genome.fa.s8.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  17  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8186794--8186937	71	2.0	71	97	0	270	32	21	14	31	1.93
8187305--8187473	39	4.3	39	83	1	205	47	19	19	13	1.82
8196509--8196567	30	2.0	28	90	6	91	28	18	16	35	1.93
8196511--8196569	14	4.1	14	82	8	82	25	18	20	35	1.95
8201521--8201561	20	2.0	21	90	4	66	31	21	7	39	1.81
8206729--8206817	45	2.0	45	90	0	142	20	28	15	35	1.93
8209748--8209772	13	1.9	13	100	0	50	44	0	8	48	1.32
8215878--8215953	35	2.2	35	88	2	109	57	14	0	27	1.37
8216157--8216198	15	2.9	15	86	10	61	57	0	7	35	1.26
8217016--8217098	41	2.0	41	100	0	166	43	14	21	20	1.87
8227885--8228070	99	1.9	98	98	1	363	42	11	5	39	1.65
8230257--8230355	23	4.3	23	81	7	112	22	12	26	39	1.89
8230388--8230478	25	3.6	25	80	5	103	19	12	28	39	1.88
8233821--8233916	43	2.2	43	100	0	192	25	21	19	33	1.97
8236420--8236497	35	2.2	36	81	2	86	32	33	11	23	1.90
8236388--8236502	36	3.2	36	75	6	117	29	31	14	24	1.95
8236477--8236581	52	2.0	52	98	0	201	31	33	14	20	1.93
8238528--8238552	13	1.9	13	100	0	50	44	0	8	48	1.32
8242878--8242978	22	4.5	23	75	6	100	40	28	9	20	1.85
8242878--8242986	44	2.5	44	81	1	137	40	29	10	20	1.85
8243053--8243131	22	3.6	22	69	24	67	41	26	10	21	1.85
8243030--8243124	44	2.2	44	88	3	138	36	27	11	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8242897--8243129	126	1.8	125	80	5	272	38	26	12	22	1.89
8251954--8252007	25	2.2	25	96	0	99	31	0	16	51	1.45
8252807--8252866	19	3.2	19	75	17	54	18	5	3	73	1.16
8252876--8252918	9	4.7	9	81	16	52	23	2	0	74	0.93
8254610--8254657	23	2.2	21	85	7	60	50	0	4	45	1.21
8257017--8257057	21	2.0	21	85	0	55	65	7	4	21	1.37
8257030--8257094	23	2.8	23	77	13	80	64	9	7	18	1.46
8257709--8257765	23	2.6	21	77	8	60	66	0	1	31	1.02
8257703--8257751	17	2.8	17	78	12	55	69	0	0	28	0.88
8264835--8264885	2	25.5	2	100	0	102	50	0	49	0	1.00
8271166--8271262	36	2.7	36	95	0	167	30	27	14	26	1.95
8274738--8274762	13	1.9	13	100	0	50	48	0	32	20	1.50
8274987--8275035	14	3.4	14	75	5	53	51	6	26	16	1.68
8274995--8275062	15	4.7	15	73	12	61	50	8	22	19	1.75
8274987--8275062	29	2.6	28	85	4	98	50	7	23	18	1.73
8275330--8275388	26	2.3	26	100	0	118	18	20	27	33	1.96
8338040--8338085	19	2.4	19	89	7	67	56	0	2	41	1.11
8340899--8340945	14	3.3	14	91	5	76	40	0	23	36	1.55
8351070--8351189	8	14.4	8	69	19	59	59	1	2	36	1.21
8351074--8351120	20	2.5	19	89	6	69	65	0	0	34	0.93
8351080--8351120	18	2.4	17	88	8	57	65	0	0	34	0.93
8351701--8351770	9	7.3	9	73	19	54	32	1	4	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8351703--8351774	28	2.6	27	76	12	74	31	1	4	62	1.23
8365361--8365385	2	12.5	2	100	0	50	48	0	0	52	1.00
8366133--8366235	47	2.2	47	92	0	179	29	40	5	24	1.78
8366815--8366864	15	3.3	15	76	13	50	70	0	6	24	1.10
8377331--8377424	43	2.2	43	92	0	152	22	30	20	26	1.98
8378226--8378269	20	2.1	21	83	4	54	45	6	22	25	1.77
8380042--8380112	35	2.0	35	83	0	88	36	15	16	30	1.90
8382782--8382818	16	2.2	17	95	4	67	21	8	0	70	1.13
8392279--8392370	43	2.1	43	86	4	123	21	30	21	26	1.99
8402255--8402295	3	13.7	3	94	0	64	68	4	0	26	1.10
8411133--8411160	2	14.0	2	100	0	56	50	0	0	50	1.00
8417441--8417478	19	2.0	19	100	0	76	42	31	0	26	1.56
8449931--8450007	9	8.6	8	76	18	64	23	0	1	75	0.88
8449919--8450011	4	21.0	4	79	16	71	23	0	1	75	0.87
8449922--8450011	5	19.6	5	80	17	72	23	0	1	75	0.87
8449913--8450011	23	4.4	22	79	14	96	23	0	1	75	0.86
