genome.fa.s8.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  35  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15523400--15523496	4	24.2	4	82	0	77	0	13	50	36	1.42
15531230--15531384	77	2.0	77	96	0	283	32	25	9	32	1.88
15532878--15532937	28	2.1	28	100	0	120	20	10	25	45	1.81
15551785--15551846	21	3.0	21	74	9	72	32	0	29	38	1.57
15553462--15553515	25	2.2	25	83	6	65	48	3	1	46	1.30
15553835--15553875	22	2.0	21	85	9	57	46	2	0	51	1.14
15553974--15554029	18	3.3	17	78	11	62	64	0	0	35	0.94
15565276--15565319	20	2.1	22	87	8	65	52	0	0	47	1.00
15565601--15565636	6	6.0	6	96	0	63	52	47	0	0	1.00
15570113--15570191	41	1.9	41	92	0	131	44	18	5	31	1.72
15574719--15574769	21	2.2	24	86	10	72	3	19	0	76	0.94
15586533--15586601	29	2.3	30	90	7	106	37	2	0	59	1.12
15591454--15591503	2	25.0	2	100	0	100	50	0	0	50	1.00
15592211--15592273	33	1.9	33	93	0	108	36	14	7	41	1.75
15592351--15592425	30	2.5	30	82	4	89	50	12	10	26	1.72
15616368--15616406	16	2.4	16	87	8	53	76	0	2	20	0.90
15617035--15617070	16	2.2	16	90	9	56	80	0	19	0	0.71
15617063--15617112	25	2.0	24	85	11	66	44	16	28	12	1.83
15617079--15617133	25	2.2	26	78	12	62	43	18	29	9	1.80
15618192--15618241	2	26.5	2	88	11	79	50	0	0	50	1.00
15618198--15618241	17	2.6	17	96	0	79	50	0	0	50	1.00
15618192--15618241	19	2.6	19	96	0	91	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15624351--15624383	17	1.9	17	88	11	50	42	0	9	48	1.35
15625734--15625803	32	2.2	32	84	0	86	24	35	27	12	1.92
15639330--15639390	24	2.4	26	74	15	65	37	1	9	50	1.45
15639625--15639739	18	6.7	18	71	17	68	46	3	5	44	1.42
15639759--15639802	16	2.6	17	85	3	54	34	9	13	43	1.76
15639838--15639868	16	1.9	16	93	0	53	61	3	3	32	1.28
15649930--15649961	3	10.3	3	93	6	55	68	0	0	31	0.90
15661025--15661152	60	2.2	60	88	1	195	47	6	8	37	1.59
15663143--15663186	18	2.4	18	96	0	79	36	27	11	25	1.90
15667821--15667867	17	2.8	17	78	18	53	80	4	0	14	0.85
15667830--15667867	19	2.0	19	85	10	51	81	2	0	15	0.80
15668379--15668439	8	7.6	8	75	17	56	73	1	0	24	0.92
15668379--15668436	21	2.7	21	78	7	64	74	1	0	24	0.92
15668378--15668437	15	3.8	15	81	16	68	73	1	0	25	0.93
15668005--15668435	214	2.0	214	79	6	471	41	10	15	32	1.81
15668687--15668758	23	2.9	24	74	13	65	43	2	0	54	1.15
15672500--15672545	16	2.9	16	83	0	56	10	34	0	54	1.36
15673809--15673854	2	23.0	2	100	0	92	0	50	0	50	1.00
15673883--15673934	2	25.5	2	96	3	95	1	50	0	48	1.12
15674666--15674746	33	2.5	33	100	0	162	48	4	7	39	1.53
15676294--15676334	19	2.2	19	95	0	73	31	12	17	39	1.86
15680723--15680868	40	3.6	40	80	0	166	58	15	1	24	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15680765--15680822	20	2.9	19	78	16	73	56	13	0	29	1.38
15681290--15681322	16	2.1	17	88	11	52	39	0	6	54	1.25
15685547--15685590	2	22.0	2	90	0	70	0	4	50	45	1.22
15698417--15698474	18	3.2	18	88	9	75	55	0	1	43	1.10
15698425--15698463	2	20.5	2	89	10	64	53	0	0	46	1.00
15698932--15698965	17	2.1	16	88	5	50	41	0	0	58	0.98
15700041--15700087	7	6.9	7	78	11	53	82	0	4	12	0.80
15700041--15700087	13	3.4	14	77	14	53	82	0	4	12	0.80
15700052--15700088	19	1.9	19	94	0	65	83	0	2	13	0.74
15703630--15703705	40	1.9	40	94	0	134	35	26	19	18	1.95
15706404--15706481	40	2.0	40	92	0	129	37	23	20	19	1.95
15713469--15713525	18	3.2	18	72	2	62	28	8	17	45	1.78
15717125--15717149	5	5.0	5	100	0	50	0	80	0	20	0.72
15727864--15729097	42	29.2	42	76	8	583	15	30	9	44	1.79
15727881--15728609	84	8.7	83	77	8	647	16	27	11	44	1.83
15727902--15728625	126	5.8	126	82	4	746	16	27	11	44	1.82
