genome.fa.s8.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  29  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12895337--12895472	43	3.2	43	86	5	177	27	16	32	24	1.96
12898861--12898928	21	3.2	21	76	2	73	22	17	20	39	1.92
12905280--12905680	208	1.9	209	88	4	605	45	7	13	33	1.71
12909608--12909666	29	2.0	29	100	0	118	38	40	10	10	1.73
12917232--12917256	13	1.9	13	100	0	50	48	8	0	44	1.32
12923673--12923716	2	21.5	2	90	4	70	50	2	2	45	1.27
12929271--12929335	33	2.0	33	81	6	78	47	0	0	52	1.00
12929289--12929340	19	2.7	19	100	0	104	44	0	0	55	0.99
12938330--12938389	30	2.1	29	81	6	68	30	8	23	38	1.84
12942007--12942051	21	2.1	21	84	15	58	4	33	2	60	1.29
12942761--12942797	19	1.9	19	88	0	56	29	27	21	21	1.99
12951232--12951322	38	2.5	37	81	3	103	26	42	10	19	1.84
12954329--12954421	28	3.3	28	89	5	136	40	11	10	36	1.77
12961567--12961612	20	2.3	20	88	7	67	32	4	17	45	1.68
12961657--12961709	28	1.9	27	88	3	79	30	18	22	28	1.98
12961657--12961715	28	2.1	28	84	6	75	30	20	23	25	1.98
12968978--12969056	2	39.5	2	89	5	124	45	0	1	51	1.09
12971278--12971342	29	2.2	29	97	0	121	49	10	21	18	1.78
12973372--12973497	37	3.5	35	79	13	112	25	36	8	29	1.86
12973392--12973497	37	2.9	37	85	5	135	26	37	8	27	1.85
12976021--12976137	42	2.8	42	88	0	162	23	20	30	25	1.98
12993785--12993920	43	3.2	42	83	8	143	25	16	33	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13004407--13004450	10	4.2	11	82	8	56	61	2	6	29	1.34
13008165--13008202	19	2.0	20	94	5	69	36	15	26	21	1.93
13010354--13010492	29	4.9	28	76	10	138	38	11	11	38	1.78
13024936--13024981	2	22.5	2	95	4	83	50	2	0	47	1.13
13029884--13030008	42	3.0	42	87	4	180	24	22	31	22	1.99
13037486--13037530	20	2.2	21	84	11	58	57	6	20	15	1.60
13037484--13037531	21	2.3	20	76	16	53	58	6	20	14	1.58
13040512--13040720	42	5.0	42	92	0	310	22	24	31	21	1.98
13043871--13043904	16	2.1	16	88	0	50	41	14	11	32	1.82
13045440--13045499	18	3.4	18	88	2	86	50	11	8	30	1.68
13047509--13047867	42	8.8	42	76	8	249	21	33	19	24	1.97
13047530--13047754	115	2.0	115	92	0	378	21	33	18	26	1.96
13060691--13060908	42	5.2	42	83	1	222	21	33	19	24	1.97
13067225--13067308	42	2.0	42	92	0	141	22	35	22	19	1.96
13068754--13068822	35	2.0	35	82	5	86	31	26	13	28	1.93
13077314--13077371	28	2.1	28	81	9	66	20	20	24	34	1.97
13092551--13092593	21	2.0	21	81	0	50	30	9	34	25	1.87
13099262--13099454	73	2.7	72	82	8	214	19	20	18	42	1.89
13101031--13101069	19	2.1	19	90	0	60	48	2	0	48	1.15
13101394--13101434	2	21.0	2	90	5	66	48	0	2	48	1.14
13117740--13117779	21	1.9	20	85	10	53	50	5	17	27	1.67
13128103--13128162	30	2.1	30	81	6	70	31	5	21	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13141994--13142180	94	2.0	93	98	0	356	38	6	5	48	1.53
13142118--13142194	36	2.1	36	81	9	86	45	9	3	41	1.54
13142940--13142990	26	2.0	26	92	0	84	50	13	15	19	1.77
13147806--13147898	42	2.2	43	86	5	127	31	22	27	18	1.97
13148372--13148408	19	1.9	19	88	0	56	32	29	18	18	1.96
13151173--13151303	42	3.1	42	82	0	154	25	18	34	22	1.96
13153384--13153532	80	1.9	80	83	5	176	36	24	9	28	1.87
13165808--13165940	42	3.1	42	87	5	162	26	33	15	24	1.95
13168070--13168108	19	2.1	19	90	0	60	20	20	15	43	1.88
13168878--13168960	42	2.0	42	87	0	121	20	21	33	24	1.97
13175957--13176131	42	4.1	42	91	3	271	24	34	17	24	1.96
13185618--13185811	35	5.5	35	81	1	199	35	7	14	42	1.74
13185618--13185832	71	3.0	70	78	3	241	35	7	14	41	1.76
13187406--13187446	12	3.2	13	89	10	50	26	41	7	24	1.81
13187416--13187446	12	2.6	12	100	0	62	25	41	9	22	1.84
13189737--13189941	113	1.8	112	87	3	304	44	11	3	40	1.58
