genome.fa.s8.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  20  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9372175--9372230	15	3.7	15	75	15	53	66	0	33	0	0.92
9375626--9375778	43	3.6	43	88	0	216	22	35	17	23	1.95
9384483--9384534	24	2.2	24	92	0	86	28	19	28	23	1.98
9396419--9396462	19	2.3	19	84	0	61	43	6	34	15	1.74
9398657--9398827	68	2.5	68	80	0	189	34	17	15	32	1.92
9403145--9403218	32	2.3	33	93	4	125	28	28	12	31	1.93
9404281--9404343	30	2.1	30	96	0	117	53	7	26	11	1.63
9408188--9408342	63	2.5	63	84	2	222	24	32	18	25	1.97
9412350--9412396	20	2.3	21	81	3	60	51	0	8	40	1.33
9414391--9414428	19	2.0	19	100	0	76	42	31	0	26	1.56
9417646--9417678	2	16.5	2	100	0	66	48	0	0	51	1.00
9418641--9418863	63	3.5	63	88	1	322	26	30	18	25	1.98
9424199--9424336	35	4.0	35	78	5	147	27	13	25	34	1.93
9424194--9424329	67	2.0	67	91	0	218	25	13	25	36	1.92
9432000--9432136	35	3.9	35	89	3	197	23	11	36	28	1.90
9437358--9437463	54	2.0	54	98	0	203	17	12	42	27	1.85
9444779--9444884	54	2.0	54	88	0	158	20	12	39	27	1.88
9448719--9448926	35	5.9	35	94	0	335	25	11	36	26	1.90
9455434--9455472	14	2.7	15	84	15	55	0	25	2	71	0.98
9458428--9458532	36	2.9	35	81	5	120	22	33	19	24	1.97
9464909--9465583	171	3.9	169	78	5	651	31	16	14	37	1.89
9465621--9466860	171	7.2	171	78	5	1067	33	14	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9465621--9466860	341	3.6	338	77	6	1143	33	14	15	37	1.88
9465621--9466700	512	2.1	510	80	5	1228	32	14	15	37	1.88
9466690--9466718	14	2.1	14	100	0	58	31	34	6	27	1.83
9468657--9468697	21	1.9	22	90	5	66	51	7	24	17	1.70
9468657--9468701	20	2.2	21	84	11	58	55	6	22	15	1.63
9468656--9468703	21	2.2	21	81	3	60	58	6	20	14	1.58
9470982--9471110	43	3.0	42	78	7	143	23	33	17	25	1.96
9471882--9471928	20	2.4	19	76	13	51	51	6	27	14	1.67
9478505--9478536	2	16.0	2	100	0	64	50	0	0	50	1.00
9478393--9478694	151	2.0	150	91	5	495	42	14	7	35	1.74
9478654--9478687	2	17.0	2	100	0	68	50	0	0	50	1.00
9478724--9478848	43	2.9	42	76	8	126	22	33	20	24	1.97
9480184--9481371	172	6.9	170	80	6	1166	33	14	14	37	1.87
9480033--9481321	344	3.8	341	79	8	1197	32	14	14	38	1.86
9481225--9481499	139	2.0	139	85	7	371	30	13	12	44	1.80
9481369--9481702	171	2.0	171	78	8	358	32	13	13	41	1.83
9486364--9486509	33	4.4	33	95	0	265	49	2	22	25	1.63
9497294--9497355	26	2.4	26	91	0	97	32	38	3	25	1.72
9497590--9497712	42	2.9	42	90	0	201	23	33	21	21	1.97
9501796--9501845	18	2.8	18	87	3	66	72	0	28	0	0.86
9501793--9501833	12	3.4	12	80	12	57	75	0	24	0	0.80
9501814--9502026	69	3.1	68	83	8	259	59	3	35	1	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9501943--9501977	16	2.1	16	89	5	52	74	0	25	0	0.82
9502526--9502674	60	2.5	60	91	0	226	28	18	28	24	1.98
9504263--9505420	171	6.8	171	77	5	1029	34	13	13	38	1.85
9504262--9505364	511	2.2	509	79	6	1210	33	12	13	39	1.84
9508738--9510237	171	8.8	169	80	4	1420	32	15	15	37	1.89
9508738--9510228	344	4.4	332	80	6	1418	32	15	15	37	1.89
9508738--9510237	515	2.9	505	79	6	1440	32	15	15	37	1.89
9511328--9512775	170	8.5	170	77	6	1317	32	14	14	37	1.88
9511319--9521206	341	29.2	337	76	8	5983	33	14	14	38	1.86
9512631--9512921	151	1.9	152	85	2	406	32	17	14	35	1.90
9512764--9514517	170	10.4	167	76	7	1281	32	13	14	39	1.85
9514554--9521190	171	39.0	170	76	6	5182	33	14	13	38	1.85
9516873--9516913	21	2.0	21	95	0	73	46	17	19	17	1.85
9524264--9524331	10	7.4	9	90	6	86	0	25	0	75	0.81
9524273--9524331	4	13.2	4	86	13	64	0	25	0	74	0.82
9524248--9524330	29	2.9	29	85	7	100	2	21	1	74	1.00
