genome.fa.s8.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Length:  19593398

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  24  of  50  ( 5896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10783444--10783496	28	1.9	27	88	3	79	33	20	18	26	1.96
10787860--10787929	34	2.1	34	91	5	115	25	31	15	27	1.96
10791291--10791353	32	2.0	32	90	0	99	55	20	1	22	1.52
10793025--10793070	23	2.0	23	86	0	65	13	23	10	52	1.71
10793444--10793616	28	6.2	28	72	17	101	31	12	16	38	1.87
10793513--10793617	29	4.0	26	72	13	81	29	14	16	40	1.87
10793623--10793845	24	9.4	24	81	4	256	20	17	22	39	1.93
10793541--10793914	117	3.2	117	87	3	491	24	17	20	37	1.94
10793647--10793815	93	1.8	93	89	0	266	21	18	21	38	1.93
10793868--10793961	24	4.0	24	71	8	77	28	17	18	36	1.93
10793810--10793952	69	2.1	69	88	2	207	27	19	18	34	1.95
10796253--10796299	21	2.3	21	92	3	78	29	4	21	44	1.71
10845488--10845549	31	2.0	31	100	0	124	32	16	25	25	1.96
10848618--10848658	15	2.7	15	85	14	50	2	29	0	68	1.03
10852304--10852398	40	2.4	40	89	5	140	32	24	20	23	1.98
10852695--10852719	12	2.1	12	100	0	50	52	8	0	40	1.31
10852765--10852874	43	2.6	43	85	5	134	20	38	17	23	1.93
10853670--10853707	19	2.0	20	94	5	69	36	15	26	21	1.93
10856715--10856819	55	1.9	56	84	9	144	52	8	20	18	1.71
10857543--10857727	31	6.1	30	74	12	144	35	11	21	31	1.89
10857703--10857746	22	2.0	22	95	0	79	29	13	34	22	1.93
10857682--10857822	53	2.7	54	87	4	216	31	13	25	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10857778--10857840	31	2.0	31	81	0	72	34	9	23	31	1.87
10858231--10858282	14	3.6	14	75	12	52	25	3	3	67	1.25
10858229--10858295	28	2.3	29	87	2	91	22	4	4	68	1.26
10859308--10859342	15	2.3	15	85	0	52	20	2	5	71	1.19
10870328--10870361	16	2.1	16	100	0	68	35	23	14	26	1.94
10870837--10870881	23	2.0	23	83	16	58	48	13	15	22	1.79
10874109--10874181	36	2.2	32	80	11	76	39	16	8	35	1.78
10874118--10874190	36	2.0	36	94	0	128	36	15	6	41	1.73
10874809--10874842	17	2.0	17	100	0	68	35	11	5	47	1.65
10883977--10884064	35	2.5	34	87	5	122	36	3	14	45	1.62
10897728--10897795	34	1.9	34	88	5	100	42	5	11	39	1.66
10897728--10897847	36	3.4	34	76	11	116	43	7	11	37	1.70
10908071--10908125	20	2.8	19	77	20	60	47	0	7	45	1.30
10909329--10909389	20	3.0	20	97	0	113	31	26	0	42	1.55
10912800--10912852	28	1.9	27	88	3	79	28	22	18	30	1.98
10912897--10912962	20	3.3	20	95	0	114	45	19	4	30	1.70
10925757--10925792	17	2.1	17	100	0	72	41	22	5	30	1.76
10928591--10928617	3	9.0	3	100	0	54	66	0	0	33	0.92
10929550--10929597	21	2.3	20	82	10	53	18	10	6	64	1.45
10931021--10931050	6	5.2	6	96	4	53	0	16	0	83	0.65
10931092--10931118	4	6.8	4	100	0	54	25	0	22	51	1.48
10934050--10934078	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10937455--10937495	4	10.2	4	100	0	82	24	0	24	51	1.49
10945472--10945587	43	2.7	43	86	0	142	21	37	18	22	1.95
10948356--10948395	21	1.9	21	89	0	62	30	12	15	42	1.83
11025637--11025825	50	3.8	49	88	5	272	42	25	7	23	1.81
11031438--11032026	50	11.6	51	82	3	573	41	21	10	26	1.85
11031438--11032026	101	5.8	102	80	3	580	41	21	10	26	1.85
11031440--11032024	151	3.9	148	80	7	579	41	21	10	27	1.85
11032839--11032885	9	5.6	9	78	14	55	0	12	0	87	0.55
11032846--11032886	10	3.9	10	87	9	55	0	9	0	90	0.46
11032838--11032885	24	2.0	24	95	0	87	0	14	0	85	0.60
11032848--11032886	14	2.7	15	81	18	55	0	10	0	89	0.48
11039233--11039278	20	2.3	20	88	7	67	32	4	17	45	1.68
11039323--11039375	28	1.9	27	88	3	79	30	18	22	28	1.98
11039323--11039381	28	2.1	28	84	6	75	30	20	23	25	1.98
11042630--11042737	42	2.6	41	80	5	119	23	33	23	20	1.97
