genome.fa.s8.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  37  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16240448--16240502	19	2.7	20	88	8	76	65	0	34	0	0.93
16240450--16240502	14	3.9	13	76	16	54	66	0	33	0	0.92
16243886--16243926	2	20.5	2	100	0	82	48	0	0	51	1.00
16243979--16244102	42	3.0	42	83	1	133	25	20	30	24	1.98
16244848--16244970	61	2.0	61	96	0	228	40	6	22	30	1.79
16254145--16254265	54	2.3	53	86	1	161	28	13	21	36	1.91
16256943--16257092	73	2.1	73	80	2	167	26	17	18	37	1.93
16260759--16260793	11	3.3	11	88	8	54	65	11	22	0	1.24
16264987--16265044	2	29.0	2	100	0	116	50	0	0	50	1.00
16265068--16265150	42	2.0	42	90	2	132	18	22	36	22	1.95
16265396--16265442	22	2.2	22	84	3	60	29	25	19	25	1.98
16266773--16266891	43	2.8	43	85	2	159	21	35	19	24	1.96
16267977--16268066	34	2.6	35	87	1	128	27	25	5	41	1.78
16269780--16269876	30	3.2	30	80	5	115	60	2	14	22	1.44
16269780--16269861	29	2.8	29	83	1	110	62	2	13	21	1.43
16269780--16269902	59	2.1	58	82	8	142	60	1	15	22	1.44
16273151--16273210	25	2.4	25	91	0	93	33	30	16	20	1.94
16273378--16273432	25	2.2	25	93	0	92	30	30	10	27	1.91
16275533--16275573	2	20.5	2	100	0	82	0	48	0	51	1.00
16276780--16276853	35	2.1	34	80	14	80	5	27	1	66	1.22
16284558--16284639	35	2.3	35	87	0	110	28	17	28	26	1.97
16284572--16284648	35	2.2	35	90	0	118	28	19	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16294321--16294379	28	2.2	28	81	6	68	40	8	13	37	1.75
16305547--16305571	12	2.1	12	100	0	50	48	8	16	28	1.74
16311396--16311575	79	2.3	79	88	3	256	29	13	20	36	1.91
16311396--16311651	79	3.2	78	80	6	241	29	13	19	37	1.91
16311701--16311812	31	3.7	31	73	13	90	55	4	16	23	1.60
16313582--16313610	15	2.0	15	93	6	51	68	6	0	24	1.13
16325152--16325185	16	2.0	18	88	11	54	50	17	5	26	1.69
16327127--16327160	12	2.7	13	90	9	61	76	0	0	23	0.79
16327129--16327160	4	7.8	4	93	6	55	78	0	0	21	0.76
16336218--16336248	15	2.1	14	94	5	53	0	9	0	90	0.46
16336218--16336248	11	2.8	11	95	0	53	0	9	0	90	0.46
16344857--16344905	24	2.0	24	92	0	80	48	22	18	10	1.77
16347968--16348005	20	1.9	20	88	0	58	31	5	21	42	1.75
16348906--16349048	28	5.0	27	81	11	128	36	13	9	41	1.76
16348895--16349045	59	2.6	57	81	6	169	39	12	7	40	1.72
16350884--16350921	19	2.0	19	94	0	67	28	0	28	42	1.56
16354057--16354095	21	1.9	20	84	5	51	35	12	12	38	1.82
16354265--16354293	15	1.9	15	100	0	58	34	13	20	31	1.92
16360434--16360478	18	2.3	21	85	11	60	51	2	2	44	1.26
16361553--16361590	19	2.0	19	100	0	76	42	31	0	26	1.56
16365114--16365217	54	1.9	54	96	2	183	30	10	9	48	1.70
16369282--16369380	23	4.5	22	75	19	77	64	0	34	1	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16369282--16369369	12	7.8	12	70	22	57	65	0	32	1	1.00
16369282--16369377	34	2.8	36	73	7	101	65	0	33	1	1.00
16369393--16369436	23	2.0	22	86	4	61	65	0	34	0	0.93
16369346--16369478	60	2.2	60	85	6	182	57	7	30	4	1.46
16370649--16370840	43	4.4	42	86	5	215	25	18	33	22	1.97
16372139--16372169	13	2.5	12	90	10	53	70	0	0	29	0.87
16387347--16387417	9	7.8	9	77	14	58	71	0	28	0	0.86
16387347--16387416	34	1.9	34	86	11	95	72	0	27	0	0.84
16387379--16387412	8	4.1	8	88	7	50	79	0	20	0	0.73
16387375--16387416	17	2.4	18	84	11	61	78	0	21	0	0.75
16389155--16389314	81	2.0	80	90	6	252	36	10	15	37	1.82
16402876--16402905	10	2.9	10	95	5	51	76	0	13	10	1.01
16403554--16403633	36	2.3	32	75	17	79	77	0	18	3	0.92
16403584--16403627	14	3.3	13	81	12	54	79	0	18	2	0.83
16404522--16404547	2	13.0	2	100	0	52	0	50	0	50	1.00
16404668--16404702	2	17.5	2	100	0	70	51	0	48	0	1.00
