genome.fa.s8.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  5  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2637135--2637224	23	4.0	22	80	5	92	34	30	11	24	1.90
2637187--2637229	22	1.9	23	90	4	70	34	27	11	25	1.91
2637137--2637621	26	20.1	26	78	11	409	37	26	12	23	1.90
2637186--2637611	73	5.9	69	76	14	296	37	26	12	23	1.91
2637137--2637611	142	3.3	142	75	13	424	37	26	12	23	1.91
2637403--2637458	21	2.7	21	97	0	103	33	33	17	14	1.90
2637256--2637621	116	3.0	118	83	9	407	37	26	12	23	1.91
2637208--2637582	168	2.2	163	82	9	418	36	26	13	23	1.91
2637762--2637791	15	2.0	15	93	0	51	56	26	3	13	1.52
2644886--2645080	96	2.0	96	100	0	390	40	13	23	23	1.90
2648331--2648444	45	2.5	45	92	0	192	33	17	21	28	1.96
2648411--2648742	24	14.4	24	69	12	169	34	20	20	24	1.96
2648376--2648754	69	5.5	69	79	6	421	33	18	21	26	1.96
2648441--2648651	45	4.6	45	82	8	273	33	20	21	24	1.97
2648411--2648606	93	2.1	93	93	0	329	34	20	20	24	1.97
2648322--2648742	207	2.0	205	91	0	680	33	19	21	25	1.97
2648748--2648853	26	4.0	25	77	16	99	39	10	16	33	1.82
2654480--2654529	24	2.0	25	96	3	93	8	0	16	76	1.02
2659345--2659387	18	2.4	18	85	14	54	13	9	20	55	1.66
2663235--2663259	2	12.5	2	100	0	50	52	0	48	0	1.00
2681884--2681985	25	4.1	24	70	18	75	30	0	1	66	1.09
2681920--2681946	11	2.5	11	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2681883--2681993	36	2.9	40	76	15	101	30	0	1	66	1.08
2687228--2687268	16	2.5	17	84	8	57	60	2	0	36	1.10
2701709--2702006	153	1.9	153	87	4	431	25	21	19	33	1.97
2729118--2729162	15	2.9	15	83	6	54	68	0	2	28	1.01
2729207--2729285	27	2.8	28	81	14	76	51	0	1	46	1.08
2729229--2729285	29	1.9	29	86	10	80	56	0	1	42	1.10
2741938--2741972	15	2.5	15	90	9	56	71	0	5	22	1.07
2743706--2743737	2	16.0	2	100	0	64	50	0	0	50	1.00
2760950--2760993	16	2.8	16	78	0	52	4	20	2	72	1.13
2772200--2772226	2	13.5	2	100	0	54	51	0	0	48	1.00
2773589--2773619	15	2.1	15	93	0	53	22	0	6	70	1.09
2773743--2773876	73	1.9	71	85	8	186	39	4	11	44	1.62
2779474--2779500	3	9.0	3	100	0	54	0	33	0	66	0.92
2807972--2808009	17	2.2	18	86	13	53	26	2	0	71	1.00
2810073--2810117	2	23.0	2	95	4	83	48	0	0	51	1.00
2823427--2823572	69	2.1	70	87	5	208	28	21	23	26	1.99
2826304--2826368	31	2.1	31	100	0	130	32	32	9	26	1.88
2836003--2836045	2	21.5	2	87	0	59	51	4	0	44	1.22
2835999--2836043	22	2.0	22	95	0	81	53	6	0	40	1.27
2837627--2837665	18	2.2	18	90	9	62	64	0	0	35	0.94
2837884--2837930	20	2.3	21	81	3	60	44	4	4	46	1.42
2846391--2846435	2	22.5	2	90	0	63	48	0	46	4	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2876656--2876698	18	2.3	19	80	4	52	18	34	32	13	1.90
2876781--2876810	14	2.1	14	100	0	60	50	16	20	13	1.78
2880055--2880153	49	2.0	49	98	0	189	22	20	15	42	1.89
2880805--2880832	3	9.3	3	100	0	56	32	0	0	67	0.91
2881454--2881496	15	2.9	15	85	0	59	37	20	23	18	1.94
2882873--2882902	14	2.1	14	93	0	51	40	0	33	26	1.57
2916077--2916225	67	2.2	67	98	0	289	25	16	20	36	1.94
2927855--2927891	2	18.5	2	100	0	74	48	0	0	51	1.00
2941303--2941328	2	13.0	2	100	0	52	50	0	0	50	1.00
2942290--2942337	2	25.5	2	87	12	75	45	0	0	54	0.99
2942342--2942392	2	26.5	2	84	7	70	45	1	50	1	1.24
2942342--2942386	19	2.4	19	96	0	81	46	2	51	0	1.13
2942342--2942392	21	2.5	20	87	6	68	45	1	50	1	1.24
2950806--2950943	66	2.1	66	94	0	240	39	18	25	16	1.91
2959624--2959649	2	13.0	2	100	0	52	50	0	0	50	1.00