11045296--11045420	42	3.0	42	81	6	146	24	33	20	20	1.97
11046189--11046227	19	2.1	19	95	0	69	41	15	23	20	1.90
11049711--11049758	21	2.3	20	79	10	60	14	22	6	56	1.61
11049716--11049756	21	1.9	22	90	5	66	17	24	7	51	1.70
11055859--11056061	63	3.2	63	92	0	334	23	32	14	29	1.94
11058596--11058634	20	2.0	20	89	0	60	30	2	2	64	1.21
11059018--11059063	18	2.5	19	82	6	60	23	10	0	65	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11060546--11060586	22	1.9	22	85	5	57	75	0	4	19	0.98
11060545--11060586	11	3.9	11	78	3	50	76	0	4	19	0.96
11063203--11063404	99	2.1	98	92	7	349	36	13	3	45	1.63
11063499--11063546	21	2.4	21	86	6	64	50	2	2	45	1.25
11063499--11063558	25	2.4	25	81	13	79	50	3	3	43	1.35
11063516--11063565	19	2.6	19	87	6	66	50	4	2	44	1.32
11063633--11063674	22	1.9	22	90	9	68	38	4	11	45	1.62
11074961--11074997	19	2.0	18	89	5	56	32	8	32	27	1.86
11075029--11075066	19	2.0	19	100	0	76	26	0	31	42	1.56
11075466--11075643	91	2.0	90	98	0	338	26	16	9	46	1.77
11091564--11091654	42	2.1	43	93	2	157	23	34	17	25	1.96
11096015--11096061	22	2.1	22	100	0	94	63	12	14	8	1.50
11100874--11100914	21	1.9	22	90	5	66	51	7	24	17	1.70
11100874--11100918	20	2.2	21	84	11	58	55	6	22	15	1.63
11100872--11100919	21	2.3	20	79	10	60	56	6	22	14	1.61
11102743--11102774	12	2.7	12	100	0	64	34	0	9	56	1.32
11103364--11103529	35	4.6	35	72	12	129	27	40	13	18	1.88
11106024--11106083	28	2.1	30	84	6	79	40	20	8	31	1.82
11118686--11118787	35	2.9	35	86	2	143	22	11	37	28	1.89
11126967--11127005	18	2.1	18	85	4	51	46	7	0	46	1.31
11133371--11133463	31	3.1	31	75	19	99	16	24	12	46	1.82
11133400--11133461	25	2.5	25	84	10	90	16	25	12	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11133453--11133487	16	2.2	16	90	5	54	2	17	0	80	0.84
11133701--11133778	34	2.3	34	84	0	102	35	25	7	30	1.84
11134175--11134221	25	1.9	24	82	4	58	0	12	6	80	0.88
11135223--11135279	22	2.6	22	91	0	96	31	26	21	21	1.98
11135539--11135663	42	3.0	42	92	0	205	21	33	23	21	1.97
11142738--11142782	19	2.4	19	92	0	72	11	17	33	37	1.85
11146644--11146753	45	2.4	45	83	3	132	61	12	21	3	1.46
11147347--11147444	44	2.2	44	88	0	142	25	5	26	42	1.75
11149742--11149779	14	2.8	14	88	4	51	55	15	0	28	1.41
11154036--11154083	20	2.4	20	82	0	60	64	18	2	14	1.38
11163043--11163142	42	2.4	42	89	0	146	23	31	24	22	1.99
11169351--11169422	37	2.0	37	86	2	101	31	22	12	33	1.91
11173535--11173581	22	2.0	24	84	15	64	48	6	25	19	1.72
11173544--11173587	22	2.0	22	82	8	54	54	9	20	15	1.68
11177311--11177347	19	1.9	19	94	0	65	29	0	27	43	1.55
11177393--11177446	27	2.0	27	82	17	67	27	25	24	22	2.00
11234502--11234531	2	15.0	2	100	0	60	50	0	0	50	1.00
11234989--11235079	25	3.5	25	88	5	128	16	19	12	51	1.75
11235078--11235113	14	2.5	15	90	4	56	0	19	0	80	0.71
11235126--11235173	22	2.2	22	92	0	78	10	45	8	35	1.68
11235309--11235428	23	5.1	23	85	4	159	34	25	7	32	1.84
11235320--11235428	48	2.3	46	85	4	146	33	24	7	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11243858--11243893	15	2.4	15	90	9	56	58	0	25	16	1.38
11245483--11245535	3	17.7	3	88	0	70	24	0	5	69	1.09
11245482--11245560	15	5.4	15	82	5	65	20	3	3	72	1.16
11245492--11245547	12	4.7	11	84	8	58	23	3	3	69	1.20
11251520--11251559	19	2.1	19	86	9	55	55	0	7	37	1.29
11253381--11253405	13	1.9	13	100	0	50	44	0	8	48	1.32
11255492--11255526	18	1.9	18	88	11	54	77	0	0	22	0.78
11255790--11256887	299	3.7	302	77	7	930	37	15	11	35	1.84
11255632--11256884	178	7.0	176	77	6	984	36	15	11	35	1.85
11255618--11256884	60	21.2	60	78	5	1053	36	15	11	35	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50