genome.fa.s8.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  30  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13496379--13496416	19	2.0	19	94	0	67	42	28	0	28	1.56
13497397--13497692	31	9.6	30	74	11	222	36	21	16	25	1.94
13497397--13497694	62	4.8	62	81	4	314	36	21	16	26	1.94
13497399--13497693	93	3.2	90	79	9	301	36	21	16	26	1.94
13498719--13498761	13	2.9	15	80	16	54	46	4	13	34	1.65
13498794--13498852	14	3.9	15	76	12	59	52	0	13	33	1.41
13498794--13498873	16	5.1	16	75	9	67	50	3	12	33	1.58
13498791--13498874	15	5.5	14	73	12	60	51	3	11	33	1.56
13500332--13500593	62	4.2	62	82	5	255	40	19	18	21	1.91
13500326--13500593	31	8.7	31	74	5	222	41	19	17	21	1.90
13500949--13501407	156	2.9	155	88	1	623	28	18	19	33	1.95
13500965--13501474	156	3.3	156	85	2	434	29	18	19	33	1.95
13503077--13503342	31	8.6	31	83	4	263	36	22	16	24	1.94
13503808--13503926	53	2.3	52	89	1	175	26	31	18	23	1.97
13503914--13504333	47	9.0	47	79	6	424	22	34	16	26	1.95
13503914--13504333	94	4.5	94	85	3	535	22	34	16	26	1.95
13503914--13504306	186	2.1	188	87	5	566	22	34	16	26	1.95
13514131--13514421	60	4.9	60	85	2	367	24	31	19	24	1.98
13514131--13514421	120	2.4	118	88	3	413	24	31	19	24	1.98
13515025--13515081	25	2.2	26	84	9	73	0	28	1	70	0.98
13515105--13515139	15	2.4	14	90	4	52	2	17	0	80	0.84
13523338--13523369	15	2.1	15	100	0	64	46	6	6	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13529483--13529552	35	2.0	35	97	0	131	28	32	8	30	1.87
13537801--13537837	17	2.2	17	90	0	56	10	35	24	29	1.89
13537906--13537934	2	14.5	2	100	0	58	48	0	0	51	1.00
13548191--13548224	2	17.0	2	93	0	59	47	0	2	50	1.16
13548227--13548275	23	2.1	23	88	0	71	28	38	6	26	1.80
13556940--13557033	39	2.4	39	87	3	127	31	25	20	22	1.98
13557425--13557534	43	2.6	43	88	2	150	20	38	18	22	1.94
13559626--13559680	25	2.2	24	83	3	65	23	32	16	27	1.96
13560960--13561013	4	14.2	4	81	14	62	25	27	0	46	1.53
13560953--13561008	11	5.5	10	76	19	62	26	28	0	44	1.54
13561429--13561461	12	2.6	13	85	9	50	3	30	0	66	1.06
13569214--13569420	55	3.8	55	86	1	254	29	31	14	24	1.94
13569492--13569521	14	2.1	14	100	0	60	56	30	6	6	1.51
13575522--13575546	9	2.8	9	100	0	50	32	20	0	48	1.50
13580738--13580956	29	7.6	28	78	6	215	40	10	13	36	1.79
13580743--13580935	57	3.4	57	81	6	187	40	10	13	34	1.80
13589172--13589277	38	2.7	39	83	11	128	24	39	15	20	1.91
13592362--13592464	38	2.6	39	86	6	138	25	18	33	22	1.96
13592436--13592580	54	2.7	53	88	6	211	22	14	39	23	1.91
13607647--13607697	25	2.0	26	81	11	61	49	3	25	21	1.67
13616310--13616383	39	1.9	38	86	2	103	41	18	5	33	1.74
13616823--13616959	72	1.9	72	83	3	177	29	23	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13618774--13618974	83	2.4	83	93	0	330	22	31	17	27	1.97
13618749--13618998	126	2.0	126	81	6	292	22	31	18	27	1.97
13618749--13618987	43	5.7	42	79	6	243	23	32	17	27	1.96
13624381--13624492	49	2.3	49	87	3	154	28	16	30	24	1.97
13625021--13625062	21	2.0	21	86	9	59	28	19	28	23	1.98
13636051--13636087	15	2.5	15	86	0	56	37	5	21	35	1.77
13636052--13636080	5	5.8	5	100	0	58	41	0	20	37	1.53
13647409--13647521	43	2.6	43	81	2	120	21	34	18	25	1.96
13655545--13655587	22	2.0	22	85	0	59	37	11	20	30	1.89
13667244--13667285	19	2.2	19	83	8	50	59	0	19	21	1.38
13667502--13667545	20	2.1	21	91	4	72	22	22	6	47	1.75
13669317--13669403	42	2.1	42	91	0	138	21	18	35	24	1.95
13669327--13669442	42	2.7	42	82	6	119	22	14	37	25	1.92
13670936--13671019	35	2.4	35	87	0	123	30	9	34	25	1.88
13670962--13671040	35	2.3	35	84	0	95	34	8	30	26	1.87
13678081--13678183	38	2.7	38	81	3	116	22	17	37	22	1.94