8449923--8450011	32	2.8	31	86	11	126	23	0	1	75	0.87
8451519--8451561	22	1.9	22	85	4	59	81	2	11	4	0.93
8452446--8452822	38	10.0	38	86	2	494	23	16	19	41	1.90
8452855--8452910	20	2.8	20	83	5	69	83	14	1	0	0.72
8452855--8452911	23	2.4	22	83	13	69	84	14	1	0	0.71
8452853--8452928	27	2.8	27	80	9	75	84	10	2	2	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8452853--8452909	8	6.8	8	79	13	53	84	14	1	0	0.71
8452856--8452927	18	3.9	17	83	7	72	83	11	2	2	0.86
8454087--8454116	14	2.1	14	100	0	60	20	0	26	53	1.46
8454433--8454465	16	2.0	17	94	5	59	78	0	0	21	0.75
8454774--8454845	8	8.6	8	72	18	58	73	0	2	23	0.96
8454796--8454879	3	28.3	3	68	15	50	70	0	3	26	1.04
8454782--8454888	11	8.8	12	74	18	71	71	0	2	25	1.06
8454773--8454860	28	3.3	27	81	9	92	73	0	3	22	0.97
8454793--8454888	6	15.2	6	72	16	61	70	1	3	25	1.08
8454773--8454888	49	2.4	49	80	11	123	71	0	2	25	1.04
8454773--8454884	20	5.8	19	74	19	74	71	0	2	25	1.05
8454773--8454888	15	7.3	15	69	23	53	71	0	2	25	1.04
8454773--8454888	9	12.1	9	71	23	69	71	0	2	25	1.04
8456211--8456631	211	2.0	211	93	0	718	35	15	12	36	1.85
8456727--8456755	13	2.2	13	100	0	58	31	24	6	37	1.82
8457429--8457476	18	2.6	18	75	15	53	43	0	2	54	1.12
8460028--8460069	22	1.9	22	90	0	66	33	11	16	38	1.86
8464509--8464570	19	3.1	19	81	11	54	40	0	9	50	1.35
8464518--8464570	22	2.3	24	90	6	83	41	0	7	50	1.30
8478944--8479006	30	2.1	30	93	0	108	15	34	11	38	1.83
8480559--8480597	16	2.4	16	82	0	51	48	2	5	43	1.38
8485527--8486155	316	2.0	316	87	2	906	36	14	19	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8498115--8498158	21	2.1	21	91	0	70	34	36	9	20	1.84
8499596--8499726	25	5.2	25	76	3	120	24	15	21	38	1.92
8501775--8501807	16	2.1	16	94	5	59	63	21	3	12	1.41
8504847--8504945	49	2.0	48	94	3	180	61	10	5	22	1.46
8507436--8507489	2	27.0	2	100	0	108	50	0	0	50	1.00
8507537--8507634	42	2.3	43	87	3	137	22	35	20	21	1.96
8507688--8507714	2	13.5	2	100	0	54	48	0	0	51	1.00
8510398--8510482	42	2.0	42	86	0	116	30	23	17	28	1.97
8511564--8511606	22	2.0	22	90	0	68	37	27	4	30	1.77
8514995--8515062	29	2.3	30	85	7	86	52	2	2	41	1.31
8517741--8517793	6	8.3	6	82	12	52	3	16	37	41	1.67
8524569--8524634	3	22.0	3	93	0	114	0	30	33	36	1.58
8541235--8541289	28	1.9	29	82	17	71	58	0	3	38	1.16
8543460--8543507	22	2.1	24	88	7	73	22	2	4	70	1.15
8545271--8545347	21	3.7	21	94	0	136	28	15	16	38	1.90
8545271--8545367	42	2.3	42	83	3	124	30	13	15	40	1.86
8545543--8545585	20	2.2	20	82	0	50	30	23	13	32	1.93
8545917--8546009	28	3.3	28	76	0	78	27	17	20	34	1.95
8546030--8546117	34	2.6	34	85	1	106	23	13	28	34	1.93
8546070--8546161	33	2.7	33	80	9	96	32	14	21	31	1.93
8546811--8547123	157	2.0	156	100	0	617	33	15	7	42	1.76
8552584--8552621	20	1.9	20	84	10	51	34	0	18	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8553794--8553895	39	2.6	38	80	4	123	34	15	21	28	1.94
8565602--8565655	27	2.0	27	85	7	74	48	0	1	50	1.11
8572466--8572510	8	5.6	8	83	0	54	42	6	2	48	1.41
8572466--8572510	6	7.5	6	82	0	54	42	6	2	48	1.41
8573299--8573332	6	5.7	6	85	0	50	41	0	58	0	0.98
8580861--8580900	21	1.9	21	85	10	55	60	5	2	32	1.32
8583050--8583133	41	2.0	41	86	2	114	30	9	9	50	1.67
8584994--8585077	35	2.4	35	85	0	123	33	8	29	28	1.86
8586610--8586647	19	2.0	19	94	0	67	23	0	34	42	1.55
8587691--8587728	19	2.0	19	94	0	67	26	2	28	42	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50