13189945--13189978	15	2.3	15	90	10	52	67	0	2	29	1.05
13194497--13194583	33	2.6	33	83	5	95	37	9	31	21	1.85
13194835--13194968	35	3.8	35	87	4	182	28	17	23	30	1.97
13195179--13195216	16	2.4	17	82	13	53	78	0	18	2	0.86
13195208--13195266	25	2.3	25	94	2	100	47	13	23	15	1.81
13244401--13244621	116	1.9	116	94	0	388	29	21	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13247355--13247392	19	2.0	19	94	0	67	42	28	2	26	1.69
13258716--13258757	21	2.0	21	90	0	66	35	19	19	26	1.95
13260320--13260358	20	2.0	20	85	10	53	43	5	23	28	1.75
13264486--13264545	30	2.1	29	84	6	77	31	6	20	41	1.78
13270007--13270285	140	2.0	139	97	0	513	36	20	10	33	1.86
13271367--13271478	58	1.9	58	90	0	179	37	19	8	33	1.83
13310216--13310240	13	1.9	13	100	0	50	48	8	0	44	1.32
13311474--13311518	19	2.3	20	96	3	83	46	24	2	26	1.64
13316654--13316713	29	2.1	29	100	0	120	28	10	20	41	1.84
13330258--13330434	73	2.4	73	80	9	175	20	22	18	38	1.93
13341851--13341950	38	2.5	40	87	6	143	24	19	35	22	1.96
13351076--13351241	78	2.1	77	89	1	260	36	13	8	41	1.74
13356638--13356747	37	3.0	37	78	0	103	27	10	35	26	1.90
13360584--13360637	28	2.0	27	89	10	83	31	18	16	33	1.93
13364932--13364978	15	3.1	15	84	0	58	51	17	2	29	1.57
13366355--13366379	13	1.9	13	100	0	50	48	8	0	44	1.32
13373099--13373144	20	2.3	20	96	0	83	28	4	21	45	1.71
13373191--13373247	28	2.0	28	83	12	73	29	21	24	24	1.99
13381328--13381373	20	2.3	20	96	0	83	28	4	21	45	1.71
13388266--13388312	21	2.2	20	78	10	58	14	21	6	57	1.60
13388271--13388311	21	1.9	22	90	5	66	17	24	7	51	1.70
13388532--13388591	28	2.1	28	81	0	66	35	20	15	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13388913--13388991	40	2.0	40	89	0	122	34	22	22	20	1.97
13394552--13394630	40	2.0	40	92	0	131	34	24	22	18	1.97
13394936--13394992	29	1.9	30	86	10	82	66	7	5	21	1.36
13394938--13395002	29	2.2	29	78	13	80	66	9	4	20	1.38
13401408--13401455	21	2.3	20	75	10	51	16	22	6	54	1.65
13401413--13401455	21	2.0	22	86	9	61	18	25	6	48	1.73
13409893--13409955	4	16.2	4	73	12	51	69	1	28	0	0.97
13409895--13409956	11	5.7	11	75	17	51	69	1	29	0	0.98
13425061--13425192	43	3.1	43	77	6	137	25	32	15	26	1.95
13438450--13438497	7	7.0	7	88	11	73	70	0	29	0	0.87
13438579--13438612	7	5.0	7	96	3	61	73	0	26	0	0.83
13438561--13438613	23	2.3	23	83	6	63	66	0	33	0	0.92
13439307--13439488	60	3.0	60	88	1	258	24	18	32	24	1.97
13441044--13441103	30	2.1	29	81	6	68	31	8	21	38	1.83
13451286--13451378	28	3.3	28	92	0	141	9	20	16	53	1.70
13451425--13451488	25	2.5	25	89	2	92	18	18	10	51	1.75
13451749--13451829	34	2.4	34	91	0	126	34	22	12	30	1.91
13458812--13458873	25	2.5	25	83	0	79	16	22	12	48	1.80
13458865--13458934	6	11.7	6	75	11	63	2	20	1	75	1.00
13458865--13458934	11	6.4	11	72	11	63	2	20	1	75	1.00
13459142--13459247	34	3.1	34	90	4	169	33	23	14	29	1.94
13459113--13459242	68	1.9	68	87	3	190	35	26	13	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13459403--13459450	25	1.9	25	83	8	62	25	20	6	47	1.73
13460229--13460271	20	2.2	20	83	8	52	46	4	2	46	1.36
13466752--13466937	55	3.4	55	78	4	178	14	13	30	41	1.85
13466966--13467052	23	3.7	23	82	4	102	24	21	32	21	1.98
13467033--13467114	31	2.6	31	88	3	112	26	18	23	31	1.97
13470631--13470668	19	2.0	19	100	0	76	42	31	0	26	1.56
13472702--13472746	15	3.0	15	84	12	65	55	20	2	22	1.54
13475373--13475418	19	2.4	19	88	3	65	41	28	2	28	1.68
13478818--13478842	13	1.9	13	100	0	50	48	8	0	44	1.32
13480213--13480250	19	2.0	19	94	0	67	42	28	0	28	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50