16406653--16406712	31	1.9	31	93	0	102	33	0	38	28	1.57
16409351--16409375	8	3.1	8	100	0	50	76	0	12	12	1.04
16411686--16411725	21	2.0	21	85	5	55	45	5	20	30	1.72
16413168--16413226	28	2.1	28	81	12	68	35	23	20	20	1.96
16414301--16414341	15	2.6	16	75	21	50	43	0	12	43	1.41
16418497--16418542	20	2.3	20	92	0	83	34	26	8	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16423515--16423555	2	20.0	2	87	5	55	51	4	0	43	1.23
16423516--16423555	21	1.9	21	89	0	62	52	5	0	42	1.23
16423518--16423554	19	1.9	19	88	0	56	51	5	0	43	1.24
16423584--16423788	42	4.9	42	89	1	295	23	33	22	20	1.97
16430433--16430568	63	2.2	63	82	0	155	44	18	14	22	1.86
16430458--16430626	63	2.7	62	80	7	180	44	18	13	22	1.85
16431045--16431114	36	1.9	36	85	0	95	31	10	25	32	1.89
16431150--16431229	28	2.9	27	83	3	88	30	10	26	33	1.89
16439904--16439944	21	2.1	19	86	9	55	60	9	0	29	1.28
16442790--16442815	2	13.0	2	100	0	52	50	0	50	0	1.00
16444461--16444500	21	2.0	20	85	5	53	20	7	2	70	1.24
16444463--16444532	33	2.1	32	80	12	79	18	7	1	72	1.14
16449697--16449794	19	5.1	19	63	11	56	22	40	16	20	1.91
16452203--16452234	2	16.0	2	93	0	55	53	46	0	0	1.00
16453671--16453750	40	2.0	41	92	2	135	40	26	17	16	1.90
16458477--16458514	2	18.5	2	94	5	67	47	2	0	50	1.15
16458924--16458976	25	2.1	25	85	0	70	22	20	33	22	1.97
16461560--16461635	29	2.6	29	82	4	89	48	18	7	25	1.74
16474549--16474668	58	2.1	57	95	1	213	36	15	9	38	1.80
16475921--16476358	180	2.4	179	85	2	603	36	12	14	37	1.83
16475921--16476409	180	2.7	177	81	6	576	36	12	14	36	1.84
16481762--16481787	10	2.6	10	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16482102--16482159	2	29.5	2	89	10	93	48	0	1	50	1.11
16494070--16494095	2	13.0	2	100	0	52	50	0	0	50	1.00
16498916--16498957	15	2.8	15	81	0	57	9	14	2	73	1.18
16498914--16498968	22	2.5	23	79	5	60	10	14	1	72	1.19
16508965--16509016	26	2.0	26	85	7	70	69	5	0	25	1.10
16510841--16510894	26	2.1	26	100	0	108	35	35	11	18	1.86
16512986--16513029	2	22.0	2	100	0	88	50	0	50	0	1.00
16513284--16513329	23	2.0	23	83	4	58	41	2	0	56	1.11
16513310--16513361	26	2.0	26	84	3	68	51	1	0	46	1.12
16519335--16519405	35	2.1	35	92	7	119	23	12	32	30	1.92
16521261--16521302	20	2.2	20	91	4	68	52	0	0	47	1.00
16531972--16532005	3	11.3	3	100	0	68	67	0	0	32	0.91
16531972--16532011	9	4.4	10	93	6	52	67	0	0	32	0.91
16533856--16533891	6	6.0	6	93	0	54	0	61	0	38	0.96
16533856--16533890	18	1.9	18	94	0	61	0	60	0	40	0.97
16536717--16536916	102	2.0	101	84	6	266	24	11	9	54	1.66
16545973--16546007	2	17.5	2	93	0	61	0	45	0	54	0.99
16551023--16551393	125	3.0	124	85	5	478	25	16	19	38	1.92
16551030--16551393	126	2.9	124	85	5	473	25	15	19	39	1.91
16551543--16551600	25	2.5	23	83	8	73	24	24	5	46	1.72
16552021--16552101	21	3.7	23	77	14	64	53	3	1	41	1.27
16558148--16558226	28	2.8	28	90	0	113	43	22	15	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16559883--16560005	22	5.8	22	83	5	119	48	13	2	34	1.56
16559869--16560003	6	22.8	6	73	14	93	48	14	2	34	1.55
16559867--16560005	10	13.7	10	77	8	129	48	13	2	35	1.55
16559859--16560063	10	20.5	10	81	0	113	44	9	5	39	1.62
16560108--16560191	42	2.0	42	90	0	132	25	34	20	20	1.96
16586941--16587123	91	2.0	91	92	0	303	34	21	12	31	1.90
16588265--16588304	15	2.7	15	92	0	62	82	0	5	12	0.82
16590648--16590900	26	9.5	25	68	17	86	52	3	2	41	1.30
16590828--16591029	48	4.3	47	69	21	152	53	2	2	41	1.29
16590834--16591051	52	4.5	51	67	26	150	53	2	3	40	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50