genome.fa.s8.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  36  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15892253--15892299	2	23.5	2	79	16	53	51	2	2	44	1.25
15901844--15901892	24	2.0	24	96	0	89	26	16	26	30	1.97
15902360--15902408	25	2.0	25	91	0	80	48	6	22	22	1.72
15905082--15905139	29	2.0	29	86	0	80	58	0	3	37	1.15
15918876--15918973	38	2.6	38	85	4	128	38	15	10	35	1.81
15921265--15921313	21	2.3	22	82	13	66	20	26	4	48	1.67
15926358--15926399	16	2.5	17	88	3	59	19	2	7	71	1.20
15926571--15926643	21	3.5	21	79	3	85	32	12	15	39	1.84
15930421--15930450	2	15.0	2	100	0	60	50	0	0	50	1.00
15931062--15931086	2	12.5	2	100	0	50	48	0	0	52	1.00
15955685--15955738	28	2.0	27	88	3	81	33	18	22	25	1.97
15960141--15960171	2	15.5	2	100	0	62	48	0	0	51	1.00
15960345--15960405	22	2.9	20	76	13	61	72	1	0	26	0.94
15960334--15960383	26	1.9	26	88	8	75	70	2	0	28	0.99
15960332--15960405	26	3.0	25	74	20	66	70	1	0	28	0.96
15960334--15960398	13	5.4	13	75	16	52	69	1	0	29	0.98
15961719--15961755	5	7.6	5	91	8	51	78	0	2	18	0.87
15962086--15962114	13	2.1	14	93	6	51	72	0	6	20	1.07
15966554--15966578	13	1.9	13	100	0	50	48	8	0	44	1.32
15968991--15969043	27	2.0	26	85	7	70	60	15	1	22	1.44
15973605--15973712	31	3.5	30	90	6	171	44	24	8	23	1.80
15976139--15976173	18	2.0	17	88	5	52	42	2	0	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15987702--15987731	8	3.6	8	95	4	51	43	0	0	56	0.99
15987847--15987882	18	2.0	18	88	0	54	36	8	19	36	1.82
15989336--15989377	2	21.0	2	100	0	84	50	0	0	50	1.00
15990396--15990448	26	2.0	27	85	3	72	28	1	7	62	1.33
15993514--15993562	25	2.0	24	88	4	71	12	4	12	71	1.28
15993508--15993552	19	2.3	21	85	11	60	15	2	13	68	1.30
15995678--15995715	19	2.0	19	94	0	67	26	2	31	39	1.70
16006569--16006668	36	2.8	36	81	3	121	29	31	21	19	1.97
16008680--16008732	28	1.9	27	84	3	70	39	20	15	24	1.91
16016148--16016178	2	15.5	2	100	0	62	51	0	48	0	1.00
16017904--16018081	28	6.2	28	83	6	214	34	12	11	41	1.80
16017904--16018081	86	2.1	86	85	6	236	34	12	11	41	1.80
16017914--16018080	58	2.9	56	81	9	203	36	12	11	38	1.80
16021631--16021736	29	3.7	29	85	2	142	41	12	9	36	1.75
16030912--16031041	42	3.1	42	70	11	95	33	20	14	31	1.93
16031711--16031749	21	1.9	20	84	5	51	38	17	17	25	1.92
16034322--16034358	19	1.9	19	94	0	65	43	27	2	27	1.68
16039646--16039772	35	3.8	32	78	13	130	35	27	12	24	1.92
16039617--16039792	67	2.6	67	88	3	248	35	27	12	25	1.92
16039664--16039772	35	3.2	33	79	12	132	32	27	12	27	1.93
16041433--16041511	25	3.2	24	79	13	88	68	12	3	15	1.34
16042679--16042708	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16043658--16043692	2	17.5	2	93	0	61	51	45	0	2	1.16
16043654--16043698	10	4.7	10	83	10	58	51	40	0	8	1.33
16056070--16056206	28	4.8	29	78	11	140	42	8	12	36	1.74
16056070--16056195	57	2.2	58	82	4	148	40	8	11	38	1.73
16058782--16058859	31	2.5	32	78	12	83	65	6	3	24	1.33
16061279--16061303	13	1.9	13	100	0	50	48	8	0	44	1.32
16061945--16062093	75	2.0	74	98	0	280	44	13	15	25	1.83
16063209--16063362	35	4.4	35	89	0	200	29	31	9	29	1.89
16088549--16088616	21	3.2	21	81	6	75	38	13	20	27	1.90
16091591--16091644	20	2.7	20	75	16	58	66	0	1	31	1.02
16091586--16091642	26	2.1	28	87	6	82	68	0	1	29	1.00
16092525--16092971	189	2.4	189	80	6	424	33	17	20	28	1.95
16094051--16094088	3	12.7	3	94	0	67	36	0	28	34	1.58
16102105--16102248	74	1.9	74	87	0	207	43	15	17	22	1.87
16104470--16104624	71	2.2	71	100	0	310	37	17	12	32	1.88
16121912--16121958	24	2.0	24	91	0	76	36	19	23	21	1.95
