genome.fa.s8.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  27  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12000293--12000493	35	5.9	35	71	16	113	33	25	13	27	1.94
12000351--12000493	35	4.3	33	75	11	130	34	25	13	25	1.93
12000312--12000498	67	2.8	67	87	4	272	34	26	13	25	1.93
12000332--12000501	32	5.1	32	69	16	114	35	25	14	24	1.93
12000647--12000689	20	2.2	20	83	8	52	23	4	6	65	1.37
12002299--12002495	73	2.7	73	78	9	188	21	15	18	44	1.87
12004722--12004773	26	2.0	26	100	0	104	23	19	11	46	1.82
12007203--12007247	21	2.2	20	84	4	54	28	15	6	48	1.70
12007474--12007558	2	42.5	2	96	0	89	50	9	0	38	1.35
12017097--12017152	29	1.9	29	88	0	85	23	14	16	46	1.83
12029253--12029296	22	2.0	22	90	0	70	34	9	18	38	1.82
12041538--12041642	38	2.7	39	85	4	140	23	19	21	35	1.96
12048948--12048980	2	16.5	2	93	0	57	45	0	3	51	1.16
12057438--12057669	61	3.8	61	91	2	349	26	31	17	24	1.97
12062663--12062762	39	2.5	40	79	4	114	31	37	12	20	1.89
12064164--12064330	35	4.8	34	80	6	167	31	25	4	38	1.75
12064163--12064352	35	5.5	35	75	6	156	30	25	4	40	1.74
12064163--12064330	70	2.4	68	86	3	221	30	25	4	39	1.75
12070459--12070601	35	4.1	35	88	0	207	25	9	37	28	1.86
12070459--12070629	35	4.9	33	84	3	148	24	11	35	28	1.90
12070476--12070629	70	2.2	70	82	5	188	25	11	35	27	1.91
12072704--12072876	27	6.5	27	77	4	136	34	20	4	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12072661--12072875	81	2.7	78	79	6	234	35	19	3	41	1.69
12072679--12072876	54	3.7	52	76	9	150	35	19	4	40	1.71
12072772--12072844	24	3.0	22	74	23	58	34	20	1	43	1.60
12072859--12072922	27	2.4	27	86	5	85	42	17	3	37	1.65
12072679--12072895	78	2.7	79	79	9	194	36	19	3	40	1.70
12073118--12073160	2	23.5	2	82	17	58	48	0	0	51	1.00
12073223--12073261	2	19.5	2	100	0	78	48	0	0	51	1.00
12076456--12076574	60	2.0	60	85	3	159	29	22	18	29	1.97
12076912--12077037	43	2.9	43	80	3	164	20	36	19	23	1.95
12077444--12077496	26	2.0	26	92	7	90	49	20	7	22	1.74
12080163--12080205	19	2.3	19	80	8	52	76	2	20	0	0.89
12080163--12080224	20	3.1	19	77	9	52	77	1	20	0	0.85
12080190--12080223	15	2.3	15	89	0	50	82	0	17	0	0.67
12080264--12080328	4	17.0	4	74	17	50	72	0	26	1	0.94
12080264--12080330	19	3.5	20	72	24	65	71	0	26	1	0.94
12080397--12080432	18	2.0	18	94	0	63	75	0	25	0	0.81
12080522--12080564	23	2.0	22	86	13	63	69	0	30	0	0.88
12080837--12080868	2	16.0	2	93	0	55	50	3	0	46	1.17
12081260--12081487	60	3.8	59	87	2	287	27	17	32	22	1.96
12084011--12084063	28	1.9	27	88	3	79	26	18	20	33	1.96
12084116--12084153	20	1.9	20	100	0	76	44	21	5	28	1.73
12086285--12086327	17	2.7	15	82	10	50	25	0	11	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12091716--12091754	19	2.1	19	86	13	55	15	20	30	33	1.94
12091886--12091928	22	2.0	21	81	4	50	23	27	18	30	1.98
12091877--12092023	61	2.4	62	80	5	156	28	18	23	29	1.97
12095526--12095555	16	1.9	15	93	6	51	20	3	16	60	1.50
12096794--12097047	68	3.8	66	82	3	267	36	9	18	35	1.84
12097170--12097238	31	2.3	31	80	10	79	28	21	28	20	1.98
12100397--12100434	20	2.0	20	89	5	60	42	10	13	34	1.78
12101070--12101130	19	3.1	19	68	9	59	22	37	16	22	1.93
12101070--12101202	40	3.5	38	76	10	103	23	38	17	21	1.93
12102768--12102874	38	2.7	40	82	4	137	24	35	16	23	1.95
12119725--12119820	39	2.5	39	91	0	147	22	13	38	25	1.91
12120593--12120646	2	27.0	2	100	0	108	50	0	0	50	1.00
12125564--12125589	10	2.6	10	100	0	52	0	53	0	46	1.00
12131940--12131992	23	2.2	24	84	15	67	67	13	11	7	1.40
12142816--12142961	41	3.6	41	80	7	158	23	16	36	23	1.94
12143473--12143532	30	2.1	29	81	6	68	31	8	21	38	1.83
