genome.fa.s8.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  38  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16590911--16591151	49	5.0	47	73	17	208	51	2	3	42	1.33
16590690--16591138	142	3.2	142	92	1	722	51	2	3	42	1.31
16590976--16591042	26	2.6	25	79	6	80	58	1	0	40	1.07
16590856--16591144	49	6.2	46	68	25	141	51	2	3	42	1.31
16590906--16591328	192	2.2	193	84	5	543	51	1	2	43	1.27
16591070--16591176	49	2.2	49	88	1	153	50	1	1	45	1.23
16591119--16591451	155	2.2	148	84	8	444	53	2	1	42	1.21
16591210--16591293	41	2.0	41	82	8	100	50	1	0	48	1.08
16591355--16591397	18	2.4	19	81	11	56	53	0	0	46	1.00
16591417--16591468	22	2.4	22	83	0	68	59	1	0	38	1.08
16592645--16592679	2	17.5	2	100	0	70	51	0	0	48	1.00
16602030--16602062	3	10.7	3	93	6	57	66	0	0	33	0.92
16602488--16602560	31	2.5	30	82	12	89	35	2	2	58	1.26
16602481--16602545	28	2.4	25	77	22	69	33	3	3	60	1.28
16603330--16603387	30	1.9	30	89	0	89	32	12	8	46	1.71
16606277--16606441	61	2.7	59	83	4	195	23	30	16	28	1.97
16615298--16615352	6	8.3	7	77	22	57	74	1	0	23	0.91
16615301--16615358	28	2.1	27	87	9	82	75	1	1	20	0.97
16615295--16615359	28	2.3	28	82	12	80	76	1	1	20	0.94
16616050--16616110	32	1.9	32	83	6	79	68	0	29	1	0.99
16631382--16631484	24	4.4	24	65	7	68	41	21	14	22	1.89
16631377--16631529	69	2.2	69	86	0	216	39	18	15	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16631446--16631574	45	2.9	45	85	2	161	37	17	17	27	1.92
16631506--16631582	24	3.3	24	67	10	79	42	12	15	28	1.84
16631377--16631684	114	2.7	114	83	2	395	38	18	16	26	1.91
16631545--16631593	24	2.0	24	88	0	71	44	16	16	22	1.86
16631575--16631738	90	1.8	90	87	0	247	37	19	17	26	1.93
16631575--16631753	45	4.0	45	84	0	223	35	20	17	26	1.94
16631772--16631822	26	2.0	26	84	7	68	37	13	19	29	1.90
16631761--16631868	29	3.7	29	75	20	107	39	10	15	34	1.81
16631739--16631862	58	2.1	57	85	12	171	37	11	16	33	1.85
16631820--16631896	29	2.7	29	82	6	86	38	11	11	37	1.78
16632594--16632677	42	2.0	42	97	0	159	23	17	16	41	1.89
16651868--16651958	33	2.8	33	79	3	94	37	8	7	46	1.64
16652918--16652954	18	2.1	18	100	0	74	48	0	0	51	1.00
16652924--16652970	17	2.9	16	76	17	51	51	2	0	46	1.13
16655776--16655832	22	2.6	21	78	15	53	40	0	1	57	1.09
16660383--16660438	18	3.1	18	78	0	58	19	17	25	37	1.94
16661124--16661169	22	2.0	23	87	4	67	65	8	8	17	1.45
16665325--16665367	15	2.8	15	78	3	50	79	0	13	6	0.93
16667384--16667589	108	1.9	108	88	5	310	45	3	12	37	1.61
16668522--16668555	3	11.3	3	87	0	50	61	5	0	32	1.20
16675402--16675426	2	12.5	2	100	0	50	0	0	48	52	1.00
16676492--16676573	33	2.6	31	84	3	101	50	19	7	23	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16678800--16678832	11	2.8	12	86	4	50	81	0	9	9	0.87
16681808--16681855	21	2.3	21	85	3	62	20	8	0	70	1.12
16683585--16683724	74	1.9	74	92	2	237	40	7	8	43	1.63
16684191--16684231	20	2.1	19	90	4	64	19	0	2	78	0.87
16684168--16684228	27	2.2	28	83	13	74	21	1	1	75	0.98
16684171--16684244	35	2.1	34	85	2	94	20	1	4	74	1.06
16685568--16685612	17	2.6	17	89	3	63	11	6	0	82	0.84
16690612--16690948	31	10.8	31	87	1	451	27	16	18	37	1.92
16694666--16694713	15	3.4	14	77	11	53	35	2	4	58	1.29
16699103--16699605	86	5.9	85	84	3	532	22	20	30	26	1.98
16701052--16701202	81	1.9	81	87	0	221	26	33	17	22	1.96
16703352--16703466	55	2.1	55	86	3	160	46	29	9	13	1.75
16703914--16703966	23	2.3	23	90	0	79	28	28	15	28	1.96
16703926--16704012	23	3.8	23	76	11	72	21	34	19	24	1.96
16703980--16704130	81	1.9	80	83	1	194	21	35	13	29	1.92
16703971--16704138	81	2.1	80	80	1	192	21	35	14	28	1.93
