genome.fa.s8.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  44  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18464581--18464621	2	20.5	2	100	0	82	0	0	48	51	1.00
18464710--18464854	68	2.1	68	85	0	191	30	11	22	35	1.90
18467270--18467509	68	3.5	67	83	3	259	34	18	10	36	1.85
18468727--18468769	16	2.6	16	81	3	50	69	11	2	16	1.28
18478635--18478661	13	2.1	13	100	0	54	70	7	7	14	1.32
18485547--18485579	2	17.5	2	87	12	52	54	0	0	45	0.99
18485658--18485688	2	16.0	2	93	6	55	51	0	0	48	1.00
18495936--18496029	23	4.1	23	74	9	75	69	0	7	23	1.14
18495942--18496029	44	1.9	47	81	6	110	68	0	7	23	1.16
18495966--18496029	22	2.7	24	71	23	64	65	0	7	26	1.19
18503887--18503919	15	2.2	15	94	0	57	15	0	0	84	0.61
18503883--18503944	21	2.8	21	77	17	63	17	1	0	80	0.79
18503883--18503948	13	5.6	12	79	15	59	18	1	0	80	0.79
18503891--18503944	21	2.6	21	91	8	85	18	1	0	79	0.82
18504167--18504206	12	3.2	12	80	13	53	20	2	0	77	0.88
18505096--18505140	21	2.1	21	91	0	72	28	33	13	24	1.93
18505776--18505833	12	5.1	11	80	15	64	3	0	12	84	0.74
18505779--18505833	17	3.1	18	78	19	62	3	0	12	83	0.77
18505777--18505829	21	2.5	21	90	6	81	3	0	11	84	0.73
18505908--18505966	26	2.3	26	84	0	82	38	8	27	25	1.84
18505974--18506298	142	2.3	142	90	1	501	37	17	20	24	1.94
18507460--18507619	82	2.0	81	83	3	205	11	28	10	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18507986--18508040	18	2.8	19	78	10	58	14	18	0	67	1.24
18516167--18516267	23	4.5	23	68	19	70	70	0	6	22	1.11
18516172--18516269	44	2.2	44	75	7	99	70	0	7	22	1.11
18518716--18518790	29	2.6	29	82	0	96	50	10	12	26	1.72
18519928--18519962	17	2.1	17	88	0	52	65	0	28	5	1.15
18521355--18521395	10	4.3	10	84	9	59	29	0	0	70	0.87
18521352--18521390	19	2.1	18	95	4	69	23	0	0	76	0.78
18521348--18521393	17	2.7	18	83	6	60	28	0	0	71	0.86
18521357--18521396	11	3.9	11	78	18	50	30	0	0	70	0.88
18521529--18521707	95	1.9	89	84	6	232	45	2	21	30	1.64
18523524--18523568	21	2.1	21	88	8	65	68	0	0	31	0.89
18524566--18524655	27	3.2	27	71	19	67	44	0	4	51	1.21
18526019--18526051	2	16.5	2	93	0	57	48	0	3	48	1.17
18535675--18535715	11	3.4	12	81	18	50	82	0	2	14	0.76
18536253--18536300	19	2.7	18	80	6	53	64	0	29	6	1.18
18536574--18536694	60	2.0	60	88	3	181	47	15	6	30	1.71
18541353--18541392	18	2.2	18	86	4	53	80	0	17	2	0.83
18546112--18546195	31	2.7	31	79	3	89	28	20	16	34	1.94
18546249--18546304	21	2.7	20	75	8	58	25	30	19	25	1.98
18546370--18546451	21	4.0	20	82	7	101	30	31	15	21	1.95
18546370--18546469	42	2.4	42	81	3	121	30	29	16	25	1.96
18546254--18546550	164	1.8	164	90	0	479	27	22	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18546532--18546570	21	1.9	20	94	5	69	25	33	17	23	1.96
18546434--18546671	101	2.4	101	88	1	343	29	22	15	33	1.94
18546631--18546713	21	3.9	22	85	4	118	27	32	14	25	1.95
18546530--18546958	143	3.0	143	86	3	603	28	24	15	31	1.96
18546779--18546828	21	2.4	21	89	0	73	30	30	18	22	1.97
18546800--18547438	122	5.2	122	87	3	842	30	21	14	33	1.93
18547163--18547215	21	2.5	20	79	8	61	30	33	13	22	1.92
18547287--18547334	21	2.3	21	88	0	69	31	29	16	22	1.96
18547849--18547885	18	2.1	18	95	5	67	81	18	0	0	0.70
18547839--18547894	29	1.9	29	82	13	71	75	21	1	1	0.99
18547995--18548066	26	2.6	27	79	18	78	55	2	38	2	1.29
18548071--18548146	38	2.0	37	82	12	93	64	2	30	2	1.21
18548060--18548292	102	2.2	107	81	9	264	59	4	32	3	1.35
18552999--18553035	2	18.5	2	88	0	56	48	2	2	45	1.30
18553364--18553430	20	3.5	20	70	25	65	58	1	0	40	1.07
18553364--18553447	33	2.4	35	88	9	120	58	1	0	40	1.06