2961014--2961039	6	4.3	6	100	0	52	0	84	15	0	0.62
2965220--2965305	45	1.9	45	85	0	118	33	15	18	32	1.92
2965219--2965314	45	2.1	46	80	5	115	32	17	17	32	1.94
2965401--2965464	29	2.2	29	88	0	92	48	12	6	32	1.66
2965608--2965664	19	3.0	19	89	0	87	47	17	0	35	1.48
2968325--2968360	6	6.0	6	96	0	54	0	0	77	22	0.76
2968452--2968480	3	9.7	3	100	0	58	0	0	68	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2968338--2968477	57	2.5	57	86	2	201	9	7	57	26	1.56
2969814--2969843	2	15.0	2	92	0	51	46	0	3	50	1.18
2970807--2970831	2	12.5	2	100	0	50	48	0	0	52	1.00
2978063--2978127	20	3.2	20	76	10	60	73	3	1	21	1.05
2978055--2978117	28	2.2	28	80	5	74	71	4	3	20	1.18
2983932--2983975	22	2.0	22	86	0	61	65	0	0	34	0.93
2984372--2984411	17	2.6	15	85	14	55	75	0	2	22	0.93
2984373--2984407	17	2.1	17	94	0	61	74	0	2	22	0.95
2984350--2984403	23	2.3	23	84	6	74	75	1	3	18	1.03
2988778--2988811	10	3.3	10	84	8	50	58	35	5	0	1.22
2991388--2991431	16	2.8	16	83	10	54	40	4	13	40	1.65
2991463--2991547	3	27.7	3	70	15	50	27	5	0	67	1.14
2991931--2991965	14	2.6	13	86	8	52	22	2	0	74	0.95
2992318--2992412	49	2.0	47	82	12	113	16	3	6	73	1.17
2992376--2992413	16	2.5	15	87	8	58	18	0	2	78	0.86
2993041--2993112	36	2.0	37	86	2	101	13	31	23	30	1.94
2993032--2993249	104	2.1	104	89	1	330	13	33	23	29	1.93
2993549--2993637	35	2.5	35	85	0	133	12	37	30	20	1.89
2997281--2997313	11	3.1	11	86	8	50	54	36	9	0	1.32
2997874--2997944	23	3.2	22	84	8	81	33	29	12	23	1.92
2997883--2997944	21	2.8	23	87	4	92	35	30	12	20	1.91
2997934--2998022	22	4.0	22	82	8	110	46	22	7	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2998122--2998245	60	2.1	60	83	3	151	41	16	9	33	1.81
3005080--3005250	84	2.0	84	98	0	333	36	19	18	26	1.94
3012051--3012076	2	13.0	2	100	0	52	50	0	50	0	1.00
3012925--3012975	6	8.5	6	100	0	102	50	0	49	0	1.00
3016883--3016922	19	2.1	19	100	0	80	35	12	20	32	1.90
3023920--3023952	17	1.9	17	88	11	50	66	18	3	12	1.36
3024113--3024170	18	3.2	18	77	0	71	46	18	8	25	1.78
3025928--3025975	25	1.9	25	82	0	60	39	2	2	56	1.23
3033624--3033732	56	1.9	56	84	1	146	46	18	5	29	1.71
3036677--3036708	2	16.0	2	100	0	64	50	0	0	50	1.00
3040814--3040978	77	2.1	77	83	4	208	42	10	6	41	1.63
3043260--3043315	22	2.5	23	85	8	71	39	0	0	60	0.97
3043272--3043320	24	2.2	22	82	10	55	40	0	0	59	0.98
3047219--3047861	323	2.0	321	99	0	1252	49	9	7	33	1.63
3068728--3068755	2	14.0	2	100	0	56	50	0	50	0	1.00
3073767--3073805	20	2.0	19	100	0	69	71	10	5	10	1.24
3073895--3073931	8	4.4	9	83	16	53	0	18	0	81	0.70
3074074--3074117	20	2.2	20	91	0	70	36	11	18	34	1.86
3074080--3074123	20	2.2	20	83	0	52	40	15	13	29	1.86
3076932--3076962	6	5.2	6	96	0	53	16	67	3	12	1.35
3086298--3086382	41	2.0	42	93	2	145	38	14	31	15	1.87
3088583--3088607	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3100470--3100503	3	11.3	3	100	0	68	67	0	0	32	0.91
3106575--3106781	69	3.0	70	82	5	242	38	26	9	25	1.86
3106606--3106781	70	2.5	68	81	5	201	38	27	7	26	1.84
3109760--3109800	18	2.4	17	91	4	64	17	21	12	48	1.79
3114658--3114705	21	2.3	21	82	10	55	60	4	4	31	1.35
3116311--3116344	2	17.0	2	87	0	50	44	0	5	50	1.26
3125311--3125349	14	2.9	14	88	3	53	87	5	7	0	0.68
3129339--3129402	4	16.0	4	78	0	56	42	3	51	3	1.33
3129339--3129402	6	10.7	6	77	0	56	42	3	51	3	1.33
3139722--3139759	2	19.0	2	94	0	67	2	0	50	47	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50