0	140	15	21	13	48	1.80
9332243--9332289	24	1.9	25	83	12	62	34	25	10	29	1.90
9332286--9332359	36	2.1	36	87	5	105	35	24	9	31	1.87
9332739--9332795	22	2.5	23	77	13	64	0	19	5	75	0.99
9340169--9340215	10	4.7	10	78	7	51	6	14	2	76	1.08
9340169--9340215	20	2.4	19	85	7	58	6	14	2	76	1.08
9341016--9341204	37	5.2	34	67	20	116	20	13	35	30	1.91
9341044--9341244	40	5.4	39	68	17	156	19	14	34	30	1.92
9341016--9341247	74	3.1	74	94	1	396	20	14	35	30	1.92
9348122--9348191	30	2.4	29	86	11	90	62	10	27	0	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9348248--9348330	34	2.4	34	83	2	94	26	12	30	31	1.92
9348267--9348356	34	2.6	34	83	0	117	23	13	28	34	1.92
9348663--9348705	4	10.0	4	95	5	59	76	0	23	0	0.78
9348664--9348710	4	10.6	5	95	4	52	80	0	19	0	0.70
9349999--9350041	20	2.2	19	83	4	50	27	4	2	65	1.25
9350814--9350853	21	1.9	21	85	10	55	17	52	7	22	1.69
9359586--9359645	23	2.6	23	89	0	84	26	1	38	33	1.67
9361319--9362949	816	2.0	815	99	0	3244	31	12	22	34	1.91
9365461--9365506	15	3.1	15	84	9	67	21	2	19	56	1.52
9372183--9372238	29	1.9	29	85	0	76	66	0	33	0	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50