18559253--18559289	18	2.1	18	94	0	65	40	13	5	40	1.67
18562438--18562488	15	3.6	14	82	15	52	76	3	1	17	1.03
18562440--18562481	14	2.9	14	83	13	50	76	4	2	16	1.07
18563048--18563138	40	2.3	40	86	0	119	39	15	31	13	1.86
18564458--18564495	17	2.2	18	85	4	51	73	2	2	21	1.07
18564568--18564610	19	2.2	20	91	4	70	79	0	2	18	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18564568--18564607	17	2.2	19	86	13	57	80	0	2	17	0.83
18564776--18564828	17	3.2	16	78	17	56	75	0	0	24	0.80
18564775--18564828	25	2.3	23	84	15	74	75	0	0	24	0.80
18564962--18565012	15	3.3	15	78	8	50	68	0	5	25	1.12
18564961--18565017	17	3.5	16	75	18	55	68	0	5	26	1.11
18573519--18573624	55	1.9	55	94	0	185	43	11	15	30	1.81
18587141--18587197	30	1.9	30	89	3	89	31	3	3	61	1.30
18588126--18588216	31	2.9	31	76	3	92	39	6	40	13	1.70
18588434--18588471	15	2.5	15	84	16	51	42	0	2	55	1.14
18588789--18589746	339	2.8	330	81	10	994	44	6	8	40	1.60
18589544--18589594	17	2.9	17	80	8	50	47	1	5	45	1.38
18590193--18590326	51	2.6	48	75	13	126	38	8	14	38	1.77
18590427--18590548	22	5.5	22	85	0	82	23	9	19	46	1.80
18590466--18590599	66	2.0	65	88	1	196	24	11	20	43	1.85
18590466--18590599	22	6.1	22	87	0	162	24	11	20	43	1.85
18590488--18590623	66	2.1	66	85	2	184	25	11	21	41	1.87
18590488--18590645	66	2.4	66	81	2	156	25	11	22	40	1.87
18590611--18590746	23	6.0	23	86	0	166	28	11	27	33	1.91
18590590--18590759	23	7.4	23	80	5	141	27	11	27	33	1.91
18590590--18590759	46	3.7	46	76	5	175	27	11	27	33	1.91
18590773--18590876	21	4.9	21	80	3	100	39	25	13	22	1.90
18592024--18592201	87	2.1	87	91	1	286	41	10	16	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18592369--18592408	17	2.5	17	88	8	57	62	0	0	37	0.95
18601279--18601303	12	2.1	12	100	0	50	0	24	0	76	0.80
18604455--18604506	19	2.6	21	78	9	54	50	0	0	50	1.00
18605862--18605896	2	17.5	2	100	0	70	48	0	0	51	1.00
18607709--18607742	2	17.0	2	100	0	68	50	0	0	50	1.00
18610185--18610210	6	4.3	6	100	0	52	15	0	0	84	0.62
18610932--18610977	10	4.5	10	84	10	58	2	10	0	86	0.64
18625111--18625205	37	2.5	37	85	11	122	23	4	0	72	1.02
18625140--18625184	23	2.0	22	86	4	63	20	4	0	75	0.97
18625104--18625204	27	3.5	27	78	10	112	23	4	0	71	1.06
18625105--18625220	56	2.0	58	82	12	141	23	5	0	70	1.12
18625304--18625349	14	3.8	13	81	18	55	26	0	2	71	0.97
18625332--18625429	1	98.0	1	91	0	160	4	0	0	95	0.25
18626022--18626078	25	2.2	25	75	3	60	22	7	0	70	1.11
18626522--18626815	141	2.1	141	87	0	428	14	36	10	38	1.81
18628960--18629049	20	4.7	20	68	15	64	57	3	0	38	1.15
18629227--18629272	18	2.6	18	92	0	74	47	19	10	21	1.80
18630680--18630718	20	2.0	20	89	0	60	25	15	0	58	1.37
18643137--18643189	2	26.5	2	96	0	97	50	0	0	49	1.00
18646040--18646111	31	2.5	28	78	14	83	37	4	0	58	1.18
18650878--18650911	15	2.3	15	94	0	59	88	2	0	8	0.62
18654891--18654926	18	2.0	18	94	0	63	22	25	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18664392--18664625	116	2.0	116	93	1	398	24	18	20	36	1.95
18685024--18685076	28	1.9	27	88	3	79	28	20	18	32	1.97
18685121--18685166	20	2.3	20	88	7	67	45	17	4	32	1.68
18685815--18685852	19	2.0	19	100	0	76	26	0	31	42	1.56
18687076--18687100	13	1.9	13	100	0	50	44	0	8	48	1.32
18693074--18693102	14	2.0	15	93	6	51	41	0	10	48	1.37
18693480--18693616	23	6.1	23	80	8	124	31	13	33	21	1.92
18693532--18693596	21	3.1	21	86	4	96	30	16	30	21	1.96
18693674--18693739	23	2.9	23	76	0	78	27	12	39	21	1.88
18693632--18693801	47	3.7	46	75	5	153	27	13	34	24	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50