16123161--16123372	111	1.9	111	88	1	318	45	28	9	16	1.79
16123237--16123539	152	2.0	151	99	0	588	41	29	10	18	1.83
16123396--16124057	111	6.0	111	87	1	916	44	27	10	17	1.81
16123161--16123650	263	1.9	262	86	2	707	44	27	10	17	1.81
16125323--16125354	15	2.1	15	94	0	55	37	15	12	34	1.85
16125282--16125535	102	2.5	103	89	4	372	37	24	12	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16133168--16133210	18	2.4	18	88	0	59	0	27	23	48	1.51
16133611--16133681	35	2.0	35	94	0	124	49	12	2	35	1.56
16141608--16141649	2	21.0	2	100	0	84	50	50	0	0	1.00
16142362--16142418	21	2.7	21	100	0	114	38	10	14	36	1.80
16144523--16144560	18	2.1	18	90	9	60	73	0	0	26	0.83
16144520--16144560	21	2.0	20	85	4	55	73	0	0	26	0.84
16146078--16146109	2	16.0	2	93	0	55	46	0	3	50	1.17
16149199--16149290	47	2.0	47	88	0	139	47	17	6	28	1.72
16152182--16152267	42	2.0	42	95	0	154	36	15	15	33	1.88
16153826--16153877	23	2.2	25	89	6	81	48	1	0	50	1.12
16158258--16158403	31	4.7	31	73	8	118	50	25	9	14	1.73
16158356--16158442	29	2.9	29	75	10	70	54	21	3	20	1.60
16160717--16160755	10	3.8	10	80	6	51	25	2	20	51	1.60
16163678--16163730	28	1.9	27	88	3	79	33	15	20	30	1.93
16163678--16163737	28	2.1	28	84	6	77	33	16	21	28	1.95
16167521--16167596	35	2.2	35	85	4	109	10	36	2	50	1.51
16168068--16168128	2	30.5	2	88	6	88	50	1	0	45	1.11
16169906--16170200	36	7.8	35	72	15	214	40	18	15	24	1.90
16169897--16170230	76	4.4	76	86	0	452	40	18	15	24	1.90
16174732--16174791	21	2.9	21	89	0	93	38	20	15	26	1.91
16178947--16178993	19	2.5	19	82	6	51	57	0	4	38	1.18
16179401--16179438	20	1.9	20	100	0	76	28	5	21	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16179401--16179446	20	2.3	20	92	0	74	28	4	23	43	1.73
16179792--16179827	19	1.9	19	88	5	56	63	5	16	13	1.47
16180662--16180686	13	1.9	13	100	0	50	44	0	8	48	1.32
16182544--16182591	2	24.0	2	100	0	96	50	50	0	0	1.00
16182591--16182630	2	20.0	2	100	0	80	50	0	0	50	1.00
16188317--16188371	25	2.2	26	90	3	85	32	9	16	41	1.80
16188297--16188363	25	2.7	26	88	4	93	37	8	16	37	1.80
16188338--16188409	37	2.0	36	86	2	99	33	12	12	41	1.80
16191574--16191620	21	2.2	21	88	0	67	34	23	19	23	1.97
16192107--16192144	16	2.4	16	87	12	53	18	0	2	78	0.86
16192245--16192307	15	4.1	15	76	9	65	61	7	1	28	1.33
16192615--16192683	8	8.6	8	85	0	93	28	47	0	23	1.52
16192607--16192683	16	4.9	16	83	1	93	28	46	0	24	1.53
16192615--16192683	24	2.9	24	100	0	138	28	47	0	23	1.52
16192686--16192752	27	2.6	24	80	15	71	19	7	1	71	1.17
16201536--16201582	26	1.9	24	87	12	69	25	0	4	70	1.05
16201677--16202085	203	2.0	203	99	0	809	35	21	16	27	1.94
16204699--16205132	201	2.2	201	85	2	593	35	23	12	29	1.91
16205767--16206215	23	19.5	23	76	3	386	20	33	11	34	1.89
16206143--16206242	46	2.2	46	85	0	128	25	35	9	31	1.87
16212009--16212067	21	2.8	22	75	21	63	32	23	23	20	1.98
16212995--16213028	11	3.0	11	87	8	50	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16213218--16213263	22	2.0	23	84	12	60	28	34	13	23	1.92
16219248--16219290	13	3.2	13	78	21	52	48	2	0	48	1.14
16219251--16219291	21	2.0	21	85	9	57	48	2	0	48	1.14
16219254--16219290	14	2.6	15	83	12	51	45	2	0	51	1.15
16221964--16222038	27	2.8	27	79	4	80	54	0	8	37	1.30
16222299--16222350	24	2.3	22	80	6	59	42	0	1	55	1.10
16222430--16222521	17	5.7	16	65	28	52	47	1	2	48	1.20
16228668--16228786	37	3.2	37	92	0	211	28	9	38	23	1.86
16229074--16229176	22	4.7	22	85	0	134	29	21	24	25	1.99
16234301--16234340	19	2.0	20	85	4	55	57	2	12	27	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50