15728604--15728690	45	1.9	46	88	6	133	12	36	8	42	1.73
15740435--15740472	19	2.0	19	89	0	58	47	0	0	52	1.00
15744498--15744553	29	2.0	28	96	0	94	28	7	17	44	1.75
15744563--15744607	2	23.0	2	95	4	83	51	0	0	48	1.00
15744993--15745040	26	1.9	25	83	8	62	64	0	29	6	1.18
15744933--15745245	167	1.8	174	83	7	428	46	7	17	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15745428--15745563	53	2.5	56	78	8	147	31	12	9	46	1.74
15745569--15745662	29	3.4	27	82	7	100	32	9	10	46	1.71
15745433--15745662	27	8.5	28	74	13	128	32	12	10	45	1.74
15745596--15745674	26	3.0	27	79	17	85	29	10	12	48	1.74
15745588--15745684	29	3.5	29	76	17	82	31	9	10	48	1.69
15768930--15768960	16	1.9	16	100	0	62	22	0	0	77	0.77
15770442--15770616	13	13.3	12	67	17	82	28	1	0	70	0.95
15770439--15770522	33	2.5	33	88	5	116	29	1	0	69	0.97
15770463--15770627	40	4.0	40	75	16	156	30	0	0	69	0.94
15770548--15770623	7	10.1	7	79	9	53	25	0	0	75	0.81
15770498--15770616	52	2.3	51	85	10	152	29	0	0	69	0.94
15770548--15770630	31	2.5	35	85	11	106	27	0	0	72	0.85
15770812--15770881	32	2.2	33	84	10	99	28	1	1	68	1.06
15770812--15770862	24	2.1	25	85	10	70	27	1	1	68	1.11
15770538--15771056	265	2.0	265	89	2	810	35	6	10	48	1.62
15771278--15771310	2	16.0	2	93	6	57	48	3	0	48	1.17
15777600--15777678	25	3.1	25	76	16	74	45	0	3	50	1.19
15777660--15777732	31	2.4	30	77	8	76	60	0	0	39	0.97
15778023--15778049	5	5.4	5	100	0	54	18	18	18	44	1.87
15783232--15783291	16	3.8	16	88	2	86	56	20	10	13	1.65
15787054--15787117	28	2.3	28	86	0	83	46	7	4	40	1.53
15787087--15787129	16	2.4	17	85	14	52	46	6	4	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15794290--15794328	2	20.0	2	89	5	62	46	2	0	51	1.14
15794368--15794418	2	26.0	2	96	4	95	49	0	0	50	1.00
15794290--15794456	90	1.9	89	98	0	316	42	5	4	46	1.47
15796086--15796145	16	3.8	15	79	16	59	75	1	1	21	0.99
15796089--15796135	13	3.8	12	75	13	51	76	2	2	19	0.99
15797034--15797084	24	2.1	24	92	0	84	45	5	35	13	1.68
15800110--15800217	39	2.7	38	79	13	117	48	2	1	47	1.27
15800164--15800225	16	3.9	16	73	12	56	43	3	1	51	1.27
15800569--15800616	25	1.9	25	91	8	80	54	0	0	45	0.99
15800513--15800626	40	2.8	41	85	5	142	53	0	1	43	1.17
15800538--15800626	15	6.6	14	71	23	66	53	0	1	44	1.07
15800608--15800660	27	2.0	26	85	3	70	45	0	7	47	1.31
15802583--15802653	30	2.4	30	76	9	81	35	14	4	46	1.64
15802711--15802788	33	2.4	33	78	8	104	38	2	15	43	1.60
15809678--15809732	24	2.2	25	84	12	69	12	7	14	65	1.46
15810171--15810238	8	8.4	8	71	20	52	50	1	0	48	1.10
15817088--15817137	16	3.1	16	72	18	50	22	4	4	70	1.21
15820559--15820621	32	2.0	32	84	3	83	57	1	30	11	1.43
15825597--15825647	28	1.9	27	88	11	79	35	0	1	62	1.06
15825606--15825659	28	1.9	28	85	7	74	35	5	1	57	1.33
15827979--15828035	30	1.9	30	85	7	80	42	10	1	45	1.49
15836326--15836388	33	1.9	33	100	0	126	34	11	20	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15857583--15857627	2	22.5	2	100	0	90	51	48	0	0	1.00
15857752--15857782	2	15.5	2	100	0	62	48	0	0	51	1.00
15864058--15864082	13	1.9	13	100	0	50	44	0	8	48	1.32
15872830--15873029	100	2.0	100	87	0	283	24	15	13	47	1.80
15884003--15884041	18	2.0	20	85	9	55	23	15	33	28	1.95
15890240--15890264	2	12.5	2	100	0	50	52	48	0	0	1.00
15891711--15891760	2	27.0	2	80	15	54	46	0	0	54	1.00
15891711--15891760	15	3.1	17	86	11	70	46	0	0	54	1.00
15892028--15892078	2	27.0	2	80	11	63	49	1	0	49	1.12
15892012--15892067	26	2.2	25	84	9	69	50	1	3	44	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50