12153589--12153744	54	2.9	54	86	0	222	21	17	38	21	1.93
12162389--12162507	37	3.2	36	85	2	148	28	10	36	24	1.88
12162401--12162510	37	3.0	37	87	0	166	28	10	38	22	1.88
12166596--12166644	8	6.2	8	88	2	55	48	6	2	42	1.39
12166602--12166640	2	19.5	2	89	0	60	48	2	2	46	1.29
12167572--12167614	21	2.0	21	90	0	68	46	6	30	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12184629--12184671	21	2.0	21	95	0	77	51	9	25	13	1.71
12188413--12188450	19	2.0	20	89	5	60	36	13	26	23	1.91
12206650--12206692	23	1.9	22	90	0	59	41	20	13	23	1.88
12208532--12208663	43	3.1	43	78	0	138	27	18	33	20	1.96
12215535--12215574	21	1.9	21	89	0	62	30	12	12	45	1.79
12231592--12231697	32	3.2	32	77	12	124	35	27	12	24	1.91
12231592--12231717	32	3.8	33	73	15	98	34	26	12	26	1.92
12231555--12231739	67	2.8	67	86	2	239	35	27	13	23	1.93
12231545--12231758	67	3.2	67	82	5	184	34	27	13	25	1.93
12232147--12232307	73	2.2	72	80	8	175	23	19	16	40	1.91
12239173--12239283	32	3.4	32	72	11	107	33	27	12	26	1.92
12239134--12239318	35	5.5	34	70	10	119	33	25	12	27	1.93
12239134--12239321	67	2.8	67	83	3	236	34	26	12	27	1.92
12241706--12241748	17	2.7	15	82	10	50	25	0	11	62	1.29
12241745--12241784	20	2.0	21	90	5	64	20	2	7	70	1.24
12255580--12255682	35	2.9	35	83	0	134	46	19	12	21	1.83
12255666--12255706	20	2.0	20	90	0	64	46	17	12	24	1.82
12255727--12255941	111	1.9	111	98	0	412	36	16	17	29	1.92
12256032--12256100	29	2.4	29	80	0	84	20	30	4	44	1.70
12260894--12261215	102	3.1	101	76	6	276	25	18	10	44	1.82
12264725--12264812	35	2.5	35	81	3	97	52	14	9	23	1.70
12265656--12265739	19	4.1	19	74	17	71	54	1	2	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12265666--12265751	42	2.1	42	86	2	120	52	2	2	43	1.26
12265999--12266050	26	2.0	26	85	7	70	55	0	1	42	1.10
12265655--12266274	153	4.0	155	77	10	556	53	2	2	41	1.28
12266147--12266198	26	2.0	26	85	7	70	57	1	1	38	1.21
12266963--12267026	25	2.5	24	80	14	67	57	3	1	37	1.24
12284658--12284682	7	3.6	7	100	0	50	36	0	32	32	1.58
12284729--12284753	2	12.5	2	100	0	50	52	48	0	0	1.00
12288176--12288276	38	2.6	39	90	3	150	21	21	37	18	1.94
12295622--12295651	2	15.0	2	100	0	60	50	0	0	50	1.00
12297457--12297496	15	2.5	17	80	15	50	70	2	27	0	1.01
12303495--12303585	31	2.9	31	80	4	101	36	15	10	37	1.83
12322892--12322918	14	1.9	14	100	0	54	88	3	7	0	0.61
12326523--12326596	36	2.1	36	94	0	130	36	31	6	25	1.82
12326562--12326616	27	2.0	27	92	0	92	34	29	9	27	1.87
12328860--12328966	42	2.6	42	85	4	130	25	13	35	26	1.92
12332782--12332990	62	3.3	61	82	3	229	31	21	24	22	1.99
12333122--12333170	2	25.0	2	85	4	64	42	2	0	55	1.11
12334318--12334415	45	2.2	45	81	7	119	22	32	28	16	1.95
12334866--12334903	19	2.0	19	89	0	58	47	0	0	52	1.00
12342941--12343030	45	2.0	45	91	0	144	28	6	24	40	1.80
12355120--12355155	18	1.9	19	88	5	56	75	2	0	22	0.94
12356330--12356365	18	1.9	19	88	5	56	75	2	0	22	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12373015--12373098	31	2.7	31	90	3	125	16	20	4	58	1.56
12373147--12373295	44	3.4	44	82	5	167	30	15	15	38	1.88
12378597--12378750	77	2.0	76	91	1	245	25	35	11	26	1.89
12388060--12388163	43	2.4	43	83	0	136	47	12	18	22	1.82
12388654--12388794	28	4.9	28	79	6	140	26	14	24	34	1.94
12388766--12388833	34	2.0	34	82	5	84	23	13	25	38	1.91
12397261--12397288	2	14.0	2	100	0	56	50	0	0	50	1.00
12397988--12398152	33	4.9	33	80	8	181	25	11	26	36	1.90
12397989--12398152	34	4.8	33	80	8	163	25	11	26	36	1.90
12397990--12398122	67	1.9	67	84	4	176	24	12	27	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50