13680223--13680323	33	3.0	33	79	5	105	29	10	27	31	1.91
13687732--13687772	21	1.9	22	90	5	66	51	7	24	17	1.70
13687732--13687778	21	2.2	21	84	3	58	55	8	21	14	1.66
13693622--13693705	42	2.0	42	86	4	116	22	20	34	22	1.97
13701240--13701293	23	2.3	23	93	0	90	25	3	38	31	1.74
13715147--13715192	15	3.1	15	84	9	67	21	2	19	56	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13737353--13737478	42	3.0	42	87	4	182	24	32	22	20	1.98
13742390--13742432	22	2.0	22	85	0	59	34	20	11	32	1.89
13742546--13742629	36	2.4	36	86	9	111	30	34	11	22	1.90
13746979--13747020	19	2.2	19	83	8	50	59	0	19	21	1.38
13753646--13753686	21	1.9	22	95	5	75	17	21	7	53	1.67
13753703--13753745	11	4.0	11	90	3	70	0	25	9	65	1.22
13757915--13757957	22	2.0	22	85	0	59	34	20	11	32	1.89
13762472--13762513	19	2.2	19	83	8	50	59	0	19	21	1.38
13767235--13767275	21	1.9	21	85	5	55	19	24	7	48	1.74
13767288--13767334	11	4.4	11	89	5	78	0	23	10	65	1.23
13767288--13767334	21	2.2	21	92	3	76	0	23	10	65	1.23
13767536--13767620	28	3.1	28	84	5	102	27	16	20	36	1.93
13772075--13772191	42	2.8	42	93	0	198	23	35	21	20	1.96
13774414--13774557	31	4.2	34	82	11	168	23	40	10	25	1.86
13774415--13774548	67	2.0	68	89	1	207	22	41	11	25	1.87
13787867--13787931	19	3.4	19	93	2	103	26	0	29	44	1.54
13794952--13795073	43	2.8	43	78	2	129	27	19	34	18	1.96
13795427--13795518	39	2.4	39	94	0	157	20	18	25	35	1.95
13801242--13801343	38	2.7	37	87	6	150	25	16	35	22	1.95
13801242--13801372	38	3.4	38	85	4	129	23	17	35	22	1.95
13802869--13802908	15	2.7	15	84	0	53	40	20	17	22	1.92
13824613--13824638	13	2.0	13	100	0	52	46	7	0	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13825856--13825893	19	2.0	19	94	0	67	42	28	0	28	1.56
13871872--13872073	73	2.8	73	86	1	280	38	16	21	23	1.92
13886609--13886653	23	2.0	23	100	0	90	28	17	17	35	1.93
13910574--13910776	73	2.8	73	87	1	300	38	16	21	24	1.93
13913124--13913804	341	2.0	340	98	0	1299	23	25	7	42	1.80
13922681--13922900	29	7.6	28	80	7	224	38	14	9	37	1.78
13936537--13936566	5	6.0	5	92	0	51	36	20	0	43	1.52
13943175--13943199	13	1.9	13	100	0	50	48	8	0	44	1.32
13945967--13946019	22	2.5	22	84	9	65	11	32	7	49	1.67
13946722--13946772	2	25.0	2	80	4	57	47	5	1	45	1.38
13953178--13953221	22	2.0	22	82	8	54	56	9	18	15	1.65
13954058--13954082	13	1.9	13	100	0	50	44	0	8	48	1.32
13957236--13957280	20	2.2	20	88	7	65	46	17	4	31	1.68
13962859--13963114	43	5.8	43	84	6	309	22	33	16	27	1.95
13962859--13963114	89	2.9	89	88	2	376	22	33	16	27	1.95
13963109--13963153	20	2.2	21	84	11	58	40	26	2	31	1.68
13963949--13964036	23	3.8	22	75	11	70	1	23	3	71	1.08
13964172--13964266	35	2.7	35	83	4	113	29	22	7	41	1.81
13964223--13964294	35	2.1	36	81	5	85	31	22	6	38	1.81
13965664--13965708	22	2.0	22	83	8	56	66	0	8	24	1.20
13965911--13965945	2	17.5	2	100	0	70	51	0	0	48	1.00
13966568--13966638	27	2.5	30	79	13	94	59	14	19	7	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13966575--13966661	26	3.3	27	85	4	115	51	14	22	10	1.73
13969844--13969882	2	19.5	2	100	0	78	48	0	0	51	1.00
13974890--13974932	2	21.5	2	100	0	86	51	0	0	48	1.00
13976745--13976916	29	6.0	28	83	7	202	35	15	10	38	1.81
13976745--13976916	57	3.0	57	83	6	215	35	15	10	38	1.81
13979803--13979981	43	4.2	43	84	2	200	24	31	16	27	1.96
13981380--13981472	37	2.5	37	94	0	159	17	11	39	31	1.85
14008624--14008667	22	2.0	22	90	0	70	43	20	6	29	1.78
14019239--14019271	5	6.8	5	93	6	59	39	21	0	39	1.53
14019239--14019271	14	2.3	15	94	5	59	39	21	0	39	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50