9524797--9527995	171	18.8	170	79	4	2886	33	14	14	38	1.86
9533734--9537725	512	7.8	508	78	5	3573	32	13	15	38	1.87
9533768--9537726	171	23.2	171	79	4	3558	32	13	15	38	1.87
9538866--9539341	171	2.8	169	82	5	553	32	12	14	39	1.85
9539197--9539482	145	2.0	145	83	4	362	35	12	12	38	1.82
9539340--9540905	170	9.4	162	74	12	755	32	13	15	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9539346--9539812	165	2.8	166	79	8	503	32	14	16	36	1.88
9540064--9540905	339	2.5	338	80	8	927	33	13	14	38	1.86
9539906--9540903	170	5.9	170	81	4	964	32	13	14	39	1.85
9542050--9542169	42	2.9	42	87	0	168	23	33	20	22	1.97
9542931--9542981	19	2.6	19	70	17	50	45	11	31	11	1.77
9543415--9546332	170	17.0	169	72	10	853	33	13	14	38	1.85
9543380--9546343	171	17.2	169	76	6	2310	33	13	14	38	1.86
9544996--9545040	20	2.2	20	96	0	81	40	0	6	53	1.27
9561192--9561232	20	2.0	20	90	0	64	41	0	19	39	1.52
9570428--9570468	21	1.9	22	90	5	66	51	7	24	17	1.70
9570428--9570472	20	2.2	21	84	11	58	55	6	22	15	1.63
9570426--9570473	21	2.3	20	79	10	60	56	6	22	14	1.61
9574966--9575022	22	2.6	22	85	0	69	26	26	21	26	1.99
9577737--9577808	29	2.4	30	74	4	74	23	29	19	27	1.98
9577659--9578147	115	4.3	115	87	2	655	26	29	19	24	1.99
9577825--9577922	29	3.3	29	77	8	90	27	27	21	23	1.99
9577659--9578147	229	2.1	230	86	4	666	26	29	19	24	1.99
9578056--9578127	31	2.3	31	82	0	81	29	27	19	23	1.98
9582806--9583408	31	19.5	31	91	0	882	39	18	17	25	1.92
9584061--9584100	3	13.3	3	100	0	80	67	0	0	32	0.91
9589240--9589291	25	2.1	25	100	0	104	30	5	17	46	1.71
9590483--9590535	24	2.2	24	82	0	61	24	56	3	15	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9596540--9596589	26	1.9	26	91	0	82	36	14	8	42	1.74
9598006--9598059	25	2.2	25	86	3	74	48	3	3	44	1.38
9602403--9602447	19	2.3	20	80	3	56	37	4	2	55	1.32
9607095--9607130	18	1.9	18	88	5	54	75	2	5	16	1.12
9612101--9612139	2	19.5	2	100	0	78	48	0	0	51	1.00
9615584--9615659	29	2.6	29	80	12	84	35	2	3	57	1.31
9618055--9618132	30	2.5	31	78	15	83	38	3	2	55	1.32
9619022--9619137	50	2.3	50	92	0	187	37	10	19	32	1.86
9622719--9623279	142	4.0	142	95	1	1020	40	16	13	28	1.87
9623238--9623401	85	1.9	85	87	0	238	38	16	18	26	1.92
9629200--9629455	129	2.0	127	89	1	395	23	18	29	28	1.98
9631342--9631410	33	2.0	35	83	5	88	2	20	1	75	1.01
9640968--9641012	22	2.0	22	86	0	63	33	11	15	40	1.83
9645796--9645837	22	1.9	22	90	9	68	38	11	16	33	1.86
9657550--9657583	17	2.0	17	88	0	50	44	2	0	52	1.16
9660475--9660513	13	3.0	13	85	10	53	76	0	23	0	0.78
9660717--9660756	20	2.0	21	95	5	73	60	0	40	0	0.97
9661406--9661642	60	4.0	60	88	1	352	26	18	31	23	1.98
9664304--9664346	20	2.2	20	82	0	50	20	16	16	46	1.84
9664301--9664575	73	3.8	72	83	5	272	22	19	19	38	1.94
9670729--9670777	1	49.0	1	100	0	98	0	0	0	100	0.00
9672815--9672917	38	2.6	39	86	6	129	23	17	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9674557--9674596	20	2.0	20	85	0	53	35	27	2	35	1.71
9677401--9677446	16	2.9	16	84	12	67	76	0	21	2	0.90
9677399--9677435	18	1.9	19	89	10	58	78	0	21	0	0.75
9678235--9678267	12	2.7	13	86	13	52	72	0	21	6	1.05
9678232--9678275	12	3.6	13	80	20	51	75	0	20	4	0.98
9679604--9680824	61	19.9	61	80	3	1173	36	18	17	27	1.94
9679611--9680824	123	9.9	121	80	4	1179	36	18	18	27	1.94
9679613--9680824	184	6.6	183	81	4	1195	36	18	18	27	1.94
9679906--9680321	62	6.8	61	77	9	226	38	19	16	25	1.92
9680704--9680800	30	3.2	30	76	12	108	34	19	20	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50