16704044--16704253	115	1.8	113	84	2	285	23	34	12	29	1.92
16704209--16704269	23	2.7	23	84	0	77	19	39	13	27	1.89
16704164--16704484	162	2.0	163	88	3	477	23	36	14	25	1.93
16704274--16704405	58	2.3	58	81	2	140	25	36	15	23	1.93
16704371--16704426	23	2.4	23	75	0	58	23	37	10	28	1.88
16704477--16704533	23	2.5	23	76	0	60	22	31	14	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16704517--16704580	24	2.7	23	76	7	67	23	34	15	26	1.95
16704540--16704719	81	2.2	81	78	0	198	27	35	11	25	1.91
16704667--16704729	23	2.8	21	85	9	72	28	38	7	25	1.84
16705245--16705327	40	2.1	40	97	0	157	28	20	26	24	1.99
16722362--16722400	20	2.0	20	90	5	62	53	0	43	2	1.14
16725400--16725437	19	2.0	19	94	0	67	42	28	0	28	1.56
16726913--16726957	2	22.5	2	100	0	90	51	0	48	0	1.00
16726762--16727168	203	2.0	202	98	1	789	26	11	26	36	1.89
16727116--16727161	2	22.5	2	95	4	83	50	2	47	0	1.13
16738512--16738605	45	2.1	45	97	0	179	22	9	13	54	1.68
16740317--16740353	2	18.5	2	100	0	74	48	0	0	51	1.00
16743394--16743427	16	2.0	18	88	11	54	67	5	0	26	1.13
16756135--16756173	20	2.0	20	89	0	60	25	33	28	12	1.93
16759518--16759623	30	3.5	30	81	15	121	51	5	4	37	1.46
16772836--16772884	16	3.1	16	85	8	64	48	4	6	40	1.47
16773536--16773561	7	3.7	7	100	0	52	0	11	0	88	0.52
16785170--16785224	21	2.7	21	97	2	103	43	21	9	25	1.82
16795185--16795348	90	1.8	90	86	2	240	28	10	33	28	1.90
16795303--16795417	58	2.0	58	87	0	167	33	6	39	20	1.79
16795213--16795502	149	2.0	148	84	3	386	29	9	36	24	1.87
16809258--16809307	24	2.1	24	96	0	91	36	28	0	36	1.58
16818167--16818209	22	2.0	22	90	0	68	27	23	9	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16818385--16818465	30	2.7	30	74	9	76	49	9	11	29	1.70
16818669--16818719	2	25.5	2	100	0	102	50	0	0	49	1.00
16824272--16824320	21	2.3	21	85	0	62	36	16	2	44	1.59
16827079--16827107	2	14.5	2	100	0	58	0	48	0	51	1.00
16843485--16843628	71	2.0	71	85	10	213	51	4	2	40	1.36
16849916--16849959	2	22.5	2	95	4	81	50	0	0	50	1.00
16853064--16853138	25	3.0	25	100	0	150	8	28	4	60	1.43
16854459--16854483	2	12.5	2	100	0	50	48	0	0	52	1.00
16856172--16856205	2	17.5	2	93	6	61	50	0	0	50	1.00
16856966--16856990	2	12.5	2	100	0	50	52	0	0	48	1.00
16861052--16861093	22	1.9	22	85	9	59	21	11	26	40	1.88
16864477--16864539	26	2.6	23	76	13	72	39	25	7	26	1.83
16864490--16864557	26	2.6	26	90	0	109	38	22	10	29	1.87
16866790--16866852	25	2.6	25	76	2	65	50	3	9	36	1.51
16871360--16871429	25	2.8	26	78	6	81	47	20	11	21	1.81
16871435--16871503	25	2.7	26	80	6	79	46	21	13	18	1.83
16894437--16894476	6	7.0	6	83	16	50	65	0	35	0	0.93
16894437--16894482	16	2.9	16	87	12	60	65	0	34	0	0.93
16894437--16894482	21	2.1	23	88	8	69	65	0	34	0	0.93
16894720--16894752	7	4.7	7	92	0	57	12	0	3	84	0.72
16896380--16896463	44	1.9	44	87	4	125	19	22	16	41	1.90
16896646--16896684	16	2.4	16	87	8	53	84	2	10	2	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16896646--16896704	12	4.8	12	77	6	55	79	1	16	1	0.89
16896639--16896714	13	6.2	12	76	13	59	77	2	18	1	0.95
16896633--16896818	94	2.0	95	90	4	295	68	1	20	8	1.24
16897060--16897098	15	2.5	16	91	8	71	5	12	0	82	0.83
16897162--16897199	15	2.5	15	91	8	60	2	15	0	81	0.80
16897145--16897202	27	2.2	26	84	9	73	1	15	1	81	0.86
16897145--16897203	10	5.5	11	75	15	52	1	16	1	79	0.89
16897412--16897467	15	3.9	14	80	13	51	1	10	3	83	0.83
16897426--16897467	15	2.8	15	92	7	68	2	9	0	88	0.61
16904786--16904827	20	2.0	22	86	9	61	40